Wall clock time and date at job start Tue Mar 31 2020 23:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.40570 * 120.13136 * 2 1 4 4 C 1.34845 * 120.34045 * 180.02562 * 3 2 1 5 5 N 1.36672 * 120.64125 * 359.97438 * 4 3 2 6 6 C 1.36199 * 132.29724 * 179.97438 * 5 4 3 7 7 C 1.36568 * 107.09865 * 180.02562 * 6 5 4 8 8 C 1.47593 * 125.92179 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99709 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99872 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99521 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.68534 * 38.32686 * 11 10 8 13 13 C 1.55488 * 110.60614 * 161.46909 * 11 10 8 14 14 C 1.55849 * 103.32313 * 118.41344 * 13 11 10 15 15 H 1.09002 * 116.12414 * 159.23753 * 14 13 11 16 16 C 1.55388 * 105.04611 * 288.04066 * 14 13 11 17 17 C 1.54843 * 103.48608 * 72.07612 * 16 14 13 18 18 C 1.55846 * 110.62615 * 275.33768 * 11 10 8 19 19 H 1.08999 * 116.12163 * 82.36251 * 18 11 10 20 20 N 1.50234 * 101.05224 * 33.02333 * 14 13 11 21 21 C 1.36934 * 130.83943 * 126.06439 * 20 14 13 22 22 H 1.07998 * 120.00419 * 171.75197 * 21 20 14 23 23 C 1.38814 * 119.99859 * 351.75560 * 21 20 14 24 24 N 1.31624 * 119.99924 * 157.95946 * 23 21 20 25 25 Si 1.86799 * 120.00142 * 338.22936 * 23 21 20 26 26 H 1.48504 * 109.47217 * 94.21663 * 25 23 21 27 27 H 1.48498 * 109.47558 * 214.21791 * 25 23 21 28 28 H 1.48507 * 109.47214 * 334.21893 * 25 23 21 29 29 N 1.34584 * 108.16285 * 0.22751 * 7 6 5 30 30 C 1.32241 * 109.02178 * 359.62689 * 29 7 6 31 31 C 1.35889 * 120.13562 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47020 * 90.00295 * 1 2 3 33 33 H 1.09001 * 109.46585 * 210.00117 * 1 2 3 34 34 H 1.08991 * 109.47162 * 329.99769 * 1 2 3 35 35 H 1.08007 * 119.83086 * 359.97438 * 3 2 1 36 36 H 1.08008 * 119.67914 * 179.97438 * 4 3 2 37 37 H 1.08001 * 126.45089 * 0.02788 * 6 5 4 38 38 H 0.96998 * 120.00607 * 0.02562 * 10 8 7 39 39 H 1.08995 * 110.61044 * 0.02562 * 13 11 10 40 40 H 1.08991 * 110.89406 * 236.96394 * 13 11 10 41 41 H 1.09007 * 110.71234 * 313.52136 * 16 14 13 42 42 H 1.08995 * 110.49652 * 190.53101 * 16 14 13 43 43 H 1.08998 * 110.62902 * 241.37972 * 17 16 14 44 44 H 1.09005 * 110.76189 * 118.42955 * 17 16 14 45 45 H 0.97001 * 119.99611 * 180.02562 * 24 23 21 46 46 H 1.08003 * 120.32882 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2127 1.2158 0.0000 4 6 3.5612 1.2207 -0.0005 5 7 4.2620 0.0473 -0.0005 6 6 5.5969 -0.2230 -0.0014 7 6 5.7314 -1.5820 -0.0015 8 6 7.0061 -2.3260 -0.0029 9 8 8.0619 -1.7230 -0.0046 10 7 6.9997 -3.6737 -0.0023 11 6 8.2651 -4.4122 -0.0031 12 1 9.0014 -3.9151 0.6284 13 6 8.0426 -5.8796 0.4603 14 6 8.4811 -6.7178 -0.7783 15 1 8.7452 -7.7575 -0.5851 16 6 7.3591 -6.4994 -1.8309 17 6 7.5795 -5.0390 -2.2959 18 6 8.8063 -4.5723 -1.4558 19 1 9.3568 -3.7225 -1.8592 20 7 9.5780 -5.8557 -1.3357 21 6 10.8790 -6.1505 -1.6448 22 1 11.4882 -5.4258 -2.1646 23 6 11.4150 -7.3809 -1.2901 24 7 12.4668 -7.8491 -1.9281 25 14 10.6391 -8.3755 0.0876 26 1 9.6695 -9.3431 -0.4858 27 1 11.6979 -9.1127 0.8230 28 1 9.9330 -7.4614 1.0211 29 7 4.5002 -2.1254 -0.0057 30 6 3.6010 -1.1557 -0.0002 31 6 2.1893 -1.1752 0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3632 -0.8900 0.5139 34 1 -0.3633 0.8899 0.5138 35 1 1.6721 2.1508 -0.0004 36 1 4.0925 2.1610 -0.0009 37 1 6.3982 0.5011 -0.0020 38 1 6.1575 -4.1548 -0.0013 39 1 6.9914 -6.0545 0.6891 40 1 8.6666 -6.1137 1.3227 41 1 6.3754 -6.6129 -1.3750 42 1 7.4788 -7.1904 -2.6653 43 1 6.7052 -4.4282 -2.0709 44 1 7.8076 -5.0030 -3.3612 45 1 12.8411 -8.7091 -1.6804 46 1 1.6569 -2.1149 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095705266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:42 Heat of formation + Delta-G solvation = 116.054774 kcal Electronic energy + Delta-G solvation = -29169.123642 eV Core-core repulsion = 25254.962473 eV Total energy + Delta-G solvation = -3914.161170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.14996 -40.14807 -38.69046 -37.71951 -34.65108 -33.93622 -32.32490 -31.15496 -30.38104 -29.70443 -29.31298 -28.30423 -27.26783 -24.65178 -23.78142 -22.99742 -22.10155 -21.47379 -20.40746 -19.89285 -18.78742 -18.43029 -17.41287 -16.94061 -16.60037 -16.36480 -15.83492 -15.40567 -15.32767 -14.98756 -14.90293 -14.35383 -14.14227 -13.85398 -13.73986 -13.35840 -13.05197 -12.93713 -12.61914 -12.56473 -12.12010 -12.09944 -11.98583 -11.79384 -11.21241 -11.08634 -11.06250 -11.05229 -10.80991 -10.60870 -10.39612 -10.25043 -9.89958 -9.66631 -9.50925 -9.22119 -9.20459 -8.84069 -8.57158 -8.19292 -7.17065 -5.86244 -3.11167 0.25524 0.83996 1.91931 2.13774 2.99125 3.34030 3.34856 3.49545 3.52973 3.57092 3.71713 4.04085 4.27510 4.31761 4.59116 4.60346 4.73596 4.78991 4.99508 5.06972 5.08595 5.13390 5.24763 5.26313 5.28648 5.43967 5.45997 5.59413 5.69490 5.73080 5.82651 5.83774 5.92812 6.02152 6.03543 6.07767 6.13855 6.32740 6.37611 6.49042 6.53729 6.60915 6.70512 6.79010 6.95195 6.99634 7.35005 7.44236 7.83149 8.37163 8.42973 8.78690 9.70954 10.30199 11.30290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.002449 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.125678 B =11428.296087 C =11855.600090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.137 4.137 4 C 0.060 3.940 5 N -0.367 5.367 6 C -0.021 4.021 7 C 0.014 3.986 8 C 0.595 3.405 9 O -0.536 6.536 10 N -0.695 5.695 11 C 0.128 3.872 12 H 0.090 0.910 13 C -0.141 4.141 14 C 0.123 3.877 15 H 0.092 0.908 16 C -0.130 4.130 17 C -0.130 4.130 18 C 0.139 3.861 19 H 0.097 0.903 20 N -0.603 5.603 21 C -0.222 4.222 22 H 0.098 0.902 23 C 0.014 3.986 24 N -0.913 5.913 25 Si 0.873 3.127 26 H -0.291 1.291 27 H -0.305 1.305 28 H -0.260 1.260 29 N -0.465 5.465 30 C 0.228 3.772 31 C -0.080 4.080 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.196 0.804 38 H 0.405 0.595 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.261 0.739 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.041 18.621 5.158 33.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.158 4.158 4 C -0.061 4.061 5 N -0.040 5.040 6 C -0.156 4.156 7 C -0.119 4.119 8 C 0.379 3.621 9 O -0.412 6.412 10 N -0.345 5.345 11 C 0.022 3.978 12 H 0.108 0.892 13 C -0.180 4.180 14 C 0.016 3.984 15 H 0.109 0.891 16 C -0.170 4.170 17 C -0.169 4.169 18 C 0.030 3.970 19 H 0.115 0.885 20 N -0.326 5.326 21 C -0.349 4.349 22 H 0.116 0.884 23 C -0.183 4.183 24 N -0.558 5.558 25 Si 0.705 3.295 26 H -0.219 1.219 27 H -0.234 1.234 28 H -0.185 1.185 29 N -0.187 5.187 30 C -0.017 4.017 31 C -0.100 4.100 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.213 0.787 38 H 0.241 0.759 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.972 18.025 5.090 32.021 hybrid contribution -0.496 -0.018 0.788 0.931 sum -26.468 18.007 5.879 32.548 Atomic orbital electron populations 1.20777 0.89546 1.03479 1.02996 1.19762 0.97115 0.91984 0.98864 1.20752 0.92081 0.99375 1.03559 1.21665 0.93043 0.88714 1.02655 1.42761 1.07209 1.07802 1.46196 1.22639 0.83429 0.98010 1.11506 1.20783 0.92695 0.91072 1.07347 1.16871 0.85892 0.82344 0.76972 1.90817 1.30904 1.68751 1.50740 1.46014 1.10351 1.05418 1.72699 1.22773 0.84019 0.91138 0.99862 0.89173 1.23451 1.00357 0.94466 0.99745 1.23036 0.88486 0.94996 0.91858 0.89071 1.22856 0.97459 0.97120 0.99540 1.22906 0.98294 0.95873 0.99872 1.23190 0.91139 0.90108 0.92559 0.88467 1.46834 1.06990 1.04385 1.74357 1.18669 0.84667 1.01114 1.30422 0.88434 1.24722 0.97040 0.96662 0.99924 1.69844 1.25885 1.19559 1.40542 0.87072 0.77331 0.80047 0.85023 1.21929 1.23368 1.18538 1.70844 0.97950 1.28822 1.21034 1.20923 0.94371 0.80212 1.06208 1.20153 0.87952 0.99749 1.02139 0.90470 0.90853 0.90976 0.83064 0.81615 0.78697 0.75937 0.91655 0.90563 0.92599 0.92049 0.92213 0.92284 0.92884 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.34 10.02 36.01 0.36 0.02 16 2 C -0.07 -0.41 5.88 -104.58 -0.62 -1.03 16 3 C -0.14 -0.66 9.67 -39.91 -0.39 -1.05 16 4 C 0.06 0.37 10.93 -16.60 -0.18 0.19 16 5 N -0.37 -3.67 2.93 -62.37 -0.18 -3.85 16 6 C -0.02 -0.24 11.47 -16.22 -0.19 -0.43 16 7 C 0.01 0.20 6.94 -83.45 -0.58 -0.38 16 8 C 0.60 9.80 7.81 -12.44 -0.10 9.71 16 9 O -0.54 -10.29 16.63 5.29 0.09 -10.21 16 10 N -0.69 -10.99 3.62 -52.08 -0.19 -11.18 16 11 C 0.13 2.37 3.08 -65.09 -0.20 2.17 16 12 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 13 C -0.14 -2.58 5.99 -23.89 -0.14 -2.73 16 14 C 0.12 2.62 3.54 -63.05 -0.22 2.39 16 15 H 0.09 2.10 3.47 -51.93 -0.18 1.92 16 16 C -0.13 -2.38 6.42 -24.49 -0.16 -2.54 16 17 C -0.13 -2.36 6.32 -24.24 -0.15 -2.51 16 18 C 0.14 2.87 5.34 -62.80 -0.34 2.53 16 19 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 20 N -0.60 -14.72 2.85 -146.09 -0.42 -15.14 16 21 C -0.22 -6.41 10.94 -15.06 -0.16 -6.57 16 22 H 0.10 2.99 8.06 -52.49 -0.42 2.57 16 23 C 0.01 0.41 5.50 -17.43 -0.10 0.31 16 24 N -0.91 -28.77 13.97 55.49 0.78 -28.00 16 25 Si 0.87 22.36 24.62 -169.99 -4.18 18.17 16 26 H -0.29 -7.31 6.82 56.52 0.39 -6.92 16 27 H -0.31 -8.04 7.11 56.52 0.40 -7.64 16 28 H -0.26 -6.20 4.73 56.52 0.27 -5.93 16 29 N -0.46 -6.36 11.01 -9.35 -0.10 -6.46 16 30 C 0.23 2.60 7.79 -156.04 -1.22 1.38 16 31 C -0.08 -0.65 9.75 -39.31 -0.38 -1.03 16 32 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 34 H 0.07 0.13 8.09 -51.93 -0.42 -0.29 16 35 H 0.15 0.26 8.06 -52.48 -0.42 -0.17 16 36 H 0.17 0.50 8.06 -52.48 -0.42 0.07 16 37 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.40 5.78 7.75 -40.82 -0.32 5.47 16 39 H 0.06 1.00 7.32 -51.93 -0.38 0.62 16 40 H 0.08 1.48 6.59 -51.93 -0.34 1.14 16 41 H 0.06 0.85 7.80 -51.93 -0.41 0.45 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 0.97 6.51 -51.93 -0.34 0.63 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -35.47 366.21 -9.75 -45.21 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.30 Total: 5.48 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -4.76 Total: 0.45 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -0.12 Total: -64.63 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.18 Total: 18.17 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.47 -9.75 -45.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095705266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.266 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds