Wall clock time and date at job start Tue Mar 31 2020 23:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35443 * 125.69184 * 2 1 4 4 N 1.36431 * 107.22225 * 179.97438 * 3 2 1 5 5 C 1.36724 * 132.26580 * 179.97438 * 4 3 2 6 6 C 1.34543 * 120.95385 * 179.97438 * 5 4 3 7 7 C 1.41775 * 120.14987 * 0.04186 * 6 5 4 8 8 C 1.47647 * 120.37553 * 180.02562 * 7 6 5 9 9 O 1.21590 * 119.99882 * 6.59241 * 8 7 6 10 10 N 1.34779 * 120.00432 * 186.60089 * 8 7 6 11 11 C 1.47393 * 135.84804 * 5.16861 * 10 8 7 12 12 C 1.52072 * 87.40594 * 154.39300 * 11 10 8 13 13 C 1.47389 * 135.85635 * 185.54436 * 10 8 7 14 14 C 1.53512 * 117.21313 * 267.27808 * 12 11 10 15 15 C 1.54637 * 102.70396 * 262.93512 * 14 12 11 16 16 N 1.47148 * 107.37447 * 339.38220 * 15 14 12 17 17 C 1.36933 * 125.57736 * 179.05000 * 16 15 14 18 18 H 1.07999 * 119.99779 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00305 * 0.02562 * 17 16 15 20 20 N 1.31626 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00268 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46935 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47147 * 120.00106 * 21 19 17 24 24 H 1.48498 * 109.47274 * 240.00307 * 21 19 17 25 25 C 1.47758 * 108.84009 * 359.08802 * 16 15 14 26 26 C 1.38441 * 119.25257 * 359.97438 * 7 6 5 27 27 C 1.37193 * 106.97241 * 359.97438 * 4 3 2 28 28 N 1.32648 * 108.05878 * 359.77274 * 27 4 3 29 29 H 1.09000 * 109.47161 * 89.99594 * 1 2 3 30 30 H 1.09002 * 109.47104 * 210.00201 * 1 2 3 31 31 H 1.09006 * 109.46845 * 329.99861 * 1 2 3 32 32 H 1.08002 * 126.38788 * 359.94568 * 3 2 1 33 33 H 1.07996 * 119.52345 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.92422 * 180.02562 * 6 5 4 35 35 H 1.09002 * 113.54178 * 269.00188 * 11 10 8 36 36 H 1.09002 * 113.54123 * 39.68271 * 11 10 8 37 37 H 1.08996 * 113.54381 * 320.32035 * 13 10 8 38 38 H 1.08998 * 113.54382 * 90.92890 * 13 10 8 39 39 H 1.09007 * 110.76419 * 21.23242 * 14 12 11 40 40 H 1.08999 * 110.76817 * 144.62577 * 14 12 11 41 41 H 1.08993 * 109.86540 * 98.83182 * 15 14 12 42 42 H 1.09002 * 109.86045 * 219.93243 * 15 14 12 43 43 H 0.97000 * 119.99666 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.40578 * 263.50366 * 25 16 15 45 45 H 1.08996 * 110.39999 * 141.07583 * 25 16 15 46 46 H 1.08007 * 120.45595 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1000 0.0000 4 7 3.5913 0.6678 0.0006 5 6 4.7840 1.3362 0.0004 6 6 5.9517 0.6679 0.0016 7 6 5.9609 -0.7498 0.0023 8 6 7.2394 -1.4882 0.0042 9 8 8.2889 -0.8863 0.1261 10 7 7.2434 -2.8294 -0.1294 11 6 6.2312 -3.8696 -0.3861 12 6 7.3508 -4.7175 -0.9693 13 6 8.2606 -3.8946 -0.0757 14 6 7.5883 -4.6218 -2.4830 15 6 6.8140 -5.8450 -3.0267 16 7 6.6436 -6.7887 -1.9107 17 6 5.9915 -7.9910 -1.9765 18 1 5.9194 -8.6150 -1.0980 19 6 5.4230 -8.4078 -3.1724 20 7 5.5113 -7.6474 -4.2432 21 14 4.5328 -10.0475 -3.2621 22 1 4.5732 -10.7060 -1.9317 23 1 3.1198 -9.8226 -3.6599 24 1 5.1972 -10.9173 -4.2657 25 6 7.2905 -6.2263 -0.7072 26 6 4.7574 -1.4341 0.0021 27 6 3.5554 -0.7037 0.0015 28 7 2.2840 -1.0818 0.0065 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9649 2.1276 -0.0008 33 1 4.7889 2.4161 -0.0008 34 1 6.8842 1.2127 0.0019 35 1 5.7963 -4.2874 0.5218 36 1 5.4797 -3.5744 -1.1184 37 1 9.2036 -3.6204 -0.5487 38 1 8.3949 -4.3186 0.9194 39 1 7.1753 -3.6949 -2.8811 40 1 8.6506 -4.7032 -2.7134 41 1 5.8388 -5.5307 -3.3982 42 1 7.3829 -6.3172 -3.8276 43 1 5.1144 -7.9388 -5.0790 44 1 8.2953 -6.6323 -0.5910 45 1 6.6908 -6.4344 0.1789 46 1 4.7416 -2.5140 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072979856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:33 Heat of formation + Delta-G solvation = 136.470527 kcal Electronic energy + Delta-G solvation = -29136.975974 eV Core-core repulsion = 25223.700098 eV Total energy + Delta-G solvation = -3913.275876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.07422 -40.85866 -38.73568 -37.17922 -35.74206 -34.01075 -32.22576 -31.96497 -30.16904 -29.23964 -28.69612 -27.69523 -26.25198 -25.83023 -24.17006 -23.52968 -22.90627 -21.11476 -20.32477 -19.60691 -18.62339 -18.12720 -17.30069 -16.77491 -16.72583 -16.28168 -15.92281 -15.54013 -14.91825 -14.77676 -14.66489 -14.37653 -13.90631 -13.74298 -13.61774 -13.43368 -13.28390 -12.92391 -12.69191 -12.47329 -12.30596 -12.11567 -11.94547 -11.86298 -11.65858 -11.18481 -11.00554 -10.92931 -10.69017 -10.50642 -10.32142 -10.27107 -10.09393 -9.91764 -9.73047 -9.64288 -8.95496 -8.68308 -8.61004 -8.11177 -6.85272 -5.72170 -3.06004 0.21515 0.83376 2.30369 2.40913 2.71102 2.78886 3.40408 3.45492 3.46110 3.48414 3.78623 4.09092 4.27598 4.37567 4.46436 4.56102 4.73410 4.89485 4.93490 4.97253 5.04545 5.16436 5.22602 5.42611 5.46376 5.49317 5.50701 5.56981 5.62908 5.65217 5.67288 5.74068 5.76764 5.78559 5.88620 6.08767 6.14309 6.20460 6.37199 6.43576 6.48492 6.62551 6.67365 6.76110 7.54767 7.59795 7.62480 7.67423 7.81665 8.04868 8.23511 9.20408 9.80535 10.45478 11.39420 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.003163 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.547053 B = 8850.372272 C =10922.767788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.059 3.941 3 C -0.094 4.094 4 N -0.353 5.353 5 C 0.043 3.957 6 C -0.094 4.094 7 C -0.112 4.112 8 C 0.590 3.410 9 O -0.541 6.541 10 N -0.636 5.636 11 C 0.107 3.893 12 C -0.103 4.103 13 C 0.122 3.878 14 C -0.117 4.117 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.153 3.847 26 C -0.036 4.036 27 C 0.212 3.788 28 N -0.474 5.474 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.184 0.816 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.028 0.972 45 H 0.044 0.956 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 19.370 9.550 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.227 4.227 4 N -0.025 5.025 5 C -0.078 4.078 6 C -0.115 4.115 7 C -0.121 4.121 8 C 0.380 3.620 9 O -0.420 6.420 10 N -0.370 5.370 11 C -0.015 4.015 12 C -0.105 4.105 13 C 0.000 4.000 14 C -0.156 4.156 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.027 3.973 26 C -0.056 4.056 27 C -0.030 4.030 28 N -0.195 5.195 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.201 0.799 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.062 0.938 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.162 19.035 9.479 21.498 hybrid contribution -0.267 0.102 -0.154 0.325 sum -3.429 19.137 9.325 21.562 Atomic orbital electron populations 1.20164 0.86639 1.03272 1.02989 1.21026 0.97050 0.87827 1.01647 1.22499 0.80753 1.01186 1.18248 1.42832 1.06199 1.08856 1.44577 1.21460 0.82543 0.98736 1.05072 1.20747 0.97913 0.92877 0.99944 1.19954 0.92844 0.93988 1.05306 1.17333 0.87993 0.79970 0.76656 1.90778 1.32785 1.67114 1.51274 1.49686 1.14109 1.03520 1.69644 1.23155 0.93456 0.84575 1.00276 1.22190 0.94792 0.96562 0.96964 1.22828 0.93786 0.83462 0.99964 1.22484 1.00921 1.00544 0.91625 1.21234 0.97603 0.85842 0.89891 1.44542 1.64080 1.19496 1.04974 1.19084 1.27101 0.93503 0.95949 0.90312 1.24797 1.01036 0.98721 0.95804 1.69971 1.49472 1.36931 1.00458 0.86058 0.79195 0.83165 0.77414 1.20491 1.21757 1.21814 1.21143 0.96510 0.88015 0.91667 1.21396 0.87262 1.01707 0.95259 1.20729 0.94291 0.80318 1.07622 1.70630 0.98001 1.29406 1.21425 0.90565 0.90456 0.90820 0.79912 0.81417 0.82007 0.88803 0.89401 0.90078 0.89355 0.92101 0.91649 0.93461 0.93742 0.93801 0.95431 0.93824 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.01 0.38 -0.20 16 2 C 0.06 0.69 7.06 -83.00 -0.59 0.10 16 3 C -0.09 -0.92 11.64 -16.50 -0.19 -1.11 16 4 N -0.35 -4.00 2.94 -62.75 -0.18 -4.19 16 5 C 0.04 0.38 10.91 -16.68 -0.18 0.20 16 6 C -0.09 -0.98 9.54 -39.54 -0.38 -1.36 16 7 C -0.11 -1.45 5.90 -104.63 -0.62 -2.07 16 8 C 0.59 8.82 8.00 -12.42 -0.10 8.72 16 9 O -0.54 -9.40 17.19 5.29 0.09 -9.31 16 10 N -0.64 -9.02 3.68 -186.93 -0.69 -9.71 16 11 C 0.11 1.52 5.45 -7.32 -0.04 1.48 16 12 C -0.10 -1.62 1.06 -155.22 -0.16 -1.79 16 13 C 0.12 1.64 8.03 -7.47 -0.06 1.58 16 14 C -0.12 -2.08 6.40 -25.61 -0.16 -2.25 16 15 C 0.18 4.15 5.39 -2.83 -0.02 4.13 16 16 N -0.60 -14.54 3.41 -170.53 -0.58 -15.12 16 17 C -0.23 -6.11 10.28 -15.06 -0.15 -6.27 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.52 10.30 55.49 0.57 -25.95 16 21 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 C 0.15 2.85 6.70 -3.22 -0.02 2.82 16 26 C -0.04 -0.47 9.26 -38.60 -0.36 -0.83 16 27 C 0.21 2.95 7.79 -155.97 -1.22 1.74 16 28 N -0.47 -7.05 11.31 -9.02 -0.10 -7.15 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.16 1.47 7.71 -52.49 -0.40 1.07 16 35 H 0.09 1.19 8.04 -51.93 -0.42 0.77 16 36 H 0.09 1.30 6.84 -51.93 -0.36 0.94 16 37 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 42 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 46 H 0.17 2.19 4.22 -52.48 -0.22 1.97 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -34.08 376.03 -10.57 -44.66 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.36 Total: -0.23 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -3.97 Total: 4.60 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.98 Total: -62.12 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.08 -10.57 -44.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072979856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.128 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds