Wall clock time and date at job start Tue Mar 31 2020 23:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40155 * 120.29574 * 2 1 4 4 C 1.35191 * 120.31904 * 180.02562 * 3 2 1 5 5 N 1.36241 * 120.70651 * 359.95425 * 4 3 2 6 6 N 1.40016 * 132.01224 * 180.02562 * 5 4 3 7 7 C 1.30734 * 109.60347 * 180.02562 * 6 5 4 8 8 C 1.40549 * 108.74715 * 359.97438 * 7 6 5 9 9 C 1.46565 * 126.57934 * 180.02562 * 8 7 6 10 10 O 1.21726 * 120.00235 * 172.85615 * 9 8 7 11 11 N 1.34780 * 120.00192 * 352.85103 * 9 8 7 12 12 C 1.47403 * 125.59090 * 182.88170 * 11 9 8 13 13 C 1.54856 * 104.80829 * 204.61501 * 12 11 9 14 14 C 1.55123 * 101.77648 * 322.81260 * 13 12 11 15 15 H 1.08999 * 113.45935 * 159.24766 * 14 13 12 16 16 C 1.54047 * 108.26096 * 286.09314 * 14 13 12 17 17 N 1.46703 * 106.82779 * 135.80734 * 16 14 13 18 18 C 1.36940 * 125.32045 * 161.82144 * 17 16 14 19 19 H 1.07993 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99627 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99934 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99551 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47163 * 90.00336 * 22 20 18 24 24 H 1.48507 * 109.46843 * 210.00049 * 22 20 18 25 25 H 1.48497 * 109.47257 * 329.99739 * 22 20 18 26 26 C 1.46637 * 109.35741 * 341.82162 * 17 16 14 27 27 C 1.46732 * 125.58815 * 2.58388 * 11 9 8 28 28 H 1.08993 * 111.32910 * 56.11423 * 27 11 9 29 29 C 1.36573 * 120.08030 * 0.03880 * 5 4 3 30 30 C 1.36454 * 120.29624 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47127 * 269.98160 * 1 2 3 32 32 H 1.08997 * 109.47180 * 29.98207 * 1 2 3 33 33 H 1.08994 * 109.47224 * 149.98204 * 1 2 3 34 34 H 1.08001 * 119.84544 * 0.02562 * 3 2 1 35 35 H 1.08004 * 119.64481 * 180.02562 * 4 3 2 36 36 H 1.08008 * 125.62424 * 180.26274 * 7 6 5 37 37 H 1.09000 * 110.36538 * 323.44549 * 12 11 9 38 38 H 1.08997 * 110.36863 * 85.77629 * 12 11 9 39 39 H 1.08999 * 110.96955 * 80.93686 * 13 12 11 40 40 H 1.09005 * 110.96157 * 204.65804 * 13 12 11 41 41 H 1.08994 * 109.98636 * 255.14995 * 16 14 13 42 42 H 1.08998 * 109.98788 * 16.46503 * 16 14 13 43 43 H 0.97010 * 119.99783 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.75821 * 120.92380 * 26 17 16 45 45 H 1.09001 * 109.75591 * 241.62952 * 26 17 16 46 46 H 1.08001 * 120.37206 * 359.95825 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2101 0.0000 4 6 3.5659 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0001 6 7 5.6352 -0.2343 0.0000 7 6 5.8244 -1.5279 -0.0001 8 6 4.5728 -2.1675 0.0003 9 6 4.3307 -3.6130 0.0009 10 8 3.1985 -4.0404 0.1323 11 7 5.3615 -4.4691 -0.1442 12 6 5.2531 -5.9371 -0.2214 13 6 6.6325 -6.4611 0.2486 14 6 7.5952 -5.4071 -0.3586 15 1 8.5675 -5.3735 0.1328 16 6 7.6842 -5.6525 -1.8767 17 7 7.5930 -4.3397 -2.5252 18 6 7.9746 -4.0636 -3.8111 19 1 8.3807 -4.8469 -4.4338 20 6 7.8386 -2.7771 -4.3143 21 7 7.3432 -1.8226 -3.5555 22 14 8.3598 -2.4003 -6.0681 23 1 7.2096 -2.6127 -6.9828 24 1 8.8096 -0.9879 -6.1581 25 1 9.4748 -3.3006 -6.4574 26 6 7.0293 -3.3694 -1.5813 27 6 6.7751 -4.0922 -0.2574 28 1 7.0943 -3.4905 0.5935 29 6 3.5960 -1.1527 0.0000 30 6 2.1953 -1.1782 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6763 2.1468 0.0004 35 1 4.0997 2.1496 -0.0001 36 1 6.7841 -2.0234 0.0039 37 1 4.4653 -6.2947 0.4416 38 1 5.0578 -6.2497 -1.2472 39 1 6.6972 -6.4675 1.3366 40 1 6.8322 -7.4525 -0.1580 41 1 8.6354 -6.1243 -2.1227 42 1 6.8587 -6.2862 -2.2008 43 1 7.2478 -0.9236 -3.9073 44 1 7.7342 -2.5523 -1.4278 45 1 6.0904 -2.9775 -1.9725 46 1 1.6663 -2.1197 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075910346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:23 Heat of formation + Delta-G solvation = 121.126220 kcal Electronic energy + Delta-G solvation = -30667.476682 eV Core-core repulsion = 26753.535427 eV Total energy + Delta-G solvation = -3913.941255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.94835 -40.08202 -37.70513 -37.36931 -34.60571 -33.54188 -32.16634 -31.30666 -31.14388 -29.24821 -28.63337 -27.23152 -26.30632 -24.70945 -23.84388 -22.90931 -21.87058 -21.18917 -20.69366 -19.66970 -18.72056 -17.62972 -16.97622 -16.42078 -16.10678 -15.57628 -15.43849 -15.15148 -14.84651 -14.53440 -14.27984 -14.07949 -13.75767 -13.57147 -13.25056 -13.12801 -12.72000 -12.67744 -12.48741 -12.19223 -11.92527 -11.87267 -11.77622 -11.47523 -11.22708 -11.07437 -10.99070 -10.73357 -10.63211 -10.39454 -10.22263 -10.20735 -10.12604 -9.89180 -9.71314 -9.35946 -9.10259 -8.62225 -8.14407 -7.37102 -6.83198 -5.70920 -3.05022 0.76103 1.15352 2.39183 2.59026 3.29914 3.40352 3.45329 3.47232 3.48517 4.00738 4.36027 4.49022 4.53424 4.64808 4.81681 4.87788 4.90006 5.15432 5.22272 5.28320 5.41231 5.42735 5.47057 5.49966 5.50979 5.58639 5.69012 5.73860 5.76114 5.81360 5.89314 5.96051 6.04261 6.10013 6.18667 6.31375 6.34161 6.40276 6.50135 6.62719 6.64315 6.78769 6.89569 7.01089 7.34309 7.54879 7.76172 7.77460 8.09763 8.24991 8.75274 9.21169 9.82563 10.45293 11.39640 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004714 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.415123 B = 5938.332396 C = 7737.201661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.168 4.168 4 C 0.119 3.881 5 N -0.271 5.271 6 N -0.314 5.314 7 C 0.132 3.868 8 C -0.304 4.304 9 C 0.621 3.379 10 O -0.568 6.568 11 N -0.599 5.599 12 C 0.113 3.887 13 C -0.125 4.125 14 C -0.108 4.108 15 H 0.100 0.900 16 C 0.141 3.859 17 N -0.599 5.599 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.916 5.916 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.165 3.835 27 C 0.095 3.905 28 H 0.081 0.919 29 C 0.163 3.837 30 C -0.109 4.109 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.212 0.788 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.021 0.979 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 1.877 11.475 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.057 4.057 3 C -0.190 4.190 4 C -0.008 4.008 5 N -0.035 5.035 6 N -0.134 5.134 7 C -0.049 4.049 8 C -0.318 4.318 9 C 0.413 3.587 10 O -0.449 6.449 11 N -0.332 5.332 12 C -0.010 4.010 13 C -0.163 4.163 14 C -0.128 4.128 15 H 0.118 0.882 16 C 0.014 3.986 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.039 3.961 27 C -0.010 4.010 28 H 0.098 0.902 29 C 0.043 3.957 30 C -0.128 4.128 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.356 3.012 11.401 14.453 hybrid contribution 0.088 -0.367 -1.212 1.269 sum -8.268 2.645 10.189 13.386 Atomic orbital electron populations 1.20791 0.89821 1.03456 1.02816 1.19964 0.97062 0.92239 0.96474 1.20710 0.91874 0.99359 1.07043 1.21499 0.91979 0.88558 0.98799 1.46162 1.06815 1.05015 1.45493 1.77669 0.87172 1.17418 1.31147 1.24991 0.99643 0.90139 0.90093 1.19546 0.91541 0.93007 1.27716 1.16394 0.83108 0.83980 0.75229 1.90696 1.21762 1.79146 1.53318 1.48012 1.06409 1.06514 1.72260 1.22141 0.97506 0.80003 1.01335 1.22780 0.94258 0.98861 1.00423 1.23128 0.97922 0.93547 0.98206 0.88208 1.21344 0.98365 0.89800 0.89045 1.44149 1.74054 1.03537 1.10852 1.19011 1.35543 0.94454 0.86972 0.90377 1.24780 1.01125 0.95933 0.98246 1.69916 1.50135 1.01367 1.34903 0.86147 0.78090 0.77318 0.84353 1.21735 1.21719 1.20670 1.21552 0.99250 0.90772 0.84518 1.22806 0.80533 0.97380 1.00240 0.90170 1.19199 0.92764 0.85904 0.97879 1.20667 0.90113 0.99908 1.02131 0.90514 0.91011 0.90789 0.82950 0.81341 0.77239 0.90859 0.91373 0.91056 0.89935 0.94557 0.96153 0.93737 0.92626 0.92348 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.03 36.00 0.36 -0.55 16 2 C -0.05 -0.61 5.89 -104.55 -0.62 -1.23 16 3 C -0.17 -1.75 9.67 -39.95 -0.39 -2.13 16 4 C 0.12 1.51 11.17 -16.68 -0.19 1.33 16 5 N -0.27 -4.71 3.86 -10.55 -0.04 -4.75 16 6 N -0.31 -6.16 12.57 30.75 0.39 -5.77 16 7 C 0.13 2.60 9.05 -17.15 -0.16 2.45 16 8 C -0.30 -6.11 5.57 -104.68 -0.58 -6.69 16 9 C 0.62 12.83 7.50 -12.90 -0.10 12.73 16 10 O -0.57 -12.46 15.97 5.17 0.08 -12.38 16 11 N -0.60 -11.30 2.99 -164.28 -0.49 -11.79 16 12 C 0.11 1.83 6.45 -2.57 -0.02 1.81 16 13 C -0.12 -1.65 6.35 -24.63 -0.16 -1.80 16 14 C -0.11 -1.73 4.35 -87.73 -0.38 -2.11 16 15 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 16 C 0.14 2.77 6.45 -3.39 -0.02 2.75 16 17 N -0.60 -14.91 3.38 -172.35 -0.58 -15.49 16 18 C -0.23 -6.38 10.25 -15.06 -0.15 -6.53 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 21 N -0.92 -26.67 10.24 55.49 0.57 -26.10 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.16 3.83 3.08 -3.99 -0.01 3.82 16 27 C 0.09 1.73 2.73 -66.61 -0.18 1.55 16 28 H 0.08 1.31 6.39 -51.93 -0.33 0.98 16 29 C 0.16 3.00 6.76 -84.07 -0.57 2.43 16 30 C -0.11 -1.68 9.39 -39.53 -0.37 -2.05 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 33 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.21 4.01 3.21 -52.48 -0.17 3.84 16 37 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 38 H 0.07 1.19 7.18 -51.93 -0.37 0.82 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.02 0.41 6.52 -51.93 -0.34 0.07 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.41 6.39 -51.93 -0.33 1.08 16 45 H 0.06 1.59 5.84 -51.93 -0.30 1.29 16 46 H 0.16 2.45 7.15 -52.49 -0.38 2.08 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -34.82 359.82 -9.28 -44.10 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.98 Total: 3.94 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -3.62 Total: 5.56 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.16 Total: -63.90 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.82 -9.28 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075910346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.231 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds