Wall clock time and date at job start Tue Mar 31 2020 23:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30452 * 125.98835 * 2 1 4 4 N 1.39939 * 108.89425 * 180.25751 * 3 2 1 5 5 H 0.97006 * 125.75199 * 179.76951 * 4 3 2 6 6 C 1.34256 * 108.49217 * 359.75336 * 4 3 2 7 7 C 1.38043 * 107.41945 * 359.97438 * 6 4 3 8 8 C 1.47423 * 126.41491 * 179.97438 * 7 6 4 9 9 O 1.21609 * 119.99758 * 155.41546 * 8 7 6 10 10 N 1.34781 * 120.00490 * 335.41580 * 8 7 6 11 11 C 1.47016 * 125.64907 * 174.55840 * 10 8 7 12 12 C 1.54328 * 107.26998 * 178.96068 * 11 10 8 13 13 H 1.09002 * 110.87090 * 96.24062 * 12 11 10 14 14 C 1.50694 * 110.72415 * 219.44487 * 12 11 10 15 15 C 1.38245 * 119.99802 * 53.24664 * 14 12 11 16 16 C 1.38236 * 119.99767 * 179.81458 * 15 14 12 17 17 C 1.38233 * 119.99943 * 0.41563 * 16 15 14 18 18 C 1.38237 * 120.00058 * 359.81608 * 17 16 15 19 19 C 1.38231 * 120.00164 * 233.52467 * 14 12 11 20 20 C 1.55163 * 102.94324 * 337.80719 * 12 11 10 21 21 H 1.08995 * 111.00036 * 277.39216 * 20 12 11 22 22 N 1.46497 * 111.00646 * 153.57086 * 20 12 11 23 23 C 1.36935 * 120.00135 * 154.99758 * 22 20 12 24 24 H 1.08001 * 119.99759 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00386 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99912 * 359.73079 * 25 23 22 27 27 Si 1.86800 * 120.00361 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47092 * 59.99948 * 27 25 23 29 29 H 1.48498 * 109.47408 * 180.02562 * 27 25 23 30 30 H 1.48509 * 109.46992 * 300.00249 * 27 25 23 31 31 C 1.47426 * 125.64165 * 354.58243 * 10 8 7 32 32 H 1.08995 * 109.47328 * 270.14633 * 1 2 3 33 33 H 1.09010 * 109.47119 * 30.14442 * 1 2 3 34 34 H 1.08994 * 109.47096 * 150.14649 * 1 2 3 35 35 H 1.08010 * 126.29069 * 179.97438 * 6 4 3 36 36 H 1.08996 * 109.88448 * 59.54701 * 11 10 8 37 37 H 1.09000 * 110.01294 * 298.45021 * 11 10 8 38 38 H 1.07999 * 119.99933 * 0.02562 * 15 14 12 39 39 H 1.07998 * 119.99697 * 180.21221 * 16 15 14 40 40 H 1.08004 * 120.00316 * 179.79154 * 17 16 15 41 41 H 1.08003 * 120.00075 * 179.97438 * 18 17 16 42 42 H 1.07997 * 120.00215 * 359.97338 * 19 14 12 43 43 H 0.97006 * 119.99833 * 335.00480 * 22 20 12 44 44 H 0.97001 * 120.00349 * 179.97438 * 26 25 23 45 45 H 1.09003 * 110.36785 * 85.27324 * 31 10 8 46 46 H 1.09000 * 110.37017 * 322.94298 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0060 5 1 4.3842 1.2301 -0.0104 6 6 3.6438 -0.6980 -0.0041 7 6 2.3372 -1.1432 0.0035 8 6 1.8915 -2.5485 0.0075 9 8 0.7972 -2.8380 0.4519 10 7 2.6968 -3.5123 -0.4815 11 6 2.4287 -4.9571 -0.4368 12 6 3.6088 -5.6640 -1.1365 13 1 4.3455 -6.0030 -0.4081 14 6 3.1191 -6.8177 -1.9731 15 6 2.1255 -6.6170 -2.9132 16 6 1.6790 -7.6746 -3.6833 17 6 2.2199 -8.9345 -3.5075 18 6 3.2101 -9.1360 -2.5642 19 6 3.6593 -8.0778 -1.7967 20 6 4.1999 -4.5460 -2.0355 21 1 3.6445 -4.4612 -2.9694 22 7 5.6234 -4.7770 -2.2933 23 6 6.2091 -4.2567 -3.4164 24 1 5.6217 -3.6756 -4.1119 25 6 7.5577 -4.4761 -3.6610 26 7 8.2748 -5.1798 -2.8107 27 14 8.3569 -3.7656 -5.1927 28 1 8.2315 -2.2861 -5.1755 29 1 9.7934 -4.1408 -5.2209 30 1 7.6808 -4.3058 -6.3996 31 6 3.9925 -3.2922 -1.1494 32 1 -0.3634 0.0026 1.0276 33 1 -0.3634 0.8888 -0.5161 34 1 -0.3633 -0.8912 -0.5115 35 1 4.5297 -1.3158 -0.0080 36 1 1.4999 -5.1783 -0.9625 37 1 2.3574 -5.2914 0.5982 38 1 1.7006 -5.6334 -3.0482 39 1 0.9052 -7.5171 -4.4201 40 1 1.8687 -9.7614 -4.1068 41 1 3.6325 -10.1205 -2.4265 42 1 4.4327 -8.2354 -1.0595 43 1 6.1510 -5.2988 -1.6685 44 1 9.2172 -5.3335 -2.9818 45 1 4.7910 -3.2129 -0.4116 46 1 3.9539 -2.3942 -1.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081156576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:55 Heat of formation + Delta-G solvation = 62.055584 kcal Electronic energy + Delta-G solvation = -29417.254158 eV Core-core repulsion = 25500.751408 eV Total energy + Delta-G solvation = -3916.502750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.48486 -41.10737 -39.80233 -38.36279 -35.84725 -34.10096 -33.89744 -32.67504 -31.73464 -31.52777 -29.58616 -28.94733 -28.73857 -26.01915 -25.00483 -23.71623 -23.20346 -22.32329 -21.58528 -20.92056 -20.43243 -19.22910 -18.65003 -17.94784 -17.59427 -17.07472 -16.49601 -16.28298 -16.08663 -15.77955 -15.66524 -15.36434 -15.23876 -14.83291 -14.51050 -14.24662 -14.14307 -14.09567 -13.82036 -13.76258 -13.70693 -13.30029 -13.12892 -13.05731 -12.93864 -12.67349 -12.53968 -12.21080 -12.02069 -11.94133 -11.81893 -11.72015 -11.57064 -11.02580 -10.91129 -10.54129 -9.92627 -9.72819 -9.59872 -9.49821 -8.96077 -7.91536 -5.20077 0.51549 0.54256 0.60534 1.07675 1.50542 1.52346 1.57433 1.71184 2.04840 2.32308 2.58239 2.93296 3.38950 3.41565 3.59784 3.70905 3.80680 3.82631 4.12094 4.14439 4.19505 4.20553 4.24391 4.33590 4.36396 4.39381 4.48388 4.56681 4.69852 4.74813 4.77192 4.82745 4.87934 4.91594 4.95063 4.96987 5.19170 5.24208 5.28542 5.34632 5.44815 5.56400 5.66811 5.70335 5.82316 6.20273 6.22009 6.28722 6.46186 6.57219 7.19610 7.38013 8.07522 8.33290 9.30546 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007616 B = 0.004434 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.381472 B = 6313.704614 C = 9223.242761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.119 3.881 3 N -0.319 5.319 4 N -0.448 5.448 5 H 0.460 0.540 6 C 0.126 3.874 7 C -0.312 4.312 8 C 0.607 3.393 9 O -0.577 6.577 10 N -0.608 5.608 11 C 0.128 3.872 12 C -0.062 4.062 13 H 0.092 0.908 14 C -0.068 4.068 15 C -0.127 4.127 16 C -0.126 4.126 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.125 4.125 20 C 0.182 3.818 21 H 0.061 0.939 22 N -0.713 5.713 23 C -0.238 4.238 24 H 0.074 0.926 25 C -0.060 4.060 26 N -0.961 5.961 27 Si 0.959 3.041 28 H -0.277 1.277 29 H -0.299 1.299 30 H -0.285 1.285 31 C 0.083 3.917 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.209 0.791 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.122 0.878 43 H 0.379 0.621 44 H 0.250 0.750 45 H 0.076 0.924 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 2.192 4.227 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 N -0.143 5.143 4 N -0.154 5.154 5 H 0.308 0.692 6 C -0.028 4.028 7 C -0.327 4.327 8 C 0.398 3.602 9 O -0.458 6.458 10 N -0.341 5.341 11 C 0.005 3.995 12 C -0.082 4.082 13 H 0.110 0.890 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.144 4.144 17 C -0.150 4.150 18 C -0.145 4.145 19 C -0.143 4.143 20 C 0.071 3.929 21 H 0.079 0.921 22 N -0.352 5.352 23 C -0.369 4.369 24 H 0.092 0.908 25 C -0.253 4.253 26 N -0.611 5.611 27 Si 0.789 3.211 28 H -0.203 1.203 29 H -0.225 1.225 30 H -0.211 1.211 31 C -0.043 4.043 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.212 0.788 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.112 3.474 4.316 13.319 hybrid contribution 1.639 -0.523 -0.578 1.815 sum -10.473 2.951 3.738 11.505 Atomic orbital electron populations 1.20255 0.84856 1.03667 1.04011 1.22739 0.98175 0.88674 0.95237 1.77072 0.87278 1.22582 1.27323 1.46140 1.07670 1.05621 1.55963 0.69230 1.23741 0.99250 0.85811 0.93983 1.20201 0.93401 0.93637 1.25445 1.17100 0.82930 0.83666 0.76537 1.90712 1.22035 1.83384 1.49685 1.48253 1.21530 1.06379 1.57939 1.21909 0.97578 0.79190 1.00841 1.21421 0.96465 0.93538 0.96773 0.88995 1.19602 0.96229 0.93967 0.97072 1.21100 0.97524 0.99448 0.96405 1.21374 1.00580 0.92959 0.99483 1.21426 0.97153 0.97763 0.98620 1.21395 0.97455 0.99420 0.96204 1.21226 0.99799 0.92720 1.00585 1.21442 0.85393 0.90986 0.95124 0.92108 1.42283 1.04639 1.62569 1.25677 1.19461 0.92341 1.25471 0.99667 0.90806 1.25332 0.97334 1.01641 1.00974 1.69771 1.07250 1.45742 1.38355 0.85435 0.77023 0.78376 0.80229 1.20294 1.22549 1.21135 1.23358 0.83684 1.01291 0.95954 0.89436 0.89377 0.90638 0.77497 0.91197 0.90912 0.86297 0.84312 0.83919 0.84416 0.85979 0.78843 0.94074 0.90562 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 9.81 71.23 0.70 -0.88 16 2 C 0.12 3.23 7.26 43.51 0.32 3.55 16 3 N -0.32 -8.20 12.63 -46.68 -0.59 -8.79 16 4 N -0.45 -9.08 7.29 -56.31 -0.41 -9.49 16 5 H 0.46 5.93 8.96 -213.42 -1.91 4.01 16 6 C 0.13 2.82 10.20 84.28 0.86 3.68 16 7 C -0.31 -8.70 5.79 -20.15 -0.12 -8.82 16 8 C 0.61 19.12 7.71 86.66 0.67 19.79 16 9 O -0.58 -20.98 15.97 -4.06 -0.06 -21.05 16 10 N -0.61 -17.79 3.33 -815.64 -2.71 -20.50 16 11 C 0.13 3.61 6.34 86.73 0.55 4.16 16 12 C -0.06 -1.86 2.82 -10.35 -0.03 -1.88 16 13 H 0.09 2.76 7.81 -2.39 -0.02 2.74 16 14 C -0.07 -2.06 4.95 -19.87 -0.10 -2.15 16 15 C -0.13 -3.61 8.11 22.27 0.18 -3.43 16 16 C -0.13 -3.16 10.05 22.27 0.22 -2.93 16 17 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 18 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 19 C -0.13 -3.65 9.68 22.27 0.22 -3.43 16 20 C 0.18 6.25 3.11 46.39 0.14 6.39 16 21 H 0.06 2.24 7.17 -2.39 -0.02 2.22 16 22 N -0.71 -31.10 5.24 -316.37 -1.66 -32.76 16 23 C -0.24 -11.78 9.96 84.03 0.84 -10.95 16 24 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 25 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 26 N -0.96 -54.04 13.06 21.65 0.28 -53.76 16 27 Si 0.96 43.04 29.55 68.60 2.03 45.07 16 28 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 29 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 30 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 31 C 0.08 2.44 4.89 86.86 0.42 2.86 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.87 7.28 -2.39 -0.02 1.86 16 35 H 0.21 3.85 5.92 -2.91 -0.02 3.83 16 36 H 0.07 2.01 6.64 -2.39 -0.02 2.00 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.12 3.28 7.29 -2.91 -0.02 3.26 16 39 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.12 3.39 7.98 -2.91 -0.02 3.37 16 43 H 0.38 17.87 7.76 -92.70 -0.72 17.15 16 44 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.08 2.18 7.30 -2.39 -0.02 2.16 16 46 H 0.08 2.22 6.93 -2.39 -0.02 2.21 16 Total: -1.00 -66.12 380.43 1.06 -65.06 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -1.60 Total: 38.85 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.79 Total: -2.63 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.09 Total: -125.30 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.05 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -66.12 1.06 -65.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081156576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.117 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds