Wall clock time and date at job start Tue Mar 31 2020 23:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35443 * 125.69184 * 2 1 4 4 N 1.36431 * 107.22225 * 179.97438 * 3 2 1 5 5 C 1.36724 * 132.26580 * 179.97438 * 4 3 2 6 6 C 1.34543 * 120.95385 * 179.97438 * 5 4 3 7 7 C 1.41775 * 120.14987 * 0.04186 * 6 5 4 8 8 C 1.47647 * 120.37553 * 180.02562 * 7 6 5 9 9 O 1.21590 * 119.99882 * 6.59241 * 8 7 6 10 10 N 1.34779 * 120.00432 * 186.60089 * 8 7 6 11 11 C 1.47393 * 135.84804 * 5.16861 * 10 8 7 12 12 C 1.52072 * 87.40594 * 154.39300 * 11 10 8 13 13 C 1.47389 * 135.85635 * 185.54436 * 10 8 7 14 14 C 1.53512 * 117.21313 * 267.27808 * 12 11 10 15 15 C 1.54637 * 102.70396 * 262.93512 * 14 12 11 16 16 N 1.47148 * 107.37447 * 339.38220 * 15 14 12 17 17 C 1.36933 * 125.57736 * 179.05000 * 16 15 14 18 18 H 1.07999 * 119.99779 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00305 * 0.02562 * 17 16 15 20 20 N 1.31626 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00268 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46935 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.47147 * 120.00106 * 21 19 17 24 24 H 1.48498 * 109.47274 * 240.00307 * 21 19 17 25 25 C 1.47758 * 108.84009 * 359.08802 * 16 15 14 26 26 C 1.38441 * 119.25257 * 359.97438 * 7 6 5 27 27 C 1.37193 * 106.97241 * 359.97438 * 4 3 2 28 28 N 1.32648 * 108.05878 * 359.77274 * 27 4 3 29 29 H 1.09000 * 109.47161 * 89.99594 * 1 2 3 30 30 H 1.09002 * 109.47104 * 210.00201 * 1 2 3 31 31 H 1.09006 * 109.46845 * 329.99861 * 1 2 3 32 32 H 1.08002 * 126.38788 * 359.94568 * 3 2 1 33 33 H 1.07996 * 119.52345 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.92422 * 180.02562 * 6 5 4 35 35 H 1.09002 * 113.54178 * 269.00188 * 11 10 8 36 36 H 1.09002 * 113.54123 * 39.68271 * 11 10 8 37 37 H 1.08996 * 113.54381 * 320.32035 * 13 10 8 38 38 H 1.08998 * 113.54382 * 90.92890 * 13 10 8 39 39 H 1.09007 * 110.76419 * 21.23242 * 14 12 11 40 40 H 1.08999 * 110.76817 * 144.62577 * 14 12 11 41 41 H 1.08993 * 109.86540 * 98.83182 * 15 14 12 42 42 H 1.09002 * 109.86045 * 219.93243 * 15 14 12 43 43 H 0.97000 * 119.99666 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.40578 * 263.50366 * 25 16 15 45 45 H 1.08996 * 110.39999 * 141.07583 * 25 16 15 46 46 H 1.08007 * 120.45595 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1000 0.0000 4 7 3.5913 0.6678 0.0006 5 6 4.7840 1.3362 0.0004 6 6 5.9517 0.6679 0.0016 7 6 5.9609 -0.7498 0.0023 8 6 7.2394 -1.4882 0.0042 9 8 8.2889 -0.8863 0.1261 10 7 7.2434 -2.8294 -0.1294 11 6 6.2312 -3.8696 -0.3861 12 6 7.3508 -4.7175 -0.9693 13 6 8.2606 -3.8946 -0.0757 14 6 7.5883 -4.6218 -2.4830 15 6 6.8140 -5.8450 -3.0267 16 7 6.6436 -6.7887 -1.9107 17 6 5.9915 -7.9910 -1.9765 18 1 5.9194 -8.6150 -1.0980 19 6 5.4230 -8.4078 -3.1724 20 7 5.5113 -7.6474 -4.2432 21 14 4.5328 -10.0475 -3.2621 22 1 4.5732 -10.7060 -1.9317 23 1 3.1198 -9.8226 -3.6599 24 1 5.1972 -10.9173 -4.2657 25 6 7.2905 -6.2263 -0.7072 26 6 4.7574 -1.4341 0.0021 27 6 3.5554 -0.7037 0.0015 28 7 2.2840 -1.0818 0.0065 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.9649 2.1276 -0.0008 33 1 4.7889 2.4161 -0.0008 34 1 6.8842 1.2127 0.0019 35 1 5.7963 -4.2874 0.5218 36 1 5.4797 -3.5744 -1.1184 37 1 9.2036 -3.6204 -0.5487 38 1 8.3949 -4.3186 0.9194 39 1 7.1753 -3.6949 -2.8811 40 1 8.6506 -4.7032 -2.7134 41 1 5.8388 -5.5307 -3.3982 42 1 7.3829 -6.3172 -3.8276 43 1 5.1144 -7.9388 -5.0790 44 1 8.2953 -6.6323 -0.5910 45 1 6.6908 -6.4344 0.1789 46 1 4.7416 -2.5140 0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072979856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:32 Heat of formation + Delta-G solvation = 116.160578 kcal Electronic energy + Delta-G solvation = -29137.856680 eV Core-core repulsion = 25223.700098 eV Total energy + Delta-G solvation = -3914.156582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.91356 -42.08315 -39.92437 -38.12693 -37.35534 -34.95599 -34.05180 -32.71294 -31.50597 -30.67606 -29.94522 -28.59996 -27.46143 -27.27084 -25.69367 -24.56305 -23.87693 -22.15718 -21.94645 -20.73639 -19.87003 -19.12831 -18.58244 -18.24762 -17.72967 -17.18896 -17.04115 -16.74412 -16.66019 -16.04809 -15.71779 -15.53803 -15.39908 -14.97516 -14.60613 -14.23695 -14.12226 -14.04035 -13.92144 -13.75158 -13.65432 -13.35209 -13.29511 -12.93938 -12.82058 -12.79296 -12.46433 -12.27129 -12.10017 -11.97599 -11.95977 -11.83361 -11.71287 -11.24478 -11.21963 -11.00459 -10.67622 -9.87744 -9.75027 -8.94087 -8.84674 -7.80981 -5.15526 -0.69554 0.01581 1.48970 1.49547 1.50524 1.52188 1.59549 1.63467 1.85120 2.49284 2.52723 2.87304 3.20024 3.27894 3.39315 3.46944 3.54960 3.66871 3.78324 3.91413 4.02208 4.18932 4.20834 4.23695 4.29758 4.33925 4.44134 4.50775 4.61576 4.63236 4.68735 4.83508 4.84130 4.85767 4.90353 4.90687 4.98815 5.02900 5.10094 5.15384 5.20430 5.32048 5.51419 5.61238 5.67652 5.80175 5.99465 6.22902 6.51686 6.78062 6.90807 7.14070 7.81800 8.45697 9.29666 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.003163 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.547053 B = 8850.372272 C =10922.767788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.033 3.967 3 C -0.075 4.075 4 N -0.357 5.357 5 C 0.062 3.938 6 C -0.109 4.109 7 C -0.117 4.117 8 C 0.589 3.411 9 O -0.568 6.568 10 N -0.636 5.636 11 C 0.114 3.886 12 C -0.098 4.098 13 C 0.131 3.869 14 C -0.102 4.102 15 C 0.190 3.810 16 N -0.625 5.625 17 C -0.233 4.233 18 H 0.088 0.912 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.296 1.296 25 C 0.151 3.849 26 C -0.050 4.050 27 C 0.181 3.819 28 N -0.519 5.519 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.230 0.770 33 H 0.218 0.782 34 H 0.176 0.824 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.005 0.995 43 H 0.244 0.756 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 21.753 11.513 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C -0.207 4.207 4 N -0.029 5.029 5 C -0.058 4.058 6 C -0.130 4.130 7 C -0.126 4.126 8 C 0.381 3.619 9 O -0.449 6.449 10 N -0.369 5.369 11 C -0.008 4.008 12 C -0.100 4.100 13 C 0.009 3.991 14 C -0.141 4.141 15 C 0.065 3.935 16 N -0.352 5.352 17 C -0.362 4.362 18 H 0.105 0.895 19 C -0.261 4.261 20 N -0.603 5.603 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.224 1.224 24 H -0.223 1.223 25 C 0.026 3.974 26 C -0.071 4.071 27 C -0.060 4.060 28 N -0.241 5.241 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.247 0.753 33 H 0.235 0.765 34 H 0.193 0.807 35 H 0.131 0.869 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.027 0.973 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.373 21.412 11.487 24.531 hybrid contribution -0.244 -0.586 -0.740 0.976 sum -3.617 20.825 10.746 23.712 Atomic orbital electron populations 1.20268 0.84615 1.04261 1.03615 1.21722 0.98621 0.87789 1.01976 1.23246 0.79649 1.02625 1.15230 1.43096 1.07499 1.08117 1.44165 1.22171 0.81072 1.00631 1.01910 1.20947 0.99300 0.91761 1.00976 1.19939 0.91591 0.95195 1.05893 1.17608 0.88351 0.79938 0.76005 1.90756 1.33807 1.67542 1.52761 1.49661 1.14231 1.03626 1.69346 1.23142 0.92810 0.84154 1.00706 1.22010 0.97020 0.95232 0.95749 1.22865 0.93172 0.82385 1.00683 1.22266 1.00718 0.97914 0.93162 1.20906 0.95732 0.87524 0.89387 1.44825 1.64140 1.19129 1.07081 1.19509 1.26161 0.94497 0.96017 0.89450 1.25609 1.02655 1.02057 0.95799 1.70199 1.50849 1.38535 1.00684 0.85064 0.77375 0.79466 0.77791 1.18675 1.22362 1.22302 1.21328 0.96613 0.89432 0.90007 1.21280 0.87649 1.01461 0.96671 1.20769 0.94106 0.81874 1.09221 1.70566 0.99090 1.31654 1.22838 0.90037 0.91635 0.87666 0.75342 0.76538 0.80678 0.86926 0.90587 0.89618 0.86584 0.91594 0.90348 0.97302 0.97631 0.94691 0.94235 0.92354 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.42 71.24 0.74 -0.26 16 2 C 0.03 0.71 7.06 41.71 0.29 1.01 16 3 C -0.08 -1.23 11.64 83.33 0.97 -0.26 16 4 N -0.36 -7.26 2.94 -352.45 -1.04 -8.29 16 5 C 0.06 0.91 10.91 83.08 0.91 1.81 16 6 C -0.11 -2.06 9.54 22.30 0.21 -1.85 16 7 C -0.12 -2.97 5.90 -19.87 -0.12 -3.08 16 8 C 0.59 17.13 8.00 86.73 0.69 17.82 16 9 O -0.57 -19.14 17.19 -4.00 -0.07 -19.21 16 10 N -0.64 -17.32 3.68 -863.57 -3.17 -20.50 16 11 C 0.11 3.15 5.45 83.77 0.46 3.61 16 12 C -0.10 -2.99 1.06 -52.62 -0.06 -3.04 16 13 C 0.13 3.23 8.03 83.67 0.67 3.90 16 14 C -0.10 -3.66 6.40 31.32 0.20 -3.46 16 15 C 0.19 9.20 5.39 86.81 0.47 9.67 16 16 N -0.63 -30.57 3.41 -693.44 -2.36 -32.93 16 17 C -0.23 -12.62 10.28 84.03 0.86 -11.76 16 18 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 19 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 20 N -0.95 -57.47 10.30 21.65 0.22 -57.24 16 21 Si 0.97 45.65 29.55 68.60 2.03 47.67 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 C 0.15 5.44 6.70 86.23 0.58 6.02 16 26 C -0.05 -1.34 9.26 22.91 0.21 -1.13 16 27 C 0.18 5.02 7.79 133.97 1.04 6.07 16 28 N -0.52 -15.62 11.31 -182.46 -2.06 -17.69 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.23 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.22 0.91 8.06 -2.91 -0.02 0.88 16 34 H 0.18 2.79 7.71 -2.91 -0.02 2.77 16 35 H 0.11 2.71 8.04 -2.39 -0.02 2.70 16 36 H 0.08 2.32 6.84 -2.39 -0.02 2.30 16 37 H 0.09 2.10 8.13 -2.39 -0.02 2.08 16 38 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.28 8.07 -2.38 -0.02 2.27 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.01 0.48 7.38 -2.39 -0.02 0.47 16 42 H 0.01 0.30 7.49 -2.39 -0.02 0.28 16 43 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.94 8.00 -2.39 -0.02 1.92 16 46 H 0.16 4.32 4.22 -2.91 -0.01 4.31 16 Total: -1.00 -78.48 376.03 3.15 -75.33 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.00 Total: 11.18 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 8.61 Total: 21.66 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -8.42 Total: -136.65 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.07 Total: -19.21 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -78.48 3.15 -75.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072979856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.494 kcal (2) G-P(sol) polarization free energy of solvation -78.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds