Wall clock time and date at job start Tue Mar 31 2020 23:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40173 * 120.19546 * 2 1 4 4 C 1.35256 * 120.12480 * 179.97438 * 3 2 1 5 5 N 1.35961 * 120.63872 * 0.02609 * 4 3 2 6 6 C 1.38293 * 132.39293 * 179.97438 * 5 4 3 7 7 C 1.41805 * 126.79211 * 0.02562 * 6 5 4 8 8 O 1.21779 * 119.99913 * 7.35196 * 7 6 5 9 9 N 1.34780 * 120.00236 * 187.35330 * 7 6 5 10 10 C 1.47351 * 125.52891 * 5.30256 * 9 7 6 11 11 C 1.55154 * 104.78645 * 156.48637 * 10 9 7 12 12 C 1.54799 * 101.39971 * 37.51832 * 11 10 9 13 13 H 1.09001 * 112.64065 * 85.17840 * 12 11 10 14 14 C 1.53271 * 109.74691 * 212.12316 * 12 11 10 15 15 N 1.46588 * 108.15305 * 95.76669 * 14 12 11 16 16 C 1.36941 * 125.29972 * 177.88739 * 15 14 12 17 17 H 1.07996 * 120.00262 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99477 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00051 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46951 * 89.99928 * 20 18 16 22 22 H 1.48492 * 109.46863 * 210.00239 * 20 18 16 23 23 H 1.48506 * 109.46833 * 329.99971 * 20 18 16 24 24 C 1.46605 * 109.38913 * 357.88901 * 15 14 12 25 25 C 1.47217 * 125.52975 * 185.60756 * 9 7 6 26 26 H 1.08994 * 112.28456 * 56.20914 * 25 9 7 27 27 C 1.38530 * 106.42028 * 179.97438 * 6 5 4 28 28 N 1.32329 * 108.21814 * 0.02562 * 27 6 5 29 29 C 1.33203 * 109.81187 * 359.72677 * 28 27 6 30 30 C 1.36280 * 120.19128 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47454 * 270.02281 * 1 2 3 32 32 H 1.09005 * 109.46880 * 30.02498 * 1 2 3 33 33 H 1.08995 * 109.47230 * 150.02106 * 1 2 3 34 34 H 1.08000 * 119.93785 * 359.97438 * 3 2 1 35 35 H 1.07994 * 119.68409 * 179.97438 * 4 3 2 36 36 H 1.08993 * 110.35251 * 275.43770 * 10 9 7 37 37 H 1.09000 * 110.35028 * 37.72328 * 10 9 7 38 38 H 1.08998 * 111.20500 * 279.43798 * 11 10 9 39 39 H 1.09001 * 110.95392 * 155.49402 * 11 10 9 40 40 H 1.08995 * 109.73830 * 215.45336 * 14 12 11 41 41 H 1.09001 * 109.73305 * 336.10714 * 14 12 11 42 42 H 0.96995 * 119.99919 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.90999 * 258.45024 * 24 15 14 44 44 H 1.09000 * 109.91128 * 137.16821 * 24 15 14 45 45 H 1.08007 * 125.88792 * 179.97438 * 27 6 5 46 46 H 1.07998 * 120.31537 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2115 0.0000 4 6 3.5646 1.2099 0.0005 5 7 4.2560 0.0392 0.0005 6 6 5.6096 -0.2442 0.0005 7 6 6.6736 0.6933 0.0010 8 8 6.4389 1.8805 0.1365 9 7 7.9446 0.2703 -0.1484 10 6 8.3583 -1.1155 -0.4302 11 6 9.7550 -0.9848 -1.0930 12 6 10.3664 0.1886 -0.2895 13 1 10.8370 -0.1381 0.6379 14 6 11.3080 0.9970 -1.1889 15 7 10.5583 2.1350 -1.7291 16 6 11.0743 3.1078 -2.5431 17 1 12.1132 3.0721 -2.8358 18 6 10.2618 4.1399 -2.9922 19 7 8.9957 4.1837 -2.6351 20 14 10.9654 5.4666 -4.1031 21 1 10.8083 5.0584 -5.5223 22 1 10.2405 6.7417 -3.8717 23 1 12.4067 5.6542 -3.7985 24 6 9.1702 2.0691 -1.2621 25 6 9.1450 1.1168 -0.0503 26 1 9.2029 1.6432 0.9023 27 6 5.7206 -1.6250 0.0011 28 7 4.5008 -2.1381 0.0009 29 6 3.5988 -1.1580 0.0061 30 6 2.1924 -1.1779 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5143 33 1 -0.3633 -0.8901 -0.5135 34 1 1.6742 2.1481 -0.0004 35 1 4.1006 2.1474 0.0001 36 1 8.4273 -1.6863 0.4958 37 1 7.6561 -1.5886 -1.1167 38 1 9.6679 -0.7317 -2.1496 39 1 10.3373 -1.8964 -0.9582 40 1 12.1548 1.3579 -0.6052 41 1 11.6646 0.3702 -2.0062 42 1 8.4279 4.9047 -2.9492 43 1 8.5302 1.6797 -2.0539 44 1 8.8321 3.0609 -0.9619 45 1 6.6436 -2.1860 0.0009 46 1 1.6607 -2.1180 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075829765.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:53 Heat of formation + Delta-G solvation = 82.041254 kcal Electronic energy + Delta-G solvation = -29866.517476 eV Core-core repulsion = 25950.881369 eV Total energy + Delta-G solvation = -3915.636107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.06329 -41.50512 -39.37603 -38.78917 -36.76509 -35.24323 -34.23462 -32.42658 -32.02179 -31.09895 -30.37594 -28.76124 -27.81509 -26.41406 -25.11310 -24.75804 -23.22938 -22.78938 -22.08158 -21.29906 -20.49494 -18.98468 -18.68408 -17.97451 -17.89972 -17.51528 -17.03120 -16.61848 -16.34508 -15.95049 -15.76660 -15.57954 -15.23193 -15.11728 -14.80761 -14.42722 -14.20526 -14.14805 -13.80407 -13.53447 -13.33447 -13.24428 -13.02083 -13.01260 -12.87029 -12.81651 -12.69403 -12.59929 -12.17995 -11.88173 -11.69505 -11.61440 -11.58753 -11.46806 -11.41261 -11.02280 -10.76070 -10.04457 -9.75085 -8.95019 -8.92434 -7.80607 -5.26247 -0.39246 -0.28167 1.15056 1.22143 1.40707 1.44152 1.53158 2.09804 2.24895 2.37226 2.46614 3.00438 3.29057 3.34473 3.41044 3.57582 3.65249 3.71824 3.78252 3.86733 4.00590 4.02848 4.14212 4.30651 4.31970 4.35996 4.47713 4.49166 4.63107 4.67003 4.73339 4.82337 4.84665 4.91050 4.95854 5.10450 5.16495 5.17171 5.18573 5.23215 5.33993 5.45411 5.48593 5.48956 5.57674 5.79597 5.82229 6.22863 6.46359 6.52670 7.03224 7.09042 7.76926 8.37406 9.21408 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.003259 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.325113 B = 8588.655196 C =10167.845584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.039 4.039 3 C -0.122 4.122 4 C 0.043 3.957 5 N -0.335 5.335 6 C -0.175 4.175 7 C 0.597 3.403 8 O -0.596 6.596 9 N -0.598 5.598 10 C 0.083 3.917 11 C -0.113 4.113 12 C -0.091 4.091 13 H 0.136 0.864 14 C 0.136 3.864 15 N -0.625 5.625 16 C -0.241 4.241 17 H 0.090 0.910 18 C -0.074 4.074 19 N -0.951 5.951 20 Si 0.983 3.017 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.261 1.261 24 C 0.188 3.812 25 C 0.123 3.877 26 H 0.073 0.927 27 C 0.109 3.891 28 N -0.518 5.518 29 C 0.234 3.766 30 C -0.106 4.106 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.188 0.812 35 H 0.153 0.847 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.133 0.867 40 H 0.034 0.966 41 H 0.038 0.962 42 H 0.241 0.759 43 H -0.027 1.027 44 H 0.039 0.961 45 H 0.231 0.769 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.809 -16.358 8.255 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.045 4.045 3 C -0.142 4.142 4 C -0.082 4.082 5 N -0.004 5.004 6 C -0.288 4.288 7 C 0.390 3.610 8 O -0.480 6.480 9 N -0.330 5.330 10 C -0.037 4.037 11 C -0.151 4.151 12 C -0.110 4.110 13 H 0.154 0.846 14 C 0.011 3.989 15 N -0.352 5.352 16 C -0.369 4.369 17 H 0.108 0.892 18 C -0.267 4.267 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.186 1.186 24 C 0.062 3.938 25 C 0.018 3.982 26 H 0.091 0.909 27 C -0.052 4.052 28 N -0.237 5.237 29 C -0.005 4.005 30 C -0.126 4.126 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.205 0.795 35 H 0.171 0.829 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.151 0.849 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.051 0.949 43 H -0.009 1.009 44 H 0.057 0.943 45 H 0.247 0.753 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.179 -16.336 8.226 23.143 hybrid contribution 0.652 2.499 -0.877 2.727 sum -13.528 -13.838 7.349 20.700 Atomic orbital electron populations 1.20926 0.85961 1.05150 1.04513 1.20365 0.99335 0.90736 0.94113 1.21356 0.90342 1.01691 1.00820 1.22187 0.94464 0.89030 1.02477 1.42528 1.06346 1.08438 1.43093 1.19701 0.82720 0.96710 1.29671 1.15430 0.81931 0.86533 0.77139 1.90823 1.84214 1.19016 1.53921 1.48145 1.03668 1.11597 1.69626 1.23170 0.96945 0.81682 1.01939 1.22883 0.94722 0.99209 0.98250 1.22952 0.93115 0.94739 1.00204 0.84639 1.21281 0.94199 0.88232 0.95151 1.44506 1.07094 1.26594 1.56978 1.19519 0.95245 1.01153 1.21026 0.89179 1.25814 0.96181 1.01801 1.02860 1.70290 1.06167 1.33822 1.49698 0.85013 0.77954 0.77837 0.78153 1.21263 1.22473 1.18560 1.21112 0.85015 0.96973 0.90724 1.22671 0.84528 0.92974 0.98034 0.90854 1.24290 0.97822 0.88657 0.94388 1.70555 0.99301 1.28951 1.24892 1.21748 0.95872 0.79821 1.03076 1.20595 0.86494 1.01682 1.03849 0.88619 0.89336 0.89236 0.79508 0.82919 0.86491 0.89107 0.93063 0.84853 0.94815 0.94409 0.94940 1.00894 0.94289 0.75324 0.80106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.02 71.24 0.71 0.01 16 2 C -0.04 -0.59 5.88 -19.85 -0.12 -0.71 16 3 C -0.12 -2.32 9.68 22.05 0.21 -2.11 16 4 C 0.04 1.26 10.51 83.37 0.88 2.14 16 5 N -0.33 -10.93 2.96 -344.21 -1.02 -11.95 16 6 C -0.17 -6.14 6.76 39.08 0.26 -5.87 16 7 C 0.60 24.92 7.48 85.12 0.64 25.55 16 8 O -0.60 -30.48 15.38 -4.60 -0.07 -30.55 16 9 N -0.60 -21.85 2.85 -793.63 -2.26 -24.11 16 10 C 0.08 1.97 5.04 86.96 0.44 2.41 16 11 C -0.11 -2.75 6.25 31.95 0.20 -2.55 16 12 C -0.09 -2.78 3.90 -9.31 -0.04 -2.81 16 13 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 14 C 0.14 5.38 6.66 86.45 0.58 5.95 16 15 N -0.63 -33.66 3.37 -698.76 -2.36 -36.02 16 16 C -0.24 -14.05 10.25 84.03 0.86 -13.18 16 17 H 0.09 4.91 7.83 -2.91 -0.02 4.88 16 18 C -0.07 -4.49 5.48 84.86 0.47 -4.03 16 19 N -0.95 -62.59 10.17 21.65 0.22 -62.37 16 20 Si 0.98 48.16 29.55 68.60 2.03 50.19 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 23 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.19 10.39 4.68 86.75 0.41 10.79 16 25 C 0.12 5.04 3.91 46.02 0.18 5.22 16 26 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 27 C 0.11 3.04 10.11 84.69 0.86 3.90 16 28 N -0.52 -14.98 11.25 -192.72 -2.17 -17.15 16 29 C 0.23 6.58 7.77 134.01 1.04 7.62 16 30 C -0.11 -2.04 9.75 22.40 0.22 -1.82 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 0.39 8.10 -2.38 -0.02 0.37 16 33 H 0.09 0.37 8.08 -2.39 -0.02 0.36 16 34 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.15 5.20 6.83 -2.91 -0.02 5.18 16 36 H 0.12 1.80 7.65 -2.39 -0.02 1.78 16 37 H 0.09 1.99 5.94 -2.39 -0.01 1.97 16 38 H 0.05 1.61 7.88 -2.39 -0.02 1.59 16 39 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.04 1.42 7.74 -2.39 -0.02 1.40 16 42 H 0.24 15.60 8.31 -92.71 -0.77 14.83 16 43 H -0.03 -1.69 7.94 -2.39 -0.02 -1.71 16 44 H 0.04 2.58 6.22 -2.39 -0.01 2.57 16 45 H 0.23 4.48 4.66 -2.91 -0.01 4.47 16 46 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -91.00 364.99 3.17 -87.82 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.01 Total: 13.63 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 7.79 Total: 30.51 kcal Atomic # 7 Polarization: -144.01 SS G_CDS: -7.58 Total: -151.60 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.07 Total: -30.55 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -91.00 3.17 -87.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075829765.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.864 kcal (2) G-P(sol) polarization free energy of solvation -90.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds