Wall clock time and date at job start Tue Mar 31 2020 23:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40155 * 120.29574 * 2 1 4 4 C 1.35191 * 120.31904 * 180.02562 * 3 2 1 5 5 N 1.36241 * 120.70651 * 359.95425 * 4 3 2 6 6 N 1.40016 * 132.01224 * 180.02562 * 5 4 3 7 7 C 1.30734 * 109.60347 * 180.02562 * 6 5 4 8 8 C 1.40549 * 108.74715 * 359.97438 * 7 6 5 9 9 C 1.46565 * 126.57934 * 180.02562 * 8 7 6 10 10 O 1.21726 * 120.00235 * 172.85615 * 9 8 7 11 11 N 1.34780 * 120.00192 * 352.85103 * 9 8 7 12 12 C 1.47403 * 125.59090 * 182.88170 * 11 9 8 13 13 C 1.54856 * 104.80829 * 204.61501 * 12 11 9 14 14 C 1.55123 * 101.77648 * 322.81260 * 13 12 11 15 15 H 1.08999 * 113.45935 * 159.24766 * 14 13 12 16 16 C 1.54047 * 108.26096 * 286.09314 * 14 13 12 17 17 N 1.46703 * 106.82779 * 135.80734 * 16 14 13 18 18 C 1.36940 * 125.32045 * 161.82144 * 17 16 14 19 19 H 1.07993 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99627 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99934 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99551 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47163 * 90.00336 * 22 20 18 24 24 H 1.48507 * 109.46843 * 210.00049 * 22 20 18 25 25 H 1.48497 * 109.47257 * 329.99739 * 22 20 18 26 26 C 1.46637 * 109.35741 * 341.82162 * 17 16 14 27 27 C 1.46732 * 125.58815 * 2.58388 * 11 9 8 28 28 H 1.08993 * 111.32910 * 56.11423 * 27 11 9 29 29 C 1.36573 * 120.08030 * 0.03880 * 5 4 3 30 30 C 1.36454 * 120.29624 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47127 * 269.98160 * 1 2 3 32 32 H 1.08997 * 109.47180 * 29.98207 * 1 2 3 33 33 H 1.08994 * 109.47224 * 149.98204 * 1 2 3 34 34 H 1.08001 * 119.84544 * 0.02562 * 3 2 1 35 35 H 1.08004 * 119.64481 * 180.02562 * 4 3 2 36 36 H 1.08008 * 125.62424 * 180.26274 * 7 6 5 37 37 H 1.09000 * 110.36538 * 323.44549 * 12 11 9 38 38 H 1.08997 * 110.36863 * 85.77629 * 12 11 9 39 39 H 1.08999 * 110.96955 * 80.93686 * 13 12 11 40 40 H 1.09005 * 110.96157 * 204.65804 * 13 12 11 41 41 H 1.08994 * 109.98636 * 255.14995 * 16 14 13 42 42 H 1.08998 * 109.98788 * 16.46503 * 16 14 13 43 43 H 0.97010 * 119.99783 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.75821 * 120.92380 * 26 17 16 45 45 H 1.09001 * 109.75591 * 241.62952 * 26 17 16 46 46 H 1.08001 * 120.37206 * 359.95825 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2101 0.0000 4 6 3.5659 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0001 6 7 5.6352 -0.2343 0.0000 7 6 5.8244 -1.5279 -0.0001 8 6 4.5728 -2.1675 0.0003 9 6 4.3307 -3.6130 0.0009 10 8 3.1985 -4.0404 0.1323 11 7 5.3615 -4.4691 -0.1442 12 6 5.2531 -5.9371 -0.2214 13 6 6.6325 -6.4611 0.2486 14 6 7.5952 -5.4071 -0.3586 15 1 8.5675 -5.3735 0.1328 16 6 7.6842 -5.6525 -1.8767 17 7 7.5930 -4.3397 -2.5252 18 6 7.9746 -4.0636 -3.8111 19 1 8.3807 -4.8469 -4.4338 20 6 7.8386 -2.7771 -4.3143 21 7 7.3432 -1.8226 -3.5555 22 14 8.3598 -2.4003 -6.0681 23 1 7.2096 -2.6127 -6.9828 24 1 8.8096 -0.9879 -6.1581 25 1 9.4748 -3.3006 -6.4574 26 6 7.0293 -3.3694 -1.5813 27 6 6.7751 -4.0922 -0.2574 28 1 7.0943 -3.4905 0.5935 29 6 3.5960 -1.1527 0.0000 30 6 2.1953 -1.1782 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6763 2.1468 0.0004 35 1 4.0997 2.1496 -0.0001 36 1 6.7841 -2.0234 0.0039 37 1 4.4653 -6.2947 0.4416 38 1 5.0578 -6.2497 -1.2472 39 1 6.6972 -6.4675 1.3366 40 1 6.8322 -7.4525 -0.1580 41 1 8.6354 -6.1243 -2.1227 42 1 6.8587 -6.2862 -2.2008 43 1 7.2478 -0.9236 -3.9073 44 1 7.7342 -2.5523 -1.4278 45 1 6.0904 -2.9775 -1.9725 46 1 1.6663 -2.1197 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075910346.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:22 Heat of formation + Delta-G solvation = 98.431910 kcal Electronic energy + Delta-G solvation = -30668.460781 eV Core-core repulsion = 26753.535427 eV Total energy + Delta-G solvation = -3914.925354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.23276 -41.53589 -39.20801 -38.58809 -36.37292 -34.72489 -33.81727 -32.90546 -32.36857 -30.73747 -30.03838 -28.46486 -27.72356 -26.57779 -25.07979 -24.19333 -23.14212 -22.69372 -22.25417 -21.04964 -20.18501 -19.11587 -18.64233 -17.77951 -17.32128 -17.00009 -16.81709 -16.72146 -16.36117 -15.81999 -15.72185 -15.55352 -15.34100 -14.74564 -14.57882 -14.33026 -14.26071 -14.03342 -13.81897 -13.53497 -13.41326 -13.01908 -12.97410 -12.86299 -12.73516 -12.71065 -12.42471 -12.36456 -12.14562 -11.94942 -11.79883 -11.77007 -11.63076 -11.39460 -11.36050 -10.90219 -10.71921 -10.28995 -9.66509 -8.86854 -8.65188 -7.82876 -5.18578 -0.37430 -0.00253 1.10301 1.20716 1.42477 1.43815 1.52529 2.03416 2.16979 2.48134 2.56633 3.15077 3.34293 3.44980 3.47106 3.56298 3.68166 3.79969 3.85330 3.98567 4.05969 4.10947 4.12991 4.27434 4.41146 4.46740 4.51861 4.57178 4.58421 4.76919 4.79492 4.83701 4.84250 4.90384 4.96429 5.12033 5.13908 5.18020 5.26790 5.34264 5.36547 5.42502 5.46006 5.50038 5.56132 5.75129 5.82380 6.19913 6.41385 6.57531 7.10530 7.22847 7.80891 8.41847 9.24379 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010079 B = 0.004714 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2777.415123 B = 5938.332396 C = 7737.201661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 C -0.144 4.144 4 C 0.098 3.902 5 N -0.275 5.275 6 N -0.346 5.346 7 C 0.129 3.871 8 C -0.349 4.349 9 C 0.612 3.388 10 O -0.594 6.594 11 N -0.602 5.602 12 C 0.103 3.897 13 C -0.103 4.103 14 C -0.095 4.095 15 H 0.131 0.869 16 C 0.133 3.867 17 N -0.623 5.623 18 C -0.241 4.241 19 H 0.083 0.917 20 C -0.062 4.062 21 N -0.940 5.940 22 Si 0.972 3.028 23 H -0.294 1.294 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.186 3.814 27 C 0.101 3.899 28 H 0.100 0.900 29 C 0.152 3.848 30 C -0.149 4.149 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.209 0.791 35 H 0.200 0.800 36 H 0.206 0.794 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.048 0.952 42 H 0.019 0.981 43 H 0.241 0.759 44 H 0.025 0.975 45 H 0.011 0.989 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 2.407 12.511 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.027 4.027 3 C -0.165 4.165 4 C -0.028 4.028 5 N -0.038 5.038 6 N -0.167 5.167 7 C -0.051 4.051 8 C -0.363 4.363 9 C 0.406 3.594 10 O -0.478 6.478 11 N -0.334 5.334 12 C -0.018 4.018 13 C -0.141 4.141 14 C -0.115 4.115 15 H 0.149 0.851 16 C 0.008 3.992 17 N -0.350 5.350 18 C -0.370 4.370 19 H 0.101 0.899 20 C -0.255 4.255 21 N -0.588 5.588 22 Si 0.801 3.199 23 H -0.222 1.222 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.060 3.940 27 C -0.004 4.004 28 H 0.118 0.882 29 C 0.030 3.970 30 C -0.169 4.169 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.226 0.774 35 H 0.217 0.783 36 H 0.222 0.778 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.029 0.971 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.384 3.491 12.447 15.974 hybrid contribution 0.192 -0.378 -1.570 1.627 sum -9.192 3.112 10.877 14.577 Atomic orbital electron populations 1.20963 0.86557 1.04864 1.04549 1.20565 0.99257 0.91290 0.91635 1.21423 0.90868 1.00893 1.03295 1.22456 0.93316 0.88322 0.98718 1.46371 1.06084 1.06098 1.45291 1.77496 0.88987 1.17303 1.32905 1.24843 0.99489 0.90455 0.90317 1.19655 0.92347 0.93248 1.31089 1.16642 0.83181 0.84615 0.74997 1.90641 1.22565 1.79655 1.54940 1.48093 1.06196 1.07522 1.71557 1.22349 1.00184 0.78675 1.00622 1.22778 0.90436 0.98823 1.02065 1.23183 0.99617 0.92790 0.95861 0.85077 1.21583 0.98664 0.87515 0.91411 1.44501 1.73854 1.05920 1.10678 1.19399 1.34608 0.94554 0.88480 0.89895 1.25571 1.01995 0.96083 1.01864 1.70186 1.51540 1.00988 1.36110 0.85176 0.77850 0.76847 0.80061 1.22152 1.22294 1.18893 1.21108 0.95900 0.90421 0.86534 1.22687 0.80955 0.98707 0.98019 0.88210 1.19536 0.93893 0.86015 0.97526 1.20717 0.89048 1.01229 1.05860 0.88316 0.87913 0.91125 0.77381 0.78270 0.77800 0.90042 0.93364 0.88113 0.87176 0.93393 0.96312 0.94994 0.95699 0.97104 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.03 71.23 0.71 -0.69 16 2 C -0.02 -0.46 5.89 -19.82 -0.12 -0.57 16 3 C -0.14 -2.45 9.67 22.03 0.21 -2.23 16 4 C 0.10 2.33 11.17 83.31 0.93 3.26 16 5 N -0.27 -9.85 3.86 -187.28 -0.72 -10.57 16 6 N -0.35 -14.46 12.57 -56.62 -0.71 -15.17 16 7 C 0.13 5.52 9.05 85.42 0.77 6.29 16 8 C -0.35 -15.16 5.57 -19.90 -0.11 -15.27 16 9 C 0.61 27.03 7.50 86.41 0.65 27.68 16 10 O -0.59 -27.74 15.97 -4.43 -0.07 -27.81 16 11 N -0.60 -23.56 2.99 -791.87 -2.37 -25.93 16 12 C 0.10 3.34 6.45 86.84 0.56 3.90 16 13 C -0.10 -2.42 6.35 31.96 0.20 -2.22 16 14 C -0.10 -2.87 4.35 -8.92 -0.04 -2.91 16 15 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 16 C 0.13 5.18 6.45 86.69 0.56 5.74 16 17 N -0.62 -31.93 3.38 -699.19 -2.36 -34.29 16 18 C -0.24 -13.64 10.25 84.03 0.86 -12.78 16 19 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 20 C -0.06 -3.57 5.48 84.86 0.47 -3.11 16 21 N -0.94 -57.72 10.24 21.65 0.22 -57.50 16 22 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 C 0.19 9.18 3.08 86.34 0.27 9.44 16 27 C 0.10 3.77 2.73 45.72 0.12 3.89 16 28 H 0.10 3.34 6.39 -2.39 -0.02 3.33 16 29 C 0.15 5.89 6.76 39.49 0.27 6.16 16 30 C -0.15 -4.72 9.39 22.30 0.21 -4.51 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 35 H 0.20 3.35 8.06 -2.91 -0.02 3.32 16 36 H 0.21 8.55 3.21 -2.91 -0.01 8.55 16 37 H 0.08 2.49 8.00 -2.39 -0.02 2.47 16 38 H 0.05 1.73 7.18 -2.39 -0.02 1.71 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.11 2.06 8.08 -2.38 -0.02 2.05 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.02 0.75 6.52 -2.39 -0.02 0.74 16 43 H 0.24 14.75 8.31 -92.70 -0.77 13.98 16 44 H 0.03 1.37 6.39 -2.39 -0.02 1.35 16 45 H 0.01 0.64 5.84 -2.39 -0.01 0.62 16 46 H 0.14 4.80 7.15 -2.91 -0.02 4.78 16 Total: -1.00 -84.28 359.82 3.56 -80.72 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 1.02 Total: 19.36 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 6.53 Total: 22.08 kcal Atomic # 7 Polarization: -137.52 SS G_CDS: -5.94 Total: -143.46 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.07 Total: -27.81 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -84.28 3.56 -80.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075910346.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.150 kcal (2) G-P(sol) polarization free energy of solvation -84.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds