Wall clock time and date at job start Tue Mar 31 2020 23:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35450 * 126.38748 * 2 1 4 4 N 1.33179 * 108.61739 * 180.02562 * 3 2 1 5 5 C 1.32653 * 109.12926 * 0.02562 * 4 3 2 6 6 C 1.40648 * 132.14668 * 180.31571 * 5 4 3 7 7 C 1.38436 * 119.08625 * 180.19048 * 6 5 4 8 8 C 1.47649 * 120.37547 * 179.73530 * 7 6 5 9 9 O 1.21591 * 120.00060 * 359.73236 * 8 7 6 10 10 N 1.34778 * 120.00448 * 179.72726 * 8 7 6 11 11 C 1.46504 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.68136 * 37.01252 * 11 10 8 13 13 C 1.55475 * 110.60770 * 160.15293 * 11 10 8 14 14 C 1.55848 * 103.32492 * 118.41867 * 13 11 10 15 15 H 1.08998 * 116.12899 * 159.23369 * 14 13 11 16 16 C 1.56854 * 105.77510 * 288.56084 * 14 13 11 17 17 C 1.54858 * 103.35524 * 71.45566 * 16 14 13 18 18 C 1.55837 * 110.62408 * 274.02727 * 11 10 8 19 19 H 1.09003 * 115.56577 * 82.69509 * 18 11 10 20 20 N 1.50229 * 101.05130 * 33.01999 * 14 13 11 21 21 C 1.36946 * 130.83735 * 126.07020 * 20 14 13 22 22 H 1.08001 * 119.99777 * 179.66189 * 21 20 14 23 23 C 1.38805 * 119.99877 * 359.66218 * 21 20 14 24 24 N 1.31618 * 120.00131 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00109 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.46967 * 89.99591 * 25 23 21 27 27 H 1.48497 * 109.47044 * 210.00236 * 25 23 21 28 28 H 1.48508 * 109.46579 * 329.99943 * 25 23 21 29 29 C 1.41780 * 119.25392 * 359.46481 * 7 6 5 30 30 C 1.34539 * 120.15012 * 0.27625 * 29 7 6 31 31 N 1.36432 * 126.38806 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47266 * 269.99270 * 1 2 3 33 33 H 1.09002 * 109.47730 * 29.99441 * 1 2 3 34 34 H 1.09002 * 109.47049 * 149.99283 * 1 2 3 35 35 H 1.07998 * 125.68887 * 0.03243 * 3 2 1 36 36 H 1.07999 * 120.45960 * 359.95837 * 6 5 4 37 37 H 0.96991 * 119.99736 * 359.97438 * 10 8 7 38 38 H 1.09001 * 110.61424 * 0.02562 * 13 11 10 39 39 H 1.09004 * 110.75532 * 236.89958 * 13 11 10 40 40 H 1.09000 * 110.43789 * 313.10823 * 16 14 13 41 41 H 1.08996 * 111.04377 * 190.09588 * 16 14 13 42 42 H 1.08999 * 110.63002 * 241.78564 * 17 16 14 43 43 H 1.08996 * 110.76143 * 118.83089 * 17 16 14 44 44 H 0.97006 * 120.00033 * 179.97438 * 24 23 21 45 45 H 1.08003 * 119.92232 * 180.29288 * 29 7 6 46 46 H 1.08000 * 119.52287 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3105 1.0904 0.0000 4 7 3.5788 0.6839 -0.0006 5 6 3.6103 -0.6422 -0.0015 6 6 4.6751 -1.5610 0.0034 7 6 4.3944 -2.9166 -0.0032 8 6 5.4904 -3.9060 -0.0043 9 8 6.6473 -3.5318 -0.0042 10 7 5.2085 -5.2240 -0.0052 11 6 6.2960 -6.2057 -0.0056 12 1 7.1272 -5.8596 0.6087 13 6 5.7848 -7.5887 0.4875 14 6 6.0251 -8.5188 -0.7397 15 1 6.0738 -9.5873 -0.5300 16 6 4.9623 -8.0932 -1.8119 17 6 5.4742 -6.7138 -2.2950 18 6 6.7723 -6.4965 -1.4606 19 1 7.4832 -5.7815 -1.8746 20 7 7.2670 -7.9086 -1.3247 21 6 8.4758 -8.4685 -1.6421 22 1 9.2590 -7.8577 -2.0664 23 6 8.6945 -9.8208 -1.4184 24 7 7.7398 -10.5652 -0.9018 25 14 10.3437 -10.5844 -1.8507 26 1 11.2515 -10.4977 -0.6788 27 1 10.1477 -12.0090 -2.2209 28 1 10.9426 -9.8531 -2.9961 29 6 3.0426 -3.3442 -0.0032 30 6 2.0475 -2.4388 -0.0024 31 7 2.3164 -1.0983 -0.0005 32 1 -0.3634 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3633 -0.8899 -0.5140 35 1 1.9782 2.1180 0.0005 36 1 5.6978 -1.2138 0.0084 37 1 4.2857 -5.5225 -0.0048 38 1 4.7234 -7.5411 0.7308 39 1 6.3622 -7.9300 1.3468 40 1 3.9773 -7.9987 -1.3548 41 1 4.9341 -8.8033 -2.6384 42 1 4.7431 -5.9352 -2.0775 43 1 5.7021 -6.7379 -3.3606 44 1 7.8925 -11.5104 -0.7459 45 1 2.8113 -4.3992 -0.0035 46 1 1.0214 -2.7758 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095413905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:04 Heat of formation + Delta-G solvation = 107.092971 kcal Electronic energy + Delta-G solvation = -29189.387200 eV Core-core repulsion = 25274.837418 eV Total energy + Delta-G solvation = -3914.549783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.16610 -40.17582 -38.62303 -37.12663 -34.21524 -34.08982 -32.41114 -31.66985 -30.34613 -29.37931 -29.03853 -27.92541 -26.83494 -24.55323 -23.85899 -23.44817 -21.49702 -21.44938 -20.68829 -19.57260 -18.67053 -17.94050 -17.61226 -17.04541 -16.61177 -16.39524 -15.69894 -15.12971 -14.96836 -14.81655 -14.49428 -14.19331 -13.90639 -13.87824 -13.70470 -13.49033 -13.47279 -12.91406 -12.36949 -12.34354 -12.10732 -12.08314 -11.82607 -11.54093 -11.11695 -11.00744 -10.94652 -10.91813 -10.85270 -10.41292 -10.23568 -10.11270 -9.96176 -9.80694 -9.45013 -9.28620 -9.17345 -8.96239 -8.60637 -8.04388 -6.94093 -5.75050 -3.12905 0.24312 0.73805 2.19342 2.37792 2.83086 3.17546 3.39214 3.44519 3.45899 3.53347 3.93341 4.13320 4.22662 4.41804 4.49883 4.59320 4.67090 4.91112 5.05092 5.07658 5.16114 5.17439 5.33736 5.35966 5.45329 5.51531 5.70867 5.74968 5.78078 5.81748 5.92463 6.02773 6.05986 6.08359 6.24636 6.27036 6.28038 6.48985 6.54652 6.60248 6.67897 6.77167 6.92001 6.95393 7.21534 7.50071 7.51832 7.65262 7.77436 8.13977 8.34301 9.08413 9.70947 10.50595 11.34594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.002339 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.422271 B =11970.459010 C =12486.267140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.065 4.065 3 C 0.034 3.966 4 N -0.477 5.477 5 C 0.209 3.791 6 C -0.002 4.002 7 C -0.119 4.119 8 C 0.557 3.443 9 O -0.531 6.531 10 N -0.702 5.702 11 C 0.128 3.872 12 H 0.086 0.914 13 C -0.138 4.138 14 C 0.154 3.846 15 H 0.155 0.845 16 C -0.137 4.137 17 C -0.130 4.130 18 C 0.128 3.872 19 H 0.086 0.914 20 N -0.590 5.590 21 C -0.209 4.209 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.917 3.083 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.114 4.114 30 C 0.047 3.953 31 N -0.352 5.352 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.394 0.606 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.254 0.746 45 H 0.155 0.845 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.907 16.023 3.086 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.180 4.180 3 C -0.120 4.120 4 N -0.196 5.196 5 C -0.032 4.032 6 C -0.024 4.024 7 C -0.128 4.128 8 C 0.343 3.657 9 O -0.409 6.409 10 N -0.353 5.353 11 C 0.022 3.978 12 H 0.104 0.896 13 C -0.178 4.178 14 C 0.047 3.953 15 H 0.172 0.828 16 C -0.177 4.177 17 C -0.170 4.170 18 C 0.019 3.981 19 H 0.104 0.896 20 N -0.310 5.310 21 C -0.337 4.337 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.748 3.252 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.134 4.134 30 C -0.074 4.074 31 N -0.025 5.025 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.199 0.801 36 H 0.183 0.817 37 H 0.229 0.771 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.172 0.828 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.169 16.494 3.053 24.003 hybrid contribution -0.464 -0.991 -0.259 1.125 sum -17.633 15.503 2.794 23.645 Atomic orbital electron populations 1.20199 0.86328 1.03627 1.02875 1.21345 0.94895 0.85278 1.16461 1.22383 0.87834 0.98740 1.03052 1.70684 1.21826 1.06129 1.20991 1.20725 0.83598 0.90920 1.07996 1.20720 0.98376 0.89483 0.93784 1.20074 0.93670 0.93690 1.05377 1.17837 0.87940 0.82534 0.77421 1.90820 1.20516 1.79878 1.49664 1.46122 1.10458 1.05250 1.73496 1.22825 0.88222 0.87080 0.99659 0.89639 1.23366 0.98561 0.94834 1.01048 1.23963 0.83344 1.00061 0.87951 0.82838 1.23221 0.97620 0.96361 1.00469 1.22895 0.97857 0.96791 0.99430 1.23193 0.93495 0.88752 0.92655 0.89635 1.46491 1.10871 1.02061 1.71596 1.19072 0.88511 0.92058 1.34088 0.90273 1.24695 0.98237 0.96033 1.01803 1.69427 1.31588 1.06061 1.50171 0.86022 0.82835 0.78370 0.77997 1.21625 1.21699 1.20746 1.20856 0.90918 1.00202 1.01473 1.21384 1.01309 0.80211 1.04510 1.42718 1.08893 1.05732 1.45112 0.90798 0.89600 0.91617 0.80076 0.81654 0.77089 0.92749 0.91353 0.93822 0.92592 0.93244 0.93000 0.93561 0.82797 0.81638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.30 36.01 0.37 0.04 16 2 C -0.07 -0.57 7.02 -81.54 -0.57 -1.14 16 3 C 0.03 0.33 11.75 -17.96 -0.21 0.12 16 4 N -0.48 -6.33 11.31 -12.80 -0.14 -6.47 16 5 C 0.21 2.66 7.79 -155.97 -1.22 1.44 16 6 C 0.00 -0.03 9.70 -38.60 -0.37 -0.40 16 7 C -0.12 -1.42 5.90 -104.63 -0.62 -2.03 16 8 C 0.56 8.28 7.77 -12.42 -0.10 8.18 16 9 O -0.53 -10.04 16.10 5.29 0.09 -9.96 16 10 N -0.70 -9.72 3.62 -52.07 -0.19 -9.90 16 11 C 0.13 2.28 3.10 -65.10 -0.20 2.08 16 12 H 0.09 1.73 7.71 -51.93 -0.40 1.33 16 13 C -0.14 -2.48 6.25 -23.90 -0.15 -2.63 16 14 C 0.15 3.32 4.72 -62.24 -0.29 3.03 16 15 H 0.15 3.84 5.52 -51.93 -0.29 3.55 16 16 C -0.14 -2.53 6.50 -23.67 -0.15 -2.68 16 17 C -0.13 -2.32 6.34 -24.23 -0.15 -2.47 16 18 C 0.13 2.62 5.29 -62.80 -0.33 2.29 16 19 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 20 N -0.59 -14.36 2.97 -145.22 -0.43 -14.79 16 21 C -0.21 -5.70 10.59 -15.06 -0.16 -5.86 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.92 -25.78 10.46 55.49 0.58 -25.20 16 25 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C -0.11 -0.96 9.48 -39.54 -0.37 -1.33 16 30 C 0.05 0.36 10.80 -16.68 -0.18 0.18 16 31 N -0.35 -3.58 2.94 -58.55 -0.17 -3.76 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.25 8.12 -51.93 -0.42 -0.18 16 35 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.17 2.17 7.67 -52.49 -0.40 1.77 16 37 H 0.39 4.21 6.12 -40.82 -0.25 3.96 16 38 H 0.05 0.79 7.41 -51.93 -0.38 0.41 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.15 0.87 6.46 -52.48 -0.34 0.53 16 46 H 0.17 0.68 8.04 -52.49 -0.42 0.26 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -33.36 371.62 -10.67 -44.03 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.16 Total: 5.24 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -4.81 Total: -1.62 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.36 Total: -60.13 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.36 -10.67 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095413905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.118 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds