Wall clock time and date at job start Tue Mar 31 2020 23:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.40570 * 120.13136 * 2 1 4 4 C 1.34845 * 120.34045 * 180.02562 * 3 2 1 5 5 N 1.36672 * 120.64125 * 359.97438 * 4 3 2 6 6 C 1.36199 * 132.29724 * 179.97438 * 5 4 3 7 7 C 1.36568 * 107.09865 * 180.02562 * 6 5 4 8 8 C 1.47593 * 125.92179 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99709 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99872 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99521 * 180.02562 * 10 8 7 12 12 H 1.08995 * 110.68534 * 38.32686 * 11 10 8 13 13 C 1.55488 * 110.60614 * 161.46909 * 11 10 8 14 14 C 1.55849 * 103.32313 * 118.41344 * 13 11 10 15 15 H 1.09002 * 116.12414 * 159.23753 * 14 13 11 16 16 C 1.55388 * 105.04611 * 288.04066 * 14 13 11 17 17 C 1.54843 * 103.48608 * 72.07612 * 16 14 13 18 18 C 1.55846 * 110.62615 * 275.33768 * 11 10 8 19 19 H 1.08999 * 116.12163 * 82.36251 * 18 11 10 20 20 N 1.50234 * 101.05224 * 33.02333 * 14 13 11 21 21 C 1.36934 * 130.83943 * 126.06439 * 20 14 13 22 22 H 1.07998 * 120.00419 * 171.75197 * 21 20 14 23 23 C 1.38814 * 119.99859 * 351.75560 * 21 20 14 24 24 N 1.31624 * 119.99924 * 157.95946 * 23 21 20 25 25 Si 1.86799 * 120.00142 * 338.22936 * 23 21 20 26 26 H 1.48504 * 109.47217 * 94.21663 * 25 23 21 27 27 H 1.48498 * 109.47558 * 214.21791 * 25 23 21 28 28 H 1.48507 * 109.47214 * 334.21893 * 25 23 21 29 29 N 1.34584 * 108.16285 * 0.22751 * 7 6 5 30 30 C 1.32241 * 109.02178 * 359.62689 * 29 7 6 31 31 C 1.35889 * 120.13562 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47020 * 90.00295 * 1 2 3 33 33 H 1.09001 * 109.46585 * 210.00117 * 1 2 3 34 34 H 1.08991 * 109.47162 * 329.99769 * 1 2 3 35 35 H 1.08007 * 119.83086 * 359.97438 * 3 2 1 36 36 H 1.08008 * 119.67914 * 179.97438 * 4 3 2 37 37 H 1.08001 * 126.45089 * 0.02788 * 6 5 4 38 38 H 0.96998 * 120.00607 * 0.02562 * 10 8 7 39 39 H 1.08995 * 110.61044 * 0.02562 * 13 11 10 40 40 H 1.08991 * 110.89406 * 236.96394 * 13 11 10 41 41 H 1.09007 * 110.71234 * 313.52136 * 16 14 13 42 42 H 1.08995 * 110.49652 * 190.53101 * 16 14 13 43 43 H 1.08998 * 110.62902 * 241.37972 * 17 16 14 44 44 H 1.09005 * 110.76189 * 118.42955 * 17 16 14 45 45 H 0.97001 * 119.99611 * 180.02562 * 24 23 21 46 46 H 1.08003 * 120.32882 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2127 1.2158 0.0000 4 6 3.5612 1.2207 -0.0005 5 7 4.2620 0.0473 -0.0005 6 6 5.5969 -0.2230 -0.0014 7 6 5.7314 -1.5820 -0.0015 8 6 7.0061 -2.3260 -0.0029 9 8 8.0619 -1.7230 -0.0046 10 7 6.9997 -3.6737 -0.0023 11 6 8.2651 -4.4122 -0.0031 12 1 9.0014 -3.9151 0.6284 13 6 8.0426 -5.8796 0.4603 14 6 8.4811 -6.7178 -0.7783 15 1 8.7452 -7.7575 -0.5851 16 6 7.3591 -6.4994 -1.8309 17 6 7.5795 -5.0390 -2.2959 18 6 8.8063 -4.5723 -1.4558 19 1 9.3568 -3.7225 -1.8592 20 7 9.5780 -5.8557 -1.3357 21 6 10.8790 -6.1505 -1.6448 22 1 11.4882 -5.4258 -2.1646 23 6 11.4150 -7.3809 -1.2901 24 7 12.4668 -7.8491 -1.9281 25 14 10.6391 -8.3755 0.0876 26 1 9.6695 -9.3431 -0.4858 27 1 11.6979 -9.1127 0.8230 28 1 9.9330 -7.4614 1.0211 29 7 4.5002 -2.1254 -0.0057 30 6 3.6010 -1.1557 -0.0002 31 6 2.1893 -1.1752 0.0005 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3632 -0.8900 0.5139 34 1 -0.3633 0.8899 0.5138 35 1 1.6721 2.1508 -0.0004 36 1 4.0925 2.1610 -0.0009 37 1 6.3982 0.5011 -0.0020 38 1 6.1575 -4.1548 -0.0013 39 1 6.9914 -6.0545 0.6891 40 1 8.6666 -6.1137 1.3227 41 1 6.3754 -6.6129 -1.3750 42 1 7.4788 -7.1904 -2.6653 43 1 6.7052 -4.4282 -2.0709 44 1 7.8076 -5.0030 -3.3612 45 1 12.8411 -8.7091 -1.6804 46 1 1.6569 -2.1149 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095705266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:41 Heat of formation + Delta-G solvation = 92.995898 kcal Electronic energy + Delta-G solvation = -29170.123550 eV Core-core repulsion = 25254.962473 eV Total energy + Delta-G solvation = -3915.161078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.89022 -41.65230 -39.95355 -38.47776 -35.61218 -35.17613 -34.34887 -31.89241 -31.52944 -31.04990 -30.81212 -29.76725 -27.95532 -26.11908 -25.02697 -23.86009 -22.89835 -22.71872 -22.08086 -21.20257 -20.39817 -19.29771 -18.93750 -17.93672 -17.78856 -17.42943 -17.16897 -16.73132 -16.51088 -15.93231 -15.56416 -15.49857 -15.29036 -15.23570 -14.94853 -14.80251 -14.26894 -14.16369 -13.86127 -13.46949 -13.36293 -13.12122 -12.92917 -12.89453 -12.65828 -12.58232 -12.52266 -12.48736 -12.26299 -11.91640 -11.59516 -11.55106 -11.44145 -11.25378 -11.14174 -11.03728 -10.88551 -10.18361 -9.87014 -9.19853 -8.86165 -8.13309 -5.34930 -0.33111 0.18154 0.99860 1.27953 1.41109 1.44067 1.50430 2.13638 2.28857 2.44405 2.55141 2.92268 2.99973 3.20689 3.48047 3.66565 3.73123 3.80597 3.81518 3.96108 4.09674 4.15763 4.19266 4.26407 4.31325 4.40722 4.47326 4.51251 4.61205 4.68103 4.71146 4.82495 4.84125 4.90764 4.98979 5.03412 5.04543 5.17461 5.21286 5.27008 5.30810 5.32640 5.43786 5.53995 5.56756 5.59929 5.95581 6.11321 6.41689 6.60178 6.70267 7.17868 7.47669 8.20109 9.07036 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.002449 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.125678 B =11428.296087 C =11855.600090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.050 4.050 3 C -0.127 4.127 4 C 0.045 3.955 5 N -0.369 5.369 6 C -0.020 4.020 7 C -0.017 4.017 8 C 0.597 3.403 9 O -0.572 6.572 10 N -0.684 5.684 11 C 0.144 3.856 12 H 0.067 0.933 13 C -0.129 4.129 14 C 0.108 3.892 15 H 0.079 0.921 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.128 3.872 19 H 0.074 0.926 20 N -0.628 5.628 21 C -0.213 4.213 22 H 0.057 0.943 23 C -0.052 4.052 24 N -0.966 5.966 25 Si 0.942 3.058 26 H -0.279 1.279 27 H -0.317 1.317 28 H -0.233 1.233 29 N -0.496 5.496 30 C 0.220 3.780 31 C -0.113 4.113 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.192 0.808 36 H 0.199 0.801 37 H 0.210 0.790 38 H 0.416 0.584 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.049 0.951 45 H 0.260 0.740 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.521 20.440 6.599 38.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.056 4.056 3 C -0.147 4.147 4 C -0.074 4.074 5 N -0.040 5.040 6 C -0.156 4.156 7 C -0.149 4.149 8 C 0.383 3.617 9 O -0.452 6.452 10 N -0.335 5.335 11 C 0.037 3.963 12 H 0.086 0.914 13 C -0.169 4.169 14 C 0.003 3.997 15 H 0.097 0.903 16 C -0.160 4.160 17 C -0.157 4.157 18 C 0.020 3.980 19 H 0.092 0.908 20 N -0.351 5.351 21 C -0.341 4.341 22 H 0.075 0.925 23 C -0.245 4.245 24 N -0.614 5.614 25 Si 0.772 3.228 26 H -0.207 1.207 27 H -0.247 1.247 28 H -0.157 1.157 29 N -0.218 5.218 30 C -0.026 4.026 31 C -0.133 4.133 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.209 0.791 36 H 0.216 0.784 37 H 0.226 0.774 38 H 0.254 0.746 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -31.554 19.880 6.545 37.864 hybrid contribution 1.007 -0.297 0.251 1.079 sum -30.548 19.582 6.795 36.916 Atomic orbital electron populations 1.20894 0.87250 1.04731 1.03987 1.20241 0.98701 0.91506 0.95188 1.21329 0.91651 1.00642 1.01094 1.22434 0.93934 0.88611 1.02439 1.42891 1.06561 1.08724 1.45847 1.22784 0.84650 0.97425 1.10758 1.20413 0.92023 0.91936 1.10523 1.17208 0.86458 0.82318 0.75709 1.90791 1.32568 1.69431 1.52381 1.45774 1.09652 1.05322 1.72704 1.22292 0.84790 0.91754 0.97446 0.91448 1.23382 1.02773 0.92870 0.97833 1.23293 0.88145 0.94248 0.93977 0.90312 1.22841 0.98381 0.96309 0.98509 1.22803 0.97626 0.96464 0.98764 1.23322 0.91567 0.88363 0.94729 0.90759 1.46887 1.06226 1.06945 1.75089 1.18520 0.86575 1.00056 1.28962 0.92547 1.25459 0.98295 0.98276 1.02429 1.69992 1.28468 1.20398 1.42533 0.85993 0.76374 0.78708 0.81755 1.20676 1.24665 1.15687 1.70720 0.97897 1.30079 1.23067 1.21391 0.95343 0.80374 1.05498 1.20388 0.86702 1.01347 1.04823 0.89384 0.90459 0.88981 0.79054 0.78443 0.77378 0.74558 0.87351 0.91265 0.88212 0.92874 0.89751 0.93227 0.93171 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.18 10.02 71.24 0.71 0.54 16 2 C -0.05 -0.38 5.88 -19.84 -0.12 -0.50 16 3 C -0.13 -0.63 9.67 22.06 0.21 -0.42 16 4 C 0.05 0.40 10.93 83.16 0.91 1.31 16 5 N -0.37 -6.65 2.93 -351.25 -1.03 -7.68 16 6 C -0.02 -0.45 11.47 83.62 0.96 0.51 16 7 C -0.02 -0.48 6.94 40.80 0.28 -0.20 16 8 C 0.60 19.74 7.81 86.71 0.68 20.42 16 9 O -0.57 -22.70 16.63 -3.98 -0.07 -22.77 16 10 N -0.68 -20.90 3.62 -436.95 -1.58 -22.48 16 11 C 0.14 5.26 3.08 46.83 0.14 5.41 16 12 H 0.07 2.79 7.75 -2.39 -0.02 2.78 16 13 C -0.13 -4.42 5.99 32.44 0.19 -4.22 16 14 C 0.11 4.44 3.54 46.07 0.16 4.60 16 15 H 0.08 3.45 3.47 -2.39 -0.01 3.45 16 16 C -0.12 -4.11 6.42 32.04 0.21 -3.91 16 17 C -0.12 -4.12 6.32 32.21 0.20 -3.92 16 18 C 0.13 5.38 5.34 46.23 0.25 5.63 16 19 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 20 N -0.63 -31.22 2.85 -616.10 -1.76 -32.98 16 21 C -0.21 -12.89 10.94 84.03 0.92 -11.97 16 22 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 23 C -0.05 -3.18 5.50 84.86 0.47 -2.71 16 24 N -0.97 -63.80 13.97 21.65 0.30 -63.49 16 25 Si 0.94 47.26 24.62 68.60 1.69 48.95 16 26 H -0.28 -13.35 6.82 99.48 0.68 -12.67 16 27 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 28 H -0.23 -10.52 4.73 99.48 0.47 -10.05 16 29 N -0.50 -13.13 11.01 -183.49 -2.02 -15.15 16 30 C 0.22 4.68 7.79 134.20 1.05 5.73 16 31 C -0.11 -1.58 9.75 22.45 0.22 -1.36 16 32 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.08 0.12 8.08 -2.39 -0.02 0.10 16 34 H 0.09 -0.16 8.09 -2.39 -0.02 -0.18 16 35 H 0.19 -0.57 8.06 -2.91 -0.02 -0.59 16 36 H 0.20 0.35 8.06 -2.91 -0.02 0.33 16 37 H 0.21 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.42 10.89 7.75 -92.71 -0.72 10.17 16 39 H 0.11 2.80 7.32 -2.39 -0.02 2.78 16 40 H 0.07 2.50 6.59 -2.39 -0.02 2.48 16 41 H 0.10 2.55 7.80 -2.38 -0.02 2.53 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 2.56 6.51 -2.39 -0.02 2.55 16 44 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 45 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 46 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -83.77 366.21 3.03 -80.74 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.04 Total: 19.92 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 7.45 Total: 14.93 kcal Atomic # 7 Polarization: -135.70 SS G_CDS: -6.08 Total: -141.78 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.69 Total: 48.95 kcal Total: -83.77 3.03 -80.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095705266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.739 kcal (2) G-P(sol) polarization free energy of solvation -83.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds