Wall clock time and date at job start Tue Mar 31 2020 23:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30850 * 125.42085 * 2 1 4 4 C 1.33319 * 109.68636 * 179.74296 * 3 2 1 5 5 C 1.36660 * 107.78505 * 0.37815 * 4 3 2 6 6 C 1.46766 * 126.84270 * 179.89548 * 5 4 3 7 7 O 1.21684 * 119.99931 * 185.01685 * 6 5 4 8 8 N 1.34775 * 120.00028 * 5.01668 * 6 5 4 9 9 C 1.46507 * 119.99707 * 174.64590 * 8 6 5 10 10 C 1.50702 * 109.46841 * 180.02562 * 9 8 6 11 11 C 1.38251 * 120.01965 * 270.21366 * 10 9 8 12 12 C 1.38148 * 119.96242 * 180.23473 * 11 10 9 13 13 C 1.38443 * 120.10045 * 359.53219 * 12 11 10 14 14 C 1.38071 * 119.93799 * 0.25515 * 13 12 11 15 15 C 1.38151 * 120.01846 * 90.00031 * 10 9 8 16 16 C 1.50779 * 108.86286 * 180.02562 * 14 13 12 17 17 N 1.46629 * 107.70143 * 359.97438 * 16 14 13 18 18 C 1.36938 * 126.56534 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99592 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00402 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00023 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00167 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47119 * 89.99687 * 22 20 18 24 24 H 1.48503 * 109.46997 * 210.00104 * 22 20 18 25 25 H 1.48504 * 109.46863 * 329.99545 * 22 20 18 26 26 C 1.46637 * 106.87668 * 0.02562 * 17 16 14 27 27 N 1.34502 * 125.41430 * 179.97438 * 2 1 3 28 28 C 1.46497 * 126.47408 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.47487 * 270.02322 * 1 2 3 30 30 H 1.09007 * 109.46984 * 30.02654 * 1 2 3 31 31 H 1.08999 * 109.47040 * 150.02047 * 1 2 3 32 32 H 1.08007 * 126.10699 * 180.27675 * 4 3 2 33 33 H 0.96994 * 119.99945 * 354.65200 * 8 6 5 34 34 H 1.08993 * 109.46927 * 60.00046 * 9 8 6 35 35 H 1.09000 * 109.46914 * 299.99970 * 9 8 6 36 36 H 1.07994 * 120.01893 * 0.04739 * 11 10 9 37 37 H 1.07993 * 119.94807 * 179.80814 * 12 11 10 38 38 H 1.08005 * 119.94530 * 0.02562 * 15 10 9 39 39 H 1.08991 * 109.81469 * 119.54541 * 16 14 13 40 40 H 1.08999 * 109.80897 * 240.45341 * 16 14 13 41 41 H 0.97000 * 119.99891 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.81390 * 240.45219 * 26 17 16 43 43 H 1.08997 * 109.81315 * 119.55039 * 26 17 16 44 44 H 1.09004 * 109.46812 * 272.99560 * 28 27 2 45 45 H 1.08996 * 109.47017 * 32.99905 * 28 27 2 46 46 H 1.08999 * 109.47216 * 152.99918 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7048 0.0056 5 6 3.5975 -0.6609 0.0008 6 6 4.8028 -1.4984 0.0021 7 8 4.7038 -2.7073 -0.0949 8 7 6.0193 -0.9284 0.1106 9 6 7.2137 -1.7683 0.2300 10 6 8.4352 -0.8922 0.3369 11 6 9.1051 -0.4969 -0.8061 12 6 10.2275 0.3022 -0.7064 13 6 10.6772 0.7160 0.5358 14 6 10.0057 0.3248 1.6771 15 6 8.8837 -0.4800 1.5769 16 6 10.7027 0.9121 2.8782 17 7 11.8477 1.6893 2.3935 18 6 12.7446 2.3850 3.1596 19 1 12.6430 2.3948 4.2348 20 6 13.7836 3.0784 2.5542 21 7 13.9071 3.0669 1.2439 22 14 15.0066 4.0279 3.5993 23 1 16.1408 3.1409 3.9626 24 1 15.5153 5.1924 2.8308 25 1 14.3359 4.5053 4.8352 26 6 11.8486 1.5791 0.9312 27 7 2.2864 -1.0962 0.0005 28 6 1.8310 -2.4886 0.0006 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 4.3978 1.3721 0.0112 33 1 6.1039 0.0379 0.1098 34 1 7.2991 -2.4057 -0.6500 35 1 7.1333 -2.3895 1.1221 36 1 8.7528 -0.8152 -1.7761 37 1 10.7524 0.6083 -1.5992 38 1 8.3585 -0.7864 2.4694 39 1 10.0176 1.5628 3.4215 40 1 11.0500 0.1119 3.5317 41 1 14.6330 3.5517 0.8209 42 1 12.7773 1.1173 0.5961 43 1 11.7455 2.5687 0.4861 44 1 1.6666 -2.8170 1.0269 45 1 0.8991 -2.5660 -0.5594 46 1 2.5885 -3.1186 -0.4656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054278814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:14 Heat of formation + Delta-G solvation = 61.604386 kcal Electronic energy + Delta-G solvation = -27867.729067 eV Core-core repulsion = 23951.206751 eV Total energy + Delta-G solvation = -3916.522316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.29896 -41.20191 -40.29257 -37.88238 -35.96551 -34.99216 -34.11512 -33.05263 -32.37160 -31.41166 -29.50091 -28.43788 -27.83194 -27.47145 -25.84388 -23.90398 -23.52511 -22.10172 -21.56578 -21.49931 -20.75328 -19.00044 -18.90555 -17.34562 -17.23803 -17.18693 -16.89185 -16.42278 -16.15254 -16.05934 -15.85439 -15.55881 -15.21134 -14.95798 -14.77725 -14.50031 -14.18449 -14.13657 -13.76421 -13.61561 -13.49246 -13.46921 -13.29790 -13.25788 -13.09930 -13.05193 -13.03612 -12.69892 -12.10628 -11.98494 -11.83086 -11.64832 -11.50997 -11.02200 -10.90025 -10.75871 -10.24392 -9.71804 -9.59628 -9.49020 -8.85091 -7.93713 -5.30555 0.22308 0.25323 0.45820 1.45744 1.47226 1.48451 1.57251 1.73616 2.25159 2.30413 2.44560 2.86058 3.28700 3.39780 3.45870 3.54043 3.66404 3.80682 3.88819 3.95335 3.97403 4.14122 4.31125 4.33809 4.36335 4.50681 4.55924 4.64765 4.70127 4.72899 4.76045 4.78462 4.84278 4.97379 5.05220 5.16059 5.18182 5.26718 5.29653 5.32345 5.45159 5.46472 5.51968 5.56482 5.86880 6.04738 6.05710 6.09743 6.38873 6.85972 7.00285 7.05708 7.65241 8.32992 9.19417 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.001946 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.529364 B =14388.171243 C =14989.375039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.228 3.772 3 N -0.530 5.530 4 C 0.039 3.961 5 C -0.112 4.112 6 C 0.599 3.401 7 O -0.576 6.576 8 N -0.702 5.702 9 C 0.180 3.820 10 C -0.110 4.110 11 C -0.086 4.086 12 C -0.111 4.111 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.074 4.074 16 C 0.171 3.829 17 N -0.625 5.625 18 C -0.244 4.244 19 H 0.090 0.910 20 C -0.065 4.065 21 N -0.952 5.952 22 Si 0.988 3.012 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.266 1.266 26 C 0.221 3.779 27 N -0.429 5.429 28 C 0.060 3.940 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.195 0.805 33 H 0.413 0.587 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.251 0.749 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.089 0.911 45 H 0.119 0.881 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.453 -11.552 -5.080 30.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.034 4.034 3 N -0.249 5.249 4 C -0.116 4.116 5 C -0.228 4.228 6 C 0.386 3.614 7 O -0.457 6.457 8 N -0.353 5.353 9 C 0.058 3.942 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.130 4.130 13 C -0.111 4.111 14 C -0.118 4.118 15 C -0.092 4.092 16 C 0.046 3.954 17 N -0.351 5.351 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.815 3.185 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.191 1.191 26 C 0.096 3.904 27 N -0.110 5.110 28 C -0.080 4.080 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.211 0.789 33 H 0.250 0.750 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.173 0.827 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.108 0.892 45 H 0.137 0.863 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.675 -11.693 -5.123 30.478 hybrid contribution 1.873 0.506 0.441 1.989 sum -25.802 -11.188 -4.682 28.510 Atomic orbital electron populations 1.20504 0.81336 1.05813 1.05259 1.24285 0.97555 0.80595 1.00965 1.70143 1.02778 1.29481 1.22548 1.23025 0.95716 0.91567 1.01254 1.20703 0.85870 0.94977 1.21246 1.16809 0.82494 0.86164 0.75898 1.90761 1.87192 1.15229 1.52541 1.45678 1.04625 1.11411 1.73564 1.20089 0.79491 0.91041 1.03592 1.19602 0.97851 1.00922 0.92665 1.21166 0.93837 0.96206 0.99216 1.20686 0.97671 0.99013 0.95605 1.21198 0.97139 0.97653 0.95133 1.20570 0.96797 0.99176 0.95260 1.20509 0.94185 0.96078 0.98468 1.19806 0.88448 0.93592 0.93526 1.44259 1.30024 1.58365 1.02460 1.19402 1.04078 1.23192 0.90550 0.89179 1.25771 1.00989 1.01794 0.97304 1.70155 1.33744 1.47040 1.09105 0.84946 0.78463 0.77447 0.77652 1.21051 1.21871 1.19053 1.19285 0.91986 0.94800 0.84379 1.45319 1.04679 1.09415 1.51591 1.22490 1.03184 0.77207 1.05157 0.88272 0.88387 0.87986 0.78861 0.75000 0.89472 0.90067 0.82706 0.85161 0.84094 0.93988 0.94143 0.94023 0.95881 0.95724 0.89237 0.86273 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.18 71.24 0.73 0.23 16 2 C 0.23 3.85 7.88 138.20 1.09 4.94 16 3 N -0.53 -11.75 11.20 -187.39 -2.10 -13.85 16 4 C 0.04 0.80 11.37 84.10 0.96 1.76 16 5 C -0.11 -2.31 6.91 40.01 0.28 -2.03 16 6 C 0.60 12.97 7.78 86.47 0.67 13.64 16 7 O -0.58 -15.14 14.81 -4.30 -0.06 -15.20 16 8 N -0.70 -12.63 5.53 -470.72 -2.61 -15.23 16 9 C 0.18 3.32 5.80 85.63 0.50 3.81 16 10 C -0.11 -2.46 5.25 -19.88 -0.10 -2.56 16 11 C -0.09 -2.01 9.70 22.25 0.22 -1.79 16 12 C -0.11 -3.46 10.05 22.30 0.22 -3.24 16 13 C -0.11 -4.41 6.22 -19.83 -0.12 -4.53 16 14 C -0.12 -4.30 6.22 -19.83 -0.12 -4.42 16 15 C -0.07 -1.98 9.70 22.30 0.22 -1.77 16 16 C 0.17 7.34 7.25 85.63 0.62 7.96 16 17 N -0.62 -33.49 3.41 -709.72 -2.42 -35.90 16 18 C -0.24 -13.89 10.32 84.03 0.87 -13.02 16 19 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 20 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 21 N -0.95 -57.60 10.44 21.65 0.23 -57.38 16 22 Si 0.99 45.67 29.55 68.60 2.03 47.70 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.22 11.41 5.39 85.63 0.46 11.87 16 27 N -0.43 -7.49 3.17 -524.95 -1.67 -9.16 16 28 C 0.06 0.67 10.57 127.77 1.35 2.02 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.10 0.18 7.09 -2.39 -0.02 0.17 16 32 H 0.19 3.01 7.47 -2.91 -0.02 2.98 16 33 H 0.41 6.38 7.41 -92.71 -0.69 5.69 16 34 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 35 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 36 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.02 1.34 7.49 -2.39 -0.02 1.32 16 43 H 0.02 1.42 7.49 -2.39 -0.02 1.41 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.12 0.47 7.11 -2.39 -0.02 0.46 16 46 H 0.09 1.39 6.24 -2.39 -0.01 1.38 16 Total: -1.00 -77.55 383.01 2.02 -75.53 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.33 Total: 13.90 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 8.29 Total: 9.59 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -8.56 Total: -131.52 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.06 Total: -15.20 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -77.55 2.02 -75.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054278814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.139 kcal (2) G-P(sol) polarization free energy of solvation -77.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds