Wall clock time and date at job start Tue Mar 31 2020 23:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40158 * 120.29666 * 2 1 4 4 C 1.35193 * 120.31671 * 179.72420 * 3 2 1 5 5 N 1.36236 * 120.70530 * 0.59003 * 4 3 2 6 6 N 1.40016 * 132.00896 * 179.66841 * 5 4 3 7 7 C 1.30747 * 109.60200 * 180.02562 * 6 5 4 8 8 C 1.40547 * 108.74393 * 359.97438 * 7 6 5 9 9 C 1.46566 * 126.57723 * 179.97438 * 8 7 6 10 10 O 1.21721 * 119.99891 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00268 * 0.02839 * 9 8 7 12 12 C 1.46503 * 120.00483 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.55110 * 36.99878 * 12 11 9 14 14 C 1.54850 * 110.62565 * 160.07031 * 12 11 9 15 15 C 1.55842 * 103.44055 * 118.49362 * 14 12 11 16 16 H 1.09003 * 115.55855 * 158.81329 * 15 14 12 17 17 C 1.55843 * 105.74224 * 287.98618 * 15 14 12 18 18 C 1.57704 * 103.12407 * 70.91182 * 17 15 14 19 19 C 1.55839 * 110.62443 * 274.10060 * 12 11 9 20 20 H 1.08997 * 115.56166 * 82.69672 * 19 12 11 21 21 N 1.50237 * 101.04859 * 208.56878 * 19 12 11 22 22 C 1.36938 * 130.84037 * 233.99337 * 21 19 12 23 23 H 1.07996 * 119.99909 * 10.17507 * 22 21 19 24 24 C 1.38813 * 119.99705 * 190.18282 * 22 21 19 25 25 N 1.31620 * 120.00638 * 9.08325 * 24 22 21 26 26 Si 1.86800 * 119.99665 * 189.08475 * 24 22 21 27 27 H 1.48504 * 109.47244 * 84.98852 * 26 24 22 28 28 H 1.48503 * 109.47272 * 204.98527 * 26 24 22 29 29 H 1.48500 * 109.47544 * 324.98660 * 26 24 22 30 30 C 1.36575 * 120.08362 * 359.66681 * 5 4 3 31 31 C 1.36452 * 120.29585 * 180.27387 * 2 1 3 32 32 H 1.09003 * 109.47205 * 269.71972 * 1 2 3 33 33 H 1.08999 * 109.47000 * 149.72302 * 1 2 3 34 34 H 1.08997 * 109.47247 * 29.72632 * 1 2 3 35 35 H 1.07996 * 119.83956 * 0.02562 * 3 2 1 36 36 H 1.08003 * 119.64247 * 180.23395 * 4 3 2 37 37 H 1.08006 * 125.62188 * 179.97438 * 7 6 5 38 38 H 0.97005 * 119.99377 * 359.97438 * 11 9 8 39 39 H 1.09004 * 110.62567 * 236.98101 * 14 12 11 40 40 H 1.08993 * 110.62944 * 359.97438 * 14 12 11 41 41 H 1.09000 * 110.62948 * 190.50627 * 17 15 14 42 42 H 1.09000 * 110.62707 * 313.52654 * 17 15 14 43 43 H 1.09007 * 111.91335 * 242.54008 * 18 17 15 44 44 H 1.08999 * 110.07035 * 119.02196 * 18 17 15 45 45 H 0.96996 * 120.00195 * 179.97438 * 25 24 22 46 46 H 1.08000 * 120.37257 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2106 0.0056 5 7 4.2620 0.0396 -0.0007 6 7 5.6352 -0.2344 -0.0032 7 6 5.8243 -1.5280 -0.0102 8 6 4.5728 -2.1675 -0.0122 9 6 4.3305 -3.6130 -0.0200 10 8 3.1903 -4.0390 -0.0214 11 7 5.3703 -4.4706 -0.0258 12 6 5.1282 -5.9154 -0.0331 13 1 4.2603 -6.1549 -0.6476 14 6 6.3812 -6.6759 -0.5326 15 6 6.7758 -7.5638 0.6860 16 1 7.3947 -8.4308 0.4552 17 6 7.3583 -6.5860 1.7505 18 6 6.0864 -5.7953 2.2445 19 6 4.9364 -6.4472 1.4191 20 1 3.9352 -6.3309 1.8342 21 7 5.4260 -7.8603 1.2754 22 6 4.8264 -9.0517 1.5855 23 1 3.7803 -9.0764 1.8525 24 6 5.5634 -10.2277 1.5567 25 7 6.8704 -10.1820 1.4083 26 14 4.7000 -11.8753 1.7285 27 1 4.2087 -12.3178 0.3988 28 1 5.6535 -12.8804 2.2633 29 1 3.5516 -11.7378 2.6599 30 6 3.5960 -1.1528 -0.0060 31 6 2.1953 -1.1782 -0.0056 32 1 -0.3634 -0.0050 1.0277 33 1 -0.3633 -0.8875 -0.5181 34 1 -0.3633 0.8924 -0.5096 35 1 1.6763 2.1467 0.0004 36 1 4.0998 2.1495 0.0094 37 1 6.7841 -2.0234 -0.0140 38 1 6.2790 -4.1310 -0.0251 39 1 6.1360 -7.2951 -1.3955 40 1 7.1826 -5.9781 -0.7753 41 1 7.8300 -7.1392 2.5627 42 1 8.0671 -5.8967 1.2917 43 1 6.1595 -4.7298 2.0260 44 1 5.9345 -5.9599 3.3112 45 1 7.3853 -11.0038 1.3885 46 1 1.6663 -2.1197 -0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095570361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:44 Heat of formation + Delta-G solvation = 116.833304 kcal Electronic energy + Delta-G solvation = -29374.156070 eV Core-core repulsion = 25460.028660 eV Total energy + Delta-G solvation = -3914.127410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36053 -39.74656 -38.19312 -37.65333 -33.88370 -33.73040 -32.22539 -31.58458 -29.91579 -29.06189 -28.92281 -27.86267 -26.93134 -24.30542 -23.89393 -22.73811 -22.20718 -21.22469 -20.18545 -19.42322 -18.51974 -18.03277 -17.01565 -16.90193 -16.29553 -16.02357 -15.62515 -15.10327 -14.94831 -14.81778 -14.62040 -14.06126 -13.86222 -13.64285 -13.61710 -13.53796 -12.95014 -12.33256 -12.25314 -12.19576 -12.11481 -11.76781 -11.64842 -11.43540 -11.06962 -10.98172 -10.86503 -10.82482 -10.73705 -10.53468 -10.13549 -10.02951 -9.82355 -9.61542 -9.56712 -9.38106 -9.19128 -8.80313 -8.43818 -7.81693 -6.82864 -5.71833 -3.06254 0.37043 0.73563 1.89531 2.07276 2.93042 3.42826 3.47951 3.49065 3.57529 3.73876 3.99326 4.20007 4.27739 4.50956 4.52192 4.77643 4.87776 5.06055 5.11176 5.21066 5.27926 5.34908 5.35981 5.41405 5.53744 5.61739 5.72881 5.87328 5.91920 5.96598 6.01070 6.10578 6.14584 6.19239 6.23259 6.36531 6.39695 6.53411 6.61794 6.65999 6.76916 6.88344 7.04818 7.09616 7.21559 7.35157 7.58908 7.77558 7.98894 8.16844 8.67871 9.12590 9.76476 10.60256 11.40798 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002627 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.921827 B =10654.591665 C =11599.941427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.157 4.157 4 C 0.110 3.890 5 N -0.271 5.271 6 N -0.322 5.322 7 C 0.118 3.882 8 C -0.305 4.305 9 C 0.594 3.406 10 O -0.554 6.554 11 N -0.709 5.709 12 C 0.133 3.867 13 H 0.082 0.918 14 C -0.143 4.143 15 C 0.160 3.840 16 H 0.139 0.861 17 C -0.128 4.128 18 C -0.133 4.133 19 C 0.128 3.872 20 H 0.084 0.916 21 N -0.589 5.589 22 C -0.211 4.211 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.913 3.087 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.164 3.836 31 C -0.107 4.107 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.198 0.802 38 H 0.392 0.608 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.253 0.747 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 24.503 -4.250 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.179 4.179 4 C -0.016 4.016 5 N -0.035 5.035 6 N -0.143 5.143 7 C -0.062 4.062 8 C -0.320 4.320 9 C 0.381 3.619 10 O -0.433 6.433 11 N -0.359 5.359 12 C 0.027 3.973 13 H 0.100 0.900 14 C -0.183 4.183 15 C 0.053 3.947 16 H 0.156 0.844 17 C -0.168 4.168 18 C -0.173 4.173 19 C 0.019 3.981 20 H 0.102 0.898 21 N -0.310 5.310 22 C -0.340 4.340 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.567 5.567 26 Si 0.744 3.256 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.208 1.208 30 C 0.044 3.956 31 C -0.126 4.126 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.174 0.826 36 H 0.188 0.812 37 H 0.215 0.785 38 H 0.226 0.774 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.583 24.934 -4.192 25.893 hybrid contribution -0.158 -1.302 0.182 1.324 sum -5.741 23.632 -4.010 24.648 Atomic orbital electron populations 1.20841 0.89459 1.03695 1.03251 1.20060 0.97409 0.92132 0.95723 1.20824 0.91841 0.99628 1.05609 1.21518 0.92022 0.88346 0.99706 1.46053 1.06394 1.05311 1.45747 1.77563 0.88079 1.17064 1.31610 1.24084 0.98814 0.90423 0.92911 1.19864 0.91231 0.93889 1.27007 1.16823 0.85078 0.83874 0.76085 1.90755 1.21843 1.79001 1.51725 1.45954 1.08179 1.07030 1.74730 1.22574 0.98731 0.76624 0.99352 0.89976 1.23297 0.95606 0.98688 1.00706 1.23360 0.88369 0.94761 0.88232 0.84367 1.23441 0.95563 0.97462 1.00317 1.23395 0.97301 0.97336 0.99275 1.23162 0.95963 0.86153 0.92791 0.89809 1.46441 1.14671 0.99023 1.70827 1.19021 0.93185 0.82549 1.39197 0.90479 1.24740 0.95412 0.97733 1.02763 1.69670 1.04175 1.26211 1.56606 0.86112 0.78256 0.83557 0.77714 1.21618 1.21793 1.20779 1.19300 0.93010 0.85632 0.97687 1.20794 0.90033 1.00300 1.01481 0.90155 0.90488 0.90846 0.82597 0.81158 0.78534 0.77379 0.91708 0.92562 0.92182 0.94008 0.92798 0.93273 0.93679 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.03 36.00 0.36 -0.27 16 2 C -0.05 -0.39 5.89 -104.55 -0.62 -1.01 16 3 C -0.16 -1.01 9.67 -39.95 -0.39 -1.40 16 4 C 0.11 0.88 11.17 -16.68 -0.19 0.69 16 5 N -0.27 -3.20 3.86 -10.55 -0.04 -3.24 16 6 N -0.32 -4.06 12.57 30.75 0.39 -3.67 16 7 C 0.12 1.40 11.44 -17.14 -0.20 1.20 16 8 C -0.31 -4.33 6.17 -104.68 -0.65 -4.97 16 9 C 0.59 9.80 7.78 -12.90 -0.10 9.70 16 10 O -0.55 -10.93 15.43 5.17 0.08 -10.85 16 11 N -0.71 -10.88 3.59 -52.73 -0.19 -11.07 16 12 C 0.13 2.50 3.08 -65.44 -0.20 2.30 16 13 H 0.08 1.72 7.70 -51.93 -0.40 1.32 16 14 C -0.14 -2.67 6.22 -24.24 -0.15 -2.82 16 15 C 0.16 3.59 4.57 -62.80 -0.29 3.30 16 16 H 0.14 3.55 5.91 -51.93 -0.31 3.24 16 17 C -0.13 -2.55 6.58 -22.64 -0.15 -2.69 16 18 C -0.13 -2.56 6.48 -22.64 -0.15 -2.71 16 19 C 0.13 2.75 5.30 -62.81 -0.33 2.42 16 20 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 21 N -0.59 -14.82 2.98 -145.83 -0.43 -15.25 16 22 C -0.21 -5.90 10.55 -15.06 -0.16 -6.06 16 23 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 24 C -0.01 -0.29 5.46 -17.43 -0.10 -0.39 16 25 N -0.92 -26.33 10.76 55.49 0.60 -25.74 16 26 Si 0.91 22.19 29.56 -169.99 -5.03 17.16 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 C 0.16 2.20 6.76 -84.07 -0.57 1.63 16 31 C -0.11 -1.24 9.38 -39.53 -0.37 -1.61 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 35 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 37 H 0.20 1.62 7.46 -52.48 -0.39 1.23 16 38 H 0.39 4.89 6.95 -40.82 -0.28 4.61 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.06 0.87 7.38 -51.93 -0.38 0.49 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.04 0.69 7.85 -51.93 -0.41 0.28 16 43 H 0.05 0.89 6.47 -51.92 -0.34 0.56 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.16 2.04 7.12 -52.49 -0.37 1.67 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -34.12 372.61 -9.47 -43.59 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.23 Total: 6.14 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -4.23 Total: -2.68 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.32 Total: -58.97 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.12 -9.47 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095570361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.421 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds