Wall clock time and date at job start Tue Mar 31 2020 23:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35450 * 126.38748 * 2 1 4 4 N 1.33179 * 108.61739 * 180.02562 * 3 2 1 5 5 C 1.32653 * 109.12926 * 0.02562 * 4 3 2 6 6 C 1.40648 * 132.14668 * 180.31571 * 5 4 3 7 7 C 1.38436 * 119.08625 * 180.19048 * 6 5 4 8 8 C 1.47649 * 120.37547 * 179.73530 * 7 6 5 9 9 O 1.21591 * 120.00060 * 359.73236 * 8 7 6 10 10 N 1.34778 * 120.00448 * 179.72726 * 8 7 6 11 11 C 1.46504 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.68136 * 37.01252 * 11 10 8 13 13 C 1.55475 * 110.60770 * 160.15293 * 11 10 8 14 14 C 1.55848 * 103.32492 * 118.41867 * 13 11 10 15 15 H 1.08998 * 116.12899 * 159.23369 * 14 13 11 16 16 C 1.56854 * 105.77510 * 288.56084 * 14 13 11 17 17 C 1.54858 * 103.35524 * 71.45566 * 16 14 13 18 18 C 1.55837 * 110.62408 * 274.02727 * 11 10 8 19 19 H 1.09003 * 115.56577 * 82.69509 * 18 11 10 20 20 N 1.50229 * 101.05130 * 33.01999 * 14 13 11 21 21 C 1.36946 * 130.83735 * 126.07020 * 20 14 13 22 22 H 1.08001 * 119.99777 * 179.66189 * 21 20 14 23 23 C 1.38805 * 119.99877 * 359.66218 * 21 20 14 24 24 N 1.31618 * 120.00131 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00109 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.46967 * 89.99591 * 25 23 21 27 27 H 1.48497 * 109.47044 * 210.00236 * 25 23 21 28 28 H 1.48508 * 109.46579 * 329.99943 * 25 23 21 29 29 C 1.41780 * 119.25392 * 359.46481 * 7 6 5 30 30 C 1.34539 * 120.15012 * 0.27625 * 29 7 6 31 31 N 1.36432 * 126.38806 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47266 * 269.99270 * 1 2 3 33 33 H 1.09002 * 109.47730 * 29.99441 * 1 2 3 34 34 H 1.09002 * 109.47049 * 149.99283 * 1 2 3 35 35 H 1.07998 * 125.68887 * 0.03243 * 3 2 1 36 36 H 1.07999 * 120.45960 * 359.95837 * 6 5 4 37 37 H 0.96991 * 119.99736 * 359.97438 * 10 8 7 38 38 H 1.09001 * 110.61424 * 0.02562 * 13 11 10 39 39 H 1.09004 * 110.75532 * 236.89958 * 13 11 10 40 40 H 1.09000 * 110.43789 * 313.10823 * 16 14 13 41 41 H 1.08996 * 111.04377 * 190.09588 * 16 14 13 42 42 H 1.08999 * 110.63002 * 241.78564 * 17 16 14 43 43 H 1.08996 * 110.76143 * 118.83089 * 17 16 14 44 44 H 0.97006 * 120.00033 * 179.97438 * 24 23 21 45 45 H 1.08003 * 119.92232 * 180.29288 * 29 7 6 46 46 H 1.08000 * 119.52287 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3105 1.0904 0.0000 4 7 3.5788 0.6839 -0.0006 5 6 3.6103 -0.6422 -0.0015 6 6 4.6751 -1.5610 0.0034 7 6 4.3944 -2.9166 -0.0032 8 6 5.4904 -3.9060 -0.0043 9 8 6.6473 -3.5318 -0.0042 10 7 5.2085 -5.2240 -0.0052 11 6 6.2960 -6.2057 -0.0056 12 1 7.1272 -5.8596 0.6087 13 6 5.7848 -7.5887 0.4875 14 6 6.0251 -8.5188 -0.7397 15 1 6.0738 -9.5873 -0.5300 16 6 4.9623 -8.0932 -1.8119 17 6 5.4742 -6.7138 -2.2950 18 6 6.7723 -6.4965 -1.4606 19 1 7.4832 -5.7815 -1.8746 20 7 7.2670 -7.9086 -1.3247 21 6 8.4758 -8.4685 -1.6421 22 1 9.2590 -7.8577 -2.0664 23 6 8.6945 -9.8208 -1.4184 24 7 7.7398 -10.5652 -0.9018 25 14 10.3437 -10.5844 -1.8507 26 1 11.2515 -10.4977 -0.6788 27 1 10.1477 -12.0090 -2.2209 28 1 10.9426 -9.8531 -2.9961 29 6 3.0426 -3.3442 -0.0032 30 6 2.0475 -2.4388 -0.0024 31 7 2.3164 -1.0983 -0.0005 32 1 -0.3634 -0.0001 1.0276 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3633 -0.8899 -0.5140 35 1 1.9782 2.1180 0.0005 36 1 5.6978 -1.2138 0.0084 37 1 4.2857 -5.5225 -0.0048 38 1 4.7234 -7.5411 0.7308 39 1 6.3622 -7.9300 1.3468 40 1 3.9773 -7.9987 -1.3548 41 1 4.9341 -8.8033 -2.6384 42 1 4.7431 -5.9352 -2.0775 43 1 5.7021 -6.7379 -3.3606 44 1 7.8925 -11.5104 -0.7459 45 1 2.8113 -4.3992 -0.0035 46 1 1.0214 -2.7758 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095413905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:04 Heat of formation + Delta-G solvation = 87.334796 kcal Electronic energy + Delta-G solvation = -29190.243979 eV Core-core repulsion = 25274.837418 eV Total energy + Delta-G solvation = -3915.406561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.90102 -41.53521 -39.99521 -38.00171 -35.56603 -34.98626 -34.24432 -32.36726 -31.08538 -30.97634 -30.68239 -29.33218 -27.68835 -26.18800 -24.94337 -24.26962 -22.85153 -22.19190 -21.93112 -21.21168 -20.18103 -19.13979 -18.67948 -18.32650 -17.55130 -17.13967 -16.96071 -16.74759 -16.44582 -15.90222 -15.72507 -15.54506 -15.35467 -14.68921 -14.56816 -14.17444 -14.05784 -13.93177 -13.81504 -13.47630 -13.29551 -13.21403 -12.90289 -12.83724 -12.83392 -12.77514 -12.59342 -12.35955 -11.99280 -11.88779 -11.87484 -11.55018 -11.26654 -11.17239 -11.08968 -10.94989 -10.80148 -10.05633 -9.88481 -8.86647 -8.75849 -7.79564 -5.18254 -0.61257 0.03730 1.46024 1.47190 1.53473 1.55076 1.59048 1.92613 1.99937 2.49613 2.58106 3.18803 3.33941 3.41823 3.51768 3.59402 3.72521 3.92186 3.95940 4.08518 4.10570 4.16171 4.35836 4.37172 4.44114 4.50307 4.52835 4.61607 4.72114 4.77460 4.82356 4.82633 4.95637 4.99755 5.05724 5.08739 5.14332 5.16986 5.20869 5.33936 5.39846 5.48318 5.54723 5.58714 5.75204 5.90300 6.01942 6.29500 6.54988 6.77349 7.06619 7.20187 7.69640 8.55427 9.26989 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.002339 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.422271 B =11970.459010 C =12486.267140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.049 4.049 3 C 0.011 3.989 4 N -0.518 5.518 5 C 0.179 3.821 6 C -0.025 4.025 7 C -0.117 4.117 8 C 0.558 3.442 9 O -0.581 6.581 10 N -0.684 5.684 11 C 0.147 3.853 12 H 0.054 0.946 13 C -0.122 4.122 14 C 0.137 3.863 15 H 0.121 0.879 16 C -0.125 4.125 17 C -0.116 4.116 18 C 0.116 3.884 19 H 0.061 0.939 20 N -0.619 5.619 21 C -0.224 4.224 22 H 0.068 0.932 23 C -0.062 4.062 24 N -0.942 5.942 25 Si 0.973 3.027 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.278 1.278 29 C -0.117 4.117 30 C 0.060 3.940 31 N -0.356 5.356 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.207 0.793 36 H 0.142 0.858 37 H 0.416 0.584 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.034 0.966 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.249 0.751 45 H 0.192 0.808 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.707 16.526 3.293 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.164 4.164 3 C -0.141 4.141 4 N -0.239 5.239 5 C -0.062 4.062 6 C -0.046 4.046 7 C -0.126 4.126 8 C 0.346 3.654 9 O -0.461 6.461 10 N -0.336 5.336 11 C 0.040 3.960 12 H 0.072 0.928 13 C -0.162 4.162 14 C 0.031 3.969 15 H 0.138 0.862 16 C -0.164 4.164 17 C -0.155 4.155 18 C 0.008 3.992 19 H 0.079 0.921 20 N -0.341 5.341 21 C -0.353 4.353 22 H 0.086 0.914 23 C -0.255 4.255 24 N -0.591 5.591 25 Si 0.803 3.197 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.204 1.204 29 C -0.137 4.137 30 C -0.060 4.060 31 N -0.029 5.029 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.224 0.776 36 H 0.160 0.840 37 H 0.256 0.744 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.209 0.791 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -22.034 17.016 3.261 28.030 hybrid contribution 0.972 -0.995 -0.315 1.426 sum -21.063 16.022 2.946 26.627 Atomic orbital electron populations 1.20406 0.82806 1.05344 1.04264 1.22089 0.96662 0.84290 1.13378 1.22991 0.87064 1.00667 1.03386 1.70605 1.24102 1.07044 1.22132 1.20591 0.84762 0.90902 1.09909 1.20570 0.97845 0.90465 0.95739 1.19824 0.94469 0.92136 1.06166 1.18292 0.88017 0.83034 0.76030 1.90806 1.22991 1.80662 1.51688 1.45756 1.10549 1.04207 1.73092 1.22243 0.88685 0.87960 0.97131 0.92772 1.23194 1.01207 0.93181 0.98585 1.23909 0.83449 0.99079 0.90424 0.86188 1.23110 0.98838 0.95585 0.98837 1.22800 0.96910 0.97737 0.98077 1.23333 0.94359 0.86710 0.94804 0.92074 1.46749 1.10965 1.04039 1.72353 1.19270 0.89850 0.92456 1.33746 0.91412 1.25367 1.01127 0.96451 1.02542 1.69650 1.32665 1.05760 1.51069 0.85144 0.79595 0.77370 0.77608 1.21701 1.21636 1.20362 1.21163 0.88813 1.02251 1.01520 1.22182 1.03340 0.78802 1.01646 1.42981 1.08037 1.07128 1.44736 0.89362 0.87933 0.89904 0.77631 0.83995 0.74432 0.87836 0.93297 0.88905 0.94688 0.89343 0.94237 0.94105 0.79130 0.76803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.30 71.24 0.73 0.45 16 2 C -0.05 -0.69 7.02 41.20 0.29 -0.41 16 3 C 0.01 0.21 11.75 83.84 0.99 1.19 16 4 N -0.52 -13.90 11.31 -194.41 -2.20 -16.10 16 5 C 0.18 4.51 7.79 133.97 1.04 5.55 16 6 C -0.02 -0.65 9.70 22.91 0.22 -0.43 16 7 C -0.12 -2.62 5.90 -19.87 -0.12 -2.74 16 8 C 0.56 16.25 7.77 86.73 0.67 16.92 16 9 O -0.58 -22.97 16.10 -4.00 -0.06 -23.04 16 10 N -0.68 -17.18 3.62 -436.92 -1.58 -18.76 16 11 C 0.15 5.17 3.10 46.82 0.15 5.31 16 12 H 0.05 2.27 7.71 -2.39 -0.02 2.25 16 13 C -0.12 -4.18 6.25 32.43 0.20 -3.97 16 14 C 0.14 5.88 4.72 46.60 0.22 6.10 16 15 H 0.12 6.09 5.52 -2.39 -0.01 6.07 16 16 C -0.12 -4.26 6.50 32.58 0.21 -4.04 16 17 C -0.12 -3.89 6.34 32.21 0.20 -3.68 16 18 C 0.12 4.80 5.29 46.22 0.24 5.04 16 19 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 20 N -0.62 -30.96 2.97 -613.35 -1.82 -32.78 16 21 C -0.22 -12.69 10.59 84.03 0.89 -11.80 16 22 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 23 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 24 N -0.94 -54.01 10.46 21.65 0.23 -53.78 16 25 Si 0.97 46.25 29.55 68.60 2.03 48.27 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 C -0.12 -1.46 9.48 22.30 0.21 -1.24 16 30 C 0.06 0.63 10.80 83.08 0.90 1.53 16 31 N -0.36 -6.19 2.94 -339.15 -1.00 -7.19 16 32 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.08 0.11 8.12 -2.39 -0.02 0.09 16 35 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 4.22 7.67 -2.91 -0.02 4.20 16 37 H 0.42 6.68 6.12 -92.71 -0.57 6.11 16 38 H 0.10 2.50 7.41 -2.39 -0.02 2.48 16 39 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.09 2.27 7.88 -2.39 -0.02 2.25 16 41 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 2.26 6.56 -2.39 -0.02 2.24 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 45 H 0.19 0.85 6.46 -2.91 -0.02 0.83 16 46 H 0.22 0.12 8.04 -2.91 -0.02 0.10 16 Total: -1.00 -80.80 371.62 3.57 -77.24 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.45 Total: 15.37 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.52 Total: 10.77 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -6.37 Total: -128.61 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -80.80 3.57 -77.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095413905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.570 kcal (2) G-P(sol) polarization free energy of solvation -80.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds