Wall clock time and date at job start Tue Mar 31 2020 23:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40158 * 120.29666 * 2 1 4 4 C 1.35193 * 120.31671 * 179.72420 * 3 2 1 5 5 N 1.36236 * 120.70530 * 0.59003 * 4 3 2 6 6 N 1.40016 * 132.00896 * 179.66841 * 5 4 3 7 7 C 1.30747 * 109.60200 * 180.02562 * 6 5 4 8 8 C 1.40547 * 108.74393 * 359.97438 * 7 6 5 9 9 C 1.46566 * 126.57723 * 179.97438 * 8 7 6 10 10 O 1.21721 * 119.99891 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00268 * 0.02839 * 9 8 7 12 12 C 1.46503 * 120.00483 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.55110 * 36.99878 * 12 11 9 14 14 C 1.54850 * 110.62565 * 160.07031 * 12 11 9 15 15 C 1.55842 * 103.44055 * 118.49362 * 14 12 11 16 16 H 1.09003 * 115.55855 * 158.81329 * 15 14 12 17 17 C 1.55843 * 105.74224 * 287.98618 * 15 14 12 18 18 C 1.57704 * 103.12407 * 70.91182 * 17 15 14 19 19 C 1.55839 * 110.62443 * 274.10060 * 12 11 9 20 20 H 1.08997 * 115.56166 * 82.69672 * 19 12 11 21 21 N 1.50237 * 101.04859 * 208.56878 * 19 12 11 22 22 C 1.36938 * 130.84037 * 233.99337 * 21 19 12 23 23 H 1.07996 * 119.99909 * 10.17507 * 22 21 19 24 24 C 1.38813 * 119.99705 * 190.18282 * 22 21 19 25 25 N 1.31620 * 120.00638 * 9.08325 * 24 22 21 26 26 Si 1.86800 * 119.99665 * 189.08475 * 24 22 21 27 27 H 1.48504 * 109.47244 * 84.98852 * 26 24 22 28 28 H 1.48503 * 109.47272 * 204.98527 * 26 24 22 29 29 H 1.48500 * 109.47544 * 324.98660 * 26 24 22 30 30 C 1.36575 * 120.08362 * 359.66681 * 5 4 3 31 31 C 1.36452 * 120.29585 * 180.27387 * 2 1 3 32 32 H 1.09003 * 109.47205 * 269.71972 * 1 2 3 33 33 H 1.08999 * 109.47000 * 149.72302 * 1 2 3 34 34 H 1.08997 * 109.47247 * 29.72632 * 1 2 3 35 35 H 1.07996 * 119.83956 * 0.02562 * 3 2 1 36 36 H 1.08003 * 119.64247 * 180.23395 * 4 3 2 37 37 H 1.08006 * 125.62188 * 179.97438 * 7 6 5 38 38 H 0.97005 * 119.99377 * 359.97438 * 11 9 8 39 39 H 1.09004 * 110.62567 * 236.98101 * 14 12 11 40 40 H 1.08993 * 110.62944 * 359.97438 * 14 12 11 41 41 H 1.09000 * 110.62948 * 190.50627 * 17 15 14 42 42 H 1.09000 * 110.62707 * 313.52654 * 17 15 14 43 43 H 1.09007 * 111.91335 * 242.54008 * 18 17 15 44 44 H 1.08999 * 110.07035 * 119.02196 * 18 17 15 45 45 H 0.96996 * 120.00195 * 179.97438 * 25 24 22 46 46 H 1.08000 * 120.37257 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2106 0.0056 5 7 4.2620 0.0396 -0.0007 6 7 5.6352 -0.2344 -0.0032 7 6 5.8243 -1.5280 -0.0102 8 6 4.5728 -2.1675 -0.0122 9 6 4.3305 -3.6130 -0.0200 10 8 3.1903 -4.0390 -0.0214 11 7 5.3703 -4.4706 -0.0258 12 6 5.1282 -5.9154 -0.0331 13 1 4.2603 -6.1549 -0.6476 14 6 6.3812 -6.6759 -0.5326 15 6 6.7758 -7.5638 0.6860 16 1 7.3947 -8.4308 0.4552 17 6 7.3583 -6.5860 1.7505 18 6 6.0864 -5.7953 2.2445 19 6 4.9364 -6.4472 1.4191 20 1 3.9352 -6.3309 1.8342 21 7 5.4260 -7.8603 1.2754 22 6 4.8264 -9.0517 1.5855 23 1 3.7803 -9.0764 1.8525 24 6 5.5634 -10.2277 1.5567 25 7 6.8704 -10.1820 1.4083 26 14 4.7000 -11.8753 1.7285 27 1 4.2087 -12.3178 0.3988 28 1 5.6535 -12.8804 2.2633 29 1 3.5516 -11.7378 2.6599 30 6 3.5960 -1.1528 -0.0060 31 6 2.1953 -1.1782 -0.0056 32 1 -0.3634 -0.0050 1.0277 33 1 -0.3633 -0.8875 -0.5181 34 1 -0.3633 0.8924 -0.5096 35 1 1.6763 2.1467 0.0004 36 1 4.0998 2.1495 0.0094 37 1 6.7841 -2.0234 -0.0140 38 1 6.2790 -4.1310 -0.0251 39 1 6.1360 -7.2951 -1.3955 40 1 7.1826 -5.9781 -0.7753 41 1 7.8300 -7.1392 2.5627 42 1 8.0671 -5.8967 1.2917 43 1 6.1595 -4.7298 2.0260 44 1 5.9345 -5.9599 3.3112 45 1 7.3853 -11.0038 1.3885 46 1 1.6663 -2.1197 -0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095570361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:43 Heat of formation + Delta-G solvation = 95.828029 kcal Electronic energy + Delta-G solvation = -29375.066927 eV Core-core repulsion = 25460.028660 eV Total energy + Delta-G solvation = -3915.038267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.18691 -41.26232 -39.50183 -38.54968 -35.38592 -34.59041 -34.08981 -32.37411 -30.99505 -30.90438 -30.34360 -29.14604 -27.96432 -26.10682 -24.80621 -23.79966 -23.03778 -22.65200 -21.60504 -20.96972 -20.13420 -19.13439 -18.69422 -17.70245 -17.36177 -16.90945 -16.82975 -16.74925 -16.25565 -15.99079 -15.84700 -15.65245 -15.09047 -14.92631 -14.38652 -14.33974 -14.07078 -13.89917 -13.50717 -13.40321 -13.18515 -12.93460 -12.83606 -12.78848 -12.71670 -12.59119 -12.46899 -12.29446 -11.96677 -11.94260 -11.90330 -11.53254 -11.38461 -11.28820 -10.91575 -10.83929 -10.72695 -10.33252 -9.94546 -8.84140 -8.66451 -7.82918 -5.18282 -0.38939 -0.00984 1.11527 1.14136 1.46045 1.47999 1.55437 2.16198 2.31574 2.53045 2.60884 3.19082 3.32725 3.48266 3.56288 3.68790 3.84629 3.92628 4.06278 4.08560 4.13930 4.20302 4.33342 4.39664 4.46834 4.51062 4.59953 4.65817 4.73938 4.78087 4.82496 4.83273 4.93057 5.01244 5.07429 5.12069 5.16250 5.27586 5.30326 5.35570 5.36220 5.47144 5.49038 5.60378 5.77600 5.79134 5.88932 6.22700 6.37412 6.77380 7.04126 7.44545 7.68691 8.58100 9.27576 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.002627 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.921827 B =10654.591665 C =11599.941427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.022 4.022 3 C -0.145 4.145 4 C 0.104 3.896 5 N -0.275 5.275 6 N -0.340 5.340 7 C 0.131 3.869 8 C -0.346 4.346 9 C 0.594 3.406 10 O -0.598 6.598 11 N -0.696 5.696 12 C 0.153 3.847 13 H 0.054 0.946 14 C -0.127 4.127 15 C 0.147 3.853 16 H 0.106 0.894 17 C -0.118 4.118 18 C -0.119 4.119 19 C 0.118 3.882 20 H 0.060 0.940 21 N -0.617 5.617 22 C -0.228 4.228 23 H 0.067 0.933 24 C -0.060 4.060 25 N -0.940 5.940 26 Si 0.973 3.027 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.153 3.847 31 C -0.152 4.152 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.205 0.795 36 H 0.207 0.793 37 H 0.230 0.770 38 H 0.411 0.589 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.034 0.966 45 H 0.249 0.751 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 28.584 -4.726 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.166 4.166 4 C -0.022 4.022 5 N -0.039 5.039 6 N -0.161 5.161 7 C -0.050 4.050 8 C -0.361 4.361 9 C 0.385 3.615 10 O -0.480 6.480 11 N -0.347 5.347 12 C 0.046 3.954 13 H 0.072 0.928 14 C -0.166 4.166 15 C 0.041 3.959 16 H 0.124 0.876 17 C -0.157 4.157 18 C -0.158 4.158 19 C 0.010 3.990 20 H 0.079 0.921 21 N -0.339 5.339 22 C -0.357 4.357 23 H 0.085 0.915 24 C -0.253 4.253 25 N -0.588 5.588 26 Si 0.802 3.198 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.203 1.203 30 C 0.031 3.969 31 C -0.172 4.172 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.222 0.778 36 H 0.223 0.777 37 H 0.246 0.754 38 H 0.248 0.752 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.052 0.948 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.454 29.076 -4.673 29.950 hybrid contribution -0.388 -2.342 0.331 2.397 sum -5.842 26.734 -4.342 27.708 Atomic orbital electron populations 1.20979 0.87392 1.04852 1.04241 1.20525 0.98921 0.91687 0.91659 1.21412 0.91390 1.00543 1.03217 1.22420 0.92945 0.88429 0.98371 1.46308 1.06214 1.05827 1.45544 1.77493 0.88657 1.17317 1.32632 1.24524 0.99170 0.90088 0.91184 1.19633 0.92890 0.92424 1.31114 1.17188 0.84388 0.85035 0.74908 1.90730 1.23639 1.79901 1.53773 1.45642 1.09131 1.05201 1.74714 1.22018 0.97922 0.78703 0.96779 0.92756 1.23136 0.96473 0.98542 0.98461 1.23324 0.87114 0.94966 0.90534 0.87618 1.23325 0.96217 0.97350 0.98796 1.23301 0.95726 0.98887 0.97877 1.23272 0.95684 0.85080 0.94970 0.92148 1.46696 1.16060 0.99534 1.71599 1.19240 0.93147 0.84331 1.39018 0.91497 1.25442 0.96156 1.00514 1.03226 1.69857 1.05029 1.26449 1.57512 0.85173 0.77305 0.79744 0.77564 1.21411 1.21750 1.20250 1.19501 0.93634 0.86379 0.97343 1.20736 0.89880 1.00908 1.05693 0.88999 0.91293 0.87797 0.77787 0.77665 0.75390 0.75166 0.92823 0.88178 0.94786 0.89468 0.89417 0.94729 0.94151 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.03 71.23 0.71 -0.26 16 2 C -0.02 -0.31 5.89 -19.82 -0.12 -0.43 16 3 C -0.14 -1.23 9.67 22.03 0.21 -1.02 16 4 C 0.10 1.28 11.17 83.31 0.93 2.21 16 5 N -0.28 -5.98 3.86 -187.28 -0.72 -6.70 16 6 N -0.34 -7.86 12.57 -56.62 -0.71 -8.57 16 7 C 0.13 2.85 11.44 85.42 0.98 3.83 16 8 C -0.35 -9.73 6.17 -19.90 -0.12 -9.85 16 9 C 0.59 19.98 7.78 86.41 0.67 20.65 16 10 O -0.60 -25.04 15.43 -4.42 -0.07 -25.11 16 11 N -0.70 -20.73 3.59 -438.95 -1.57 -22.30 16 12 C 0.15 5.82 3.08 46.60 0.14 5.96 16 13 H 0.05 2.38 7.70 -2.39 -0.02 2.37 16 14 C -0.13 -4.63 6.22 32.21 0.20 -4.43 16 15 C 0.15 6.68 4.57 46.23 0.21 6.89 16 16 H 0.11 5.59 5.91 -2.39 -0.01 5.58 16 17 C -0.12 -4.54 6.58 33.24 0.22 -4.32 16 18 C -0.12 -4.48 6.48 33.24 0.22 -4.26 16 19 C 0.12 5.23 5.30 46.23 0.25 5.47 16 20 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 21 N -0.62 -32.24 2.98 -615.28 -1.83 -34.07 16 22 C -0.23 -13.30 10.55 84.03 0.89 -12.41 16 23 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 24 C -0.06 -3.45 5.46 84.86 0.46 -2.98 16 25 N -0.94 -55.60 10.76 21.65 0.23 -55.36 16 26 Si 0.97 47.00 29.56 68.60 2.03 49.02 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 30 C 0.15 4.05 6.76 39.49 0.27 4.32 16 31 C -0.15 -3.60 9.38 22.30 0.21 -3.39 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 34 H 0.10 0.27 8.10 -2.39 -0.02 0.25 16 35 H 0.21 -0.21 8.06 -2.91 -0.02 -0.24 16 36 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.23 3.00 7.46 -2.91 -0.02 2.98 16 38 H 0.41 9.05 6.95 -92.70 -0.64 8.41 16 39 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.10 2.77 7.38 -2.39 -0.02 2.75 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 2.57 7.85 -2.39 -0.02 2.55 16 43 H 0.09 2.71 6.47 -2.38 -0.02 2.69 16 44 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 46 H 0.14 3.83 7.12 -2.91 -0.02 3.81 16 Total: -1.00 -81.08 372.61 4.06 -77.03 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.37 Total: 20.11 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.33 Total: 5.96 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -4.61 Total: -127.01 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.07 Total: -25.11 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Total: -81.08 4.06 -77.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095570361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.853 kcal (2) G-P(sol) polarization free energy of solvation -81.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds