Wall clock time and date at job start Tue Mar 31 2020 23:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40173 * 120.19546 * 2 1 4 4 C 1.35256 * 120.12480 * 179.97438 * 3 2 1 5 5 N 1.35961 * 120.63872 * 0.02609 * 4 3 2 6 6 C 1.38293 * 132.39293 * 179.97438 * 5 4 3 7 7 C 1.41805 * 126.79211 * 0.02562 * 6 5 4 8 8 O 1.21779 * 119.99913 * 7.35196 * 7 6 5 9 9 N 1.34780 * 120.00236 * 187.35330 * 7 6 5 10 10 C 1.47351 * 125.52891 * 5.30256 * 9 7 6 11 11 C 1.55154 * 104.78645 * 156.48637 * 10 9 7 12 12 C 1.54799 * 101.39971 * 37.51832 * 11 10 9 13 13 H 1.09001 * 112.64065 * 85.17840 * 12 11 10 14 14 C 1.53271 * 109.74691 * 212.12316 * 12 11 10 15 15 N 1.46588 * 108.15305 * 95.76669 * 14 12 11 16 16 C 1.36941 * 125.29972 * 177.88739 * 15 14 12 17 17 H 1.07996 * 120.00262 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99477 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00051 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46951 * 89.99928 * 20 18 16 22 22 H 1.48492 * 109.46863 * 210.00239 * 20 18 16 23 23 H 1.48506 * 109.46833 * 329.99971 * 20 18 16 24 24 C 1.46605 * 109.38913 * 357.88901 * 15 14 12 25 25 C 1.47217 * 125.52975 * 185.60756 * 9 7 6 26 26 H 1.08994 * 112.28456 * 56.20914 * 25 9 7 27 27 C 1.38530 * 106.42028 * 179.97438 * 6 5 4 28 28 N 1.32329 * 108.21814 * 0.02562 * 27 6 5 29 29 C 1.33203 * 109.81187 * 359.72677 * 28 27 6 30 30 C 1.36280 * 120.19128 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47454 * 270.02281 * 1 2 3 32 32 H 1.09005 * 109.46880 * 30.02498 * 1 2 3 33 33 H 1.08995 * 109.47230 * 150.02106 * 1 2 3 34 34 H 1.08000 * 119.93785 * 359.97438 * 3 2 1 35 35 H 1.07994 * 119.68409 * 179.97438 * 4 3 2 36 36 H 1.08993 * 110.35251 * 275.43770 * 10 9 7 37 37 H 1.09000 * 110.35028 * 37.72328 * 10 9 7 38 38 H 1.08998 * 111.20500 * 279.43798 * 11 10 9 39 39 H 1.09001 * 110.95392 * 155.49402 * 11 10 9 40 40 H 1.08995 * 109.73830 * 215.45336 * 14 12 11 41 41 H 1.09001 * 109.73305 * 336.10714 * 14 12 11 42 42 H 0.96995 * 119.99919 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.90999 * 258.45024 * 24 15 14 44 44 H 1.09000 * 109.91128 * 137.16821 * 24 15 14 45 45 H 1.08007 * 125.88792 * 179.97438 * 27 6 5 46 46 H 1.07998 * 120.31537 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2115 0.0000 4 6 3.5646 1.2099 0.0005 5 7 4.2560 0.0392 0.0005 6 6 5.6096 -0.2442 0.0005 7 6 6.6736 0.6933 0.0010 8 8 6.4389 1.8805 0.1365 9 7 7.9446 0.2703 -0.1484 10 6 8.3583 -1.1155 -0.4302 11 6 9.7550 -0.9848 -1.0930 12 6 10.3664 0.1886 -0.2895 13 1 10.8370 -0.1381 0.6379 14 6 11.3080 0.9970 -1.1889 15 7 10.5583 2.1350 -1.7291 16 6 11.0743 3.1078 -2.5431 17 1 12.1132 3.0721 -2.8358 18 6 10.2618 4.1399 -2.9922 19 7 8.9957 4.1837 -2.6351 20 14 10.9654 5.4666 -4.1031 21 1 10.8083 5.0584 -5.5223 22 1 10.2405 6.7417 -3.8717 23 1 12.4067 5.6542 -3.7985 24 6 9.1702 2.0691 -1.2621 25 6 9.1450 1.1168 -0.0503 26 1 9.2029 1.6432 0.9023 27 6 5.7206 -1.6250 0.0011 28 7 4.5008 -2.1381 0.0009 29 6 3.5988 -1.1580 0.0061 30 6 2.1924 -1.1779 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6742 2.1481 -0.0004 35 1 4.1006 2.1474 0.0001 36 1 8.4273 -1.6863 0.4958 37 1 7.6561 -1.5886 -1.1167 38 1 9.6679 -0.7317 -2.1496 39 1 10.3373 -1.8964 -0.9582 40 1 12.1548 1.3579 -0.6052 41 1 11.6646 0.3702 -2.0062 42 1 8.4279 4.9047 -2.9492 43 1 8.5302 1.6797 -2.0539 44 1 8.8321 3.0609 -0.9619 45 1 6.6436 -2.1860 0.0009 46 1 1.6607 -2.1180 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075829765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:54 Heat of formation + Delta-G solvation = 105.596124 kcal Electronic energy + Delta-G solvation = -29865.496060 eV Core-core repulsion = 25950.881369 eV Total energy + Delta-G solvation = -3914.614691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.00354 -40.07899 -38.07196 -37.60747 -35.09273 -34.25382 -32.43658 -31.03842 -30.67863 -30.13204 -28.86750 -27.44640 -26.46960 -24.53233 -23.90801 -23.72752 -22.11921 -21.56545 -20.56109 -19.90944 -19.01325 -17.58094 -17.05626 -16.88600 -16.57640 -16.31828 -15.50554 -15.29923 -14.94317 -14.72489 -14.55866 -14.18392 -14.01196 -13.77329 -13.56239 -13.22860 -12.93756 -12.77606 -12.49430 -12.37022 -12.18010 -11.99304 -11.88120 -11.84692 -11.54982 -11.21484 -11.03987 -10.78580 -10.76328 -10.42601 -10.40415 -10.16660 -10.02656 -9.76883 -9.69622 -9.56806 -9.02525 -8.57932 -8.29845 -7.87701 -6.79970 -5.60743 -3.03013 0.57014 0.72866 2.24315 2.31206 3.30155 3.39016 3.42485 3.46806 3.49474 3.60104 3.93995 4.35601 4.45960 4.51011 4.55075 4.74997 4.77017 4.90684 5.00473 5.07508 5.15430 5.21592 5.22244 5.33953 5.44406 5.47789 5.52060 5.59331 5.65683 5.68277 5.78806 5.80739 5.92778 6.01362 6.03107 6.19207 6.30043 6.32472 6.35636 6.53468 6.62429 6.67536 6.84456 6.88852 7.54942 7.60541 7.66090 7.86193 7.98139 8.38853 8.49726 9.26298 9.87392 10.49391 11.43314 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.003259 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.325113 B = 8588.655196 C =10167.845584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.149 4.149 4 C 0.086 3.914 5 N -0.325 5.325 6 C -0.128 4.128 7 C 0.605 3.395 8 O -0.538 6.538 9 N -0.596 5.596 10 C 0.088 3.912 11 C -0.122 4.122 12 C -0.109 4.109 13 H 0.089 0.911 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.913 5.913 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.167 3.833 25 C 0.119 3.881 26 H 0.084 0.916 27 C 0.087 3.913 28 N -0.500 5.500 29 C 0.243 3.757 30 C -0.100 4.100 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.155 0.845 35 H 0.180 0.820 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.252 0.748 43 H 0.020 0.980 44 H 0.097 0.903 45 H 0.200 0.800 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.110 -13.106 7.569 20.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.061 4.061 3 C -0.169 4.169 4 C -0.038 4.038 5 N 0.005 4.995 6 C -0.242 4.242 7 C 0.395 3.605 8 O -0.417 6.417 9 N -0.329 5.329 10 C -0.035 4.035 11 C -0.160 4.160 12 C -0.129 4.129 13 H 0.107 0.893 14 C 0.019 3.981 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.561 5.561 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.042 3.958 25 C 0.015 3.985 26 H 0.102 0.898 27 C -0.072 4.072 28 N -0.219 5.219 29 C 0.003 3.997 30 C -0.120 4.120 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.173 0.827 35 H 0.197 0.803 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.114 0.886 45 H 0.217 0.783 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.523 -13.018 7.534 20.227 hybrid contribution 0.595 1.476 -0.655 1.721 sum -12.928 -11.542 6.879 18.646 Atomic orbital electron populations 1.20791 0.89452 1.03575 1.02998 1.19867 0.97180 0.92048 0.97029 1.20848 0.91887 0.99506 1.04683 1.22148 0.93039 0.89883 0.98751 1.42402 1.06459 1.07651 1.42961 1.19904 0.82621 0.96254 1.25440 1.14948 0.80815 0.86735 0.78014 1.90868 1.83261 1.16575 1.51013 1.48099 1.04760 1.09870 1.70216 1.22775 0.97204 0.83991 0.99510 1.22862 0.94051 0.98393 1.00685 1.22888 0.95971 0.95330 0.98693 0.89281 1.20979 0.93537 0.89412 0.94179 1.44179 1.06455 1.25192 1.57072 1.19022 0.94734 1.00769 1.21403 0.90355 1.24853 0.95833 0.99050 1.00702 1.69934 1.04621 1.33416 1.48095 0.86113 0.77928 0.81355 0.80315 1.21668 1.21673 1.20654 1.21648 0.85666 0.98638 0.89891 1.22993 0.81379 0.92551 1.01540 0.89814 1.23848 0.96836 0.89796 0.96715 1.70520 0.99050 1.28791 1.23580 1.21058 0.94491 0.80374 1.03785 1.20095 0.87992 0.99691 1.04182 0.90384 0.90765 0.90848 0.82731 0.80263 0.91099 0.90198 0.89777 0.90093 0.95812 0.95622 0.93718 0.96222 0.88553 0.78338 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.02 36.01 0.36 -0.24 16 2 C -0.05 -0.49 5.88 -104.60 -0.62 -1.11 16 3 C -0.15 -1.48 9.68 -39.92 -0.39 -1.87 16 4 C 0.09 1.17 10.51 -16.78 -0.18 1.00 16 5 N -0.33 -5.07 2.96 -60.15 -0.18 -5.25 16 6 C -0.13 -2.14 6.76 -83.48 -0.56 -2.71 16 7 C 0.60 11.68 7.48 -14.89 -0.11 11.57 16 8 O -0.54 -12.27 15.38 5.12 0.08 -12.19 16 9 N -0.60 -10.54 2.85 -164.85 -0.47 -11.01 16 10 C 0.09 1.15 5.04 -2.44 -0.01 1.13 16 11 C -0.12 -1.67 6.25 -24.64 -0.15 -1.82 16 12 C -0.11 -1.78 3.90 -88.33 -0.34 -2.13 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.15 2.93 6.66 -3.85 -0.03 2.90 16 15 N -0.60 -15.57 3.37 -172.21 -0.58 -16.15 16 16 C -0.23 -6.53 10.25 -15.06 -0.15 -6.68 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 19 N -0.91 -27.86 10.17 55.49 0.56 -27.30 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.17 4.26 4.68 -3.39 -0.02 4.25 16 25 C 0.12 2.35 3.91 -65.75 -0.26 2.09 16 26 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 27 C 0.09 1.25 10.11 -17.23 -0.17 1.08 16 28 N -0.50 -7.51 11.25 -12.27 -0.14 -7.65 16 29 C 0.24 3.48 7.77 -156.06 -1.21 2.27 16 30 C -0.10 -1.07 9.75 -39.37 -0.38 -1.45 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.18 2.63 6.83 -52.49 -0.36 2.27 16 36 H 0.07 0.72 7.65 -51.93 -0.40 0.32 16 37 H 0.08 0.96 5.94 -51.93 -0.31 0.65 16 38 H 0.08 1.36 7.88 -51.93 -0.41 0.95 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.03 0.51 7.74 -51.93 -0.40 0.11 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 44 H 0.10 2.89 6.22 -51.93 -0.32 2.56 16 45 H 0.20 2.21 4.66 -52.48 -0.24 1.97 16 46 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -36.07 364.99 -10.77 -46.84 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.20 Total: 1.74 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -4.32 Total: 7.96 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -0.80 Total: -67.36 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.07 -10.77 -46.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075829765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.439 kcal (2) G-P(sol) polarization free energy of solvation -36.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds