Wall clock time and date at job start Tue Mar 31 2020 23:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30452 * 125.98835 * 2 1 4 4 N 1.39939 * 108.89425 * 180.25751 * 3 2 1 5 5 H 0.97006 * 125.75199 * 179.76951 * 4 3 2 6 6 C 1.34256 * 108.49217 * 359.75336 * 4 3 2 7 7 C 1.38043 * 107.41945 * 359.97438 * 6 4 3 8 8 C 1.47423 * 126.41491 * 179.97438 * 7 6 4 9 9 O 1.21609 * 119.99758 * 155.41546 * 8 7 6 10 10 N 1.34781 * 120.00490 * 335.41580 * 8 7 6 11 11 C 1.47016 * 125.64907 * 174.55840 * 10 8 7 12 12 C 1.54328 * 107.26998 * 178.96068 * 11 10 8 13 13 H 1.09002 * 110.87090 * 96.24062 * 12 11 10 14 14 C 1.50694 * 110.72415 * 219.44487 * 12 11 10 15 15 C 1.38245 * 119.99802 * 53.24664 * 14 12 11 16 16 C 1.38236 * 119.99767 * 179.81458 * 15 14 12 17 17 C 1.38233 * 119.99943 * 0.41563 * 16 15 14 18 18 C 1.38237 * 120.00058 * 359.81608 * 17 16 15 19 19 C 1.38231 * 120.00164 * 233.52467 * 14 12 11 20 20 C 1.55163 * 102.94324 * 337.80719 * 12 11 10 21 21 H 1.08995 * 111.00036 * 277.39216 * 20 12 11 22 22 N 1.46497 * 111.00646 * 153.57086 * 20 12 11 23 23 C 1.36935 * 120.00135 * 154.99758 * 22 20 12 24 24 H 1.08001 * 119.99759 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00386 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99912 * 359.73079 * 25 23 22 27 27 Si 1.86800 * 120.00361 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47092 * 59.99948 * 27 25 23 29 29 H 1.48498 * 109.47408 * 180.02562 * 27 25 23 30 30 H 1.48509 * 109.46992 * 300.00249 * 27 25 23 31 31 C 1.47426 * 125.64165 * 354.58243 * 10 8 7 32 32 H 1.08995 * 109.47328 * 270.14633 * 1 2 3 33 33 H 1.09010 * 109.47119 * 30.14442 * 1 2 3 34 34 H 1.08994 * 109.47096 * 150.14649 * 1 2 3 35 35 H 1.08010 * 126.29069 * 179.97438 * 6 4 3 36 36 H 1.08996 * 109.88448 * 59.54701 * 11 10 8 37 37 H 1.09000 * 110.01294 * 298.45021 * 11 10 8 38 38 H 1.07999 * 119.99933 * 0.02562 * 15 14 12 39 39 H 1.07998 * 119.99697 * 180.21221 * 16 15 14 40 40 H 1.08004 * 120.00316 * 179.79154 * 17 16 15 41 41 H 1.08003 * 120.00075 * 179.97438 * 18 17 16 42 42 H 1.07997 * 120.00215 * 359.97338 * 19 14 12 43 43 H 0.97006 * 119.99833 * 335.00480 * 22 20 12 44 44 H 0.97001 * 120.00349 * 179.97438 * 26 25 23 45 45 H 1.09003 * 110.36785 * 85.27324 * 31 10 8 46 46 H 1.09000 * 110.37017 * 322.94298 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0060 5 1 4.3842 1.2301 -0.0104 6 6 3.6438 -0.6980 -0.0041 7 6 2.3372 -1.1432 0.0035 8 6 1.8915 -2.5485 0.0075 9 8 0.7972 -2.8380 0.4519 10 7 2.6968 -3.5123 -0.4815 11 6 2.4287 -4.9571 -0.4368 12 6 3.6088 -5.6640 -1.1365 13 1 4.3455 -6.0030 -0.4081 14 6 3.1191 -6.8177 -1.9731 15 6 2.1255 -6.6170 -2.9132 16 6 1.6790 -7.6746 -3.6833 17 6 2.2199 -8.9345 -3.5075 18 6 3.2101 -9.1360 -2.5642 19 6 3.6593 -8.0778 -1.7967 20 6 4.1999 -4.5460 -2.0355 21 1 3.6445 -4.4612 -2.9694 22 7 5.6234 -4.7770 -2.2933 23 6 6.2091 -4.2567 -3.4164 24 1 5.6217 -3.6756 -4.1119 25 6 7.5577 -4.4761 -3.6610 26 7 8.2748 -5.1798 -2.8107 27 14 8.3569 -3.7656 -5.1927 28 1 8.2315 -2.2861 -5.1755 29 1 9.7934 -4.1408 -5.2209 30 1 7.6808 -4.3058 -6.3996 31 6 3.9925 -3.2922 -1.1494 32 1 -0.3634 0.0026 1.0276 33 1 -0.3634 0.8888 -0.5161 34 1 -0.3633 -0.8912 -0.5115 35 1 4.5297 -1.3158 -0.0080 36 1 1.4999 -5.1783 -0.9625 37 1 2.3574 -5.2914 0.5982 38 1 1.7006 -5.6334 -3.0482 39 1 0.9052 -7.5171 -4.4201 40 1 1.8687 -9.7614 -4.1068 41 1 3.6325 -10.1205 -2.4265 42 1 4.4327 -8.2354 -1.0595 43 1 6.1510 -5.2988 -1.6685 44 1 9.2172 -5.3335 -2.9818 45 1 4.7910 -3.2129 -0.4116 46 1 3.9539 -2.3942 -1.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081156576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:55 Heat of formation + Delta-G solvation = 80.767087 kcal Electronic energy + Delta-G solvation = -29416.442766 eV Core-core repulsion = 25500.751408 eV Total energy + Delta-G solvation = -3915.691359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.44433 -39.89805 -38.64628 -37.06483 -34.15475 -33.02580 -32.69522 -30.98002 -30.66633 -30.45976 -28.33827 -27.82685 -27.47020 -24.51310 -23.51992 -22.60050 -22.12978 -20.99980 -20.49544 -19.68039 -19.35105 -17.55821 -17.49703 -16.69690 -16.33293 -15.87416 -15.15073 -15.09507 -14.79984 -14.56199 -14.46814 -14.23707 -13.67479 -13.39179 -13.25300 -13.07962 -12.96562 -12.83912 -12.76787 -12.71405 -12.48524 -12.12304 -12.07141 -11.66066 -11.52452 -11.01495 -10.95605 -10.94682 -10.79049 -10.62388 -10.38143 -10.20591 -9.89793 -9.68900 -9.55181 -9.12970 -8.82268 -8.63874 -8.43287 -8.26225 -7.15967 -5.92514 -3.23328 1.54482 1.63037 1.69048 2.16709 2.64291 3.23842 3.33852 3.39988 3.40437 3.50933 4.03377 4.43215 4.49629 4.67343 4.84357 4.95058 5.00913 5.14715 5.22424 5.22692 5.33671 5.36745 5.46079 5.48243 5.55768 5.61559 5.66820 5.70556 5.75729 5.79443 5.84904 5.92416 5.98917 6.08610 6.15757 6.19004 6.32632 6.34597 6.42963 6.53513 6.67336 6.74429 6.76904 6.95768 7.04132 7.27917 7.48648 7.56048 7.79336 8.24250 8.44276 9.36989 9.88711 10.24100 11.29048 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007616 B = 0.004434 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.381472 B = 6313.704614 C = 9223.242761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.130 3.870 3 N -0.305 5.305 4 N -0.463 5.463 5 H 0.444 0.556 6 C 0.110 3.890 7 C -0.284 4.284 8 C 0.607 3.393 9 O -0.550 6.550 10 N -0.612 5.612 11 C 0.123 3.877 12 C -0.076 4.076 13 H 0.093 0.907 14 C -0.050 4.050 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.106 4.106 20 C 0.185 3.815 21 H 0.072 0.928 22 N -0.706 5.706 23 C -0.249 4.249 24 H 0.071 0.929 25 C -0.004 4.004 26 N -0.928 5.928 27 Si 0.905 3.095 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 C 0.068 3.932 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.192 0.808 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.387 0.613 44 H 0.258 0.742 45 H 0.069 0.931 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 1.832 4.719 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.038 4.038 3 N -0.128 5.128 4 N -0.167 5.167 5 H 0.289 0.711 6 C -0.042 4.042 7 C -0.298 4.298 8 C 0.396 3.604 9 O -0.429 6.429 10 N -0.345 5.345 11 C 0.000 4.000 12 C -0.096 4.096 13 H 0.111 0.889 14 C -0.051 4.051 15 C -0.131 4.131 16 C -0.139 4.139 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.124 4.124 20 C 0.072 3.928 21 H 0.090 0.910 22 N -0.345 5.345 23 C -0.379 4.379 24 H 0.089 0.911 25 C -0.201 4.201 26 N -0.575 5.575 27 Si 0.736 3.264 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.211 1.211 31 C -0.058 4.058 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.208 0.792 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.222 0.778 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.511 3.071 4.810 12.848 hybrid contribution 1.547 -0.386 -0.728 1.753 sum -9.964 2.685 4.082 11.097 Atomic orbital electron populations 1.20232 0.85839 1.03404 1.03537 1.22417 0.97215 0.88761 0.95390 1.77105 0.86406 1.22482 1.26817 1.46099 1.07682 1.05606 1.57332 0.71147 1.23574 0.99563 0.85412 0.95660 1.20187 0.92185 0.94328 1.23133 1.16882 0.83345 0.83037 0.77097 1.90733 1.20935 1.82889 1.48390 1.48297 1.21796 1.06219 1.58200 1.21926 0.97964 0.79534 1.00543 1.21588 0.96565 0.94115 0.97375 0.88905 1.19523 0.95400 0.93787 0.96359 1.20967 0.97304 0.98837 0.95990 1.21038 1.00270 0.93087 0.99463 1.21046 0.97830 0.97058 0.98894 1.21069 0.97401 0.98809 0.96507 1.21035 0.99304 0.92268 0.99821 1.21377 0.87748 0.89037 0.94674 0.91035 1.42250 1.03086 1.62643 1.26546 1.19162 0.92374 1.27065 0.99330 0.91108 1.24722 0.96535 1.00309 0.98522 1.69639 1.07537 1.43624 1.36695 0.86307 0.78493 0.78638 0.82955 1.21212 1.21614 1.21115 1.23656 0.83337 1.02611 0.96176 0.90034 0.91077 0.89562 0.79163 0.91109 0.91611 0.86310 0.86541 0.86690 0.86475 0.86119 0.77819 0.93265 0.91296 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 9.81 36.00 0.35 -0.49 16 2 C 0.13 1.83 7.26 -82.02 -0.60 1.23 16 3 N -0.30 -4.16 12.63 33.89 0.43 -3.73 16 4 N -0.46 -5.16 7.29 30.85 0.22 -4.94 16 5 H 0.44 3.39 8.96 -182.71 -1.64 1.75 16 6 C 0.11 1.34 10.20 -16.56 -0.17 1.17 16 7 C -0.28 -4.11 5.79 -105.07 -0.61 -4.72 16 8 C 0.61 9.76 7.71 -12.52 -0.10 9.66 16 9 O -0.55 -10.06 15.97 5.27 0.08 -9.98 16 10 N -0.61 -9.20 3.33 -171.78 -0.57 -9.77 16 11 C 0.12 1.78 6.34 -3.07 -0.02 1.76 16 12 C -0.08 -1.15 2.82 -89.93 -0.25 -1.41 16 13 H 0.09 1.40 7.81 -51.93 -0.41 0.99 16 14 C -0.05 -0.76 4.95 -104.62 -0.52 -1.28 16 15 C -0.11 -1.65 8.11 -39.58 -0.32 -1.97 16 16 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 17 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 18 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.11 -1.57 9.68 -39.59 -0.38 -1.95 16 20 C 0.18 3.22 3.11 -65.78 -0.20 3.02 16 21 H 0.07 1.33 7.17 -51.93 -0.37 0.96 16 22 N -0.71 -15.48 5.24 -51.35 -0.27 -15.75 16 23 C -0.25 -6.22 9.96 -15.06 -0.15 -6.37 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 26 N -0.93 -25.87 13.06 55.49 0.72 -25.14 16 27 Si 0.91 21.03 29.55 -169.99 -5.02 16.01 16 28 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 C 0.07 1.04 4.89 -2.52 -0.01 1.03 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.09 1.08 7.28 -51.93 -0.38 0.70 16 35 H 0.19 1.99 5.92 -52.48 -0.31 1.68 16 36 H 0.07 1.03 6.64 -51.93 -0.35 0.69 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.12 1.65 7.29 -52.49 -0.38 1.27 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.12 1.67 7.98 -52.49 -0.42 1.25 16 43 H 0.39 9.09 7.76 -40.82 -0.32 8.77 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.07 1.04 7.30 -51.93 -0.38 0.66 16 46 H 0.07 1.12 6.93 -51.93 -0.36 0.76 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -31.32 380.43 -10.32 -41.64 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.39 Total: 12.54 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -4.27 Total: -6.63 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.54 Total: -59.33 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.32 -10.32 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081156576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.410 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds