Wall clock time and date at job start Tue Mar 31 2020 23:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40384 * 120.22557 * 2 1 4 4 C 1.35037 * 120.44768 * 179.64789 * 3 2 1 5 5 N 1.36534 * 120.59222 * 0.58857 * 4 3 2 6 6 C 1.36249 * 132.78452 * 179.29807 * 5 4 3 7 7 N 1.30180 * 109.81853 * 180.02562 * 6 5 4 8 8 C 1.34892 * 109.73657 * 359.97438 * 7 6 5 9 9 C 1.46285 * 126.49410 * 179.97438 * 8 7 6 10 10 O 1.21775 * 120.00000 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00256 * 0.03296 * 9 8 7 12 12 C 1.46505 * 120.00000 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.68344 * 32.00933 * 12 11 9 14 14 C 1.55483 * 110.75320 * 268.95354 * 12 11 9 15 15 C 1.55846 * 103.32268 * 241.51324 * 14 12 11 16 16 H 1.09004 * 116.12541 * 159.23122 * 15 14 12 17 17 C 1.55379 * 105.04806 * 288.04244 * 15 14 12 18 18 C 1.54847 * 103.48731 * 72.07685 * 17 15 14 19 19 C 1.55840 * 110.62631 * 154.99889 * 12 11 9 20 20 H 1.09001 * 116.12955 * 319.33407 * 19 12 11 21 21 N 1.50232 * 101.05441 * 85.54706 * 19 12 11 22 22 C 1.36942 * 130.84178 * 233.92880 * 21 19 12 23 23 H 1.07992 * 119.99655 * 10.12825 * 22 21 19 24 24 C 1.38813 * 120.00011 * 190.11965 * 22 21 19 25 25 N 1.31617 * 119.99985 * 9.08242 * 24 22 21 26 26 Si 1.86794 * 119.99708 * 189.07763 * 24 22 21 27 27 H 1.48503 * 109.47180 * 265.02099 * 26 24 22 28 28 H 1.48503 * 109.46897 * 145.02055 * 26 24 22 29 29 H 1.48501 * 109.47273 * 25.02200 * 26 24 22 30 30 C 1.37269 * 120.02900 * 359.57450 * 5 4 3 31 31 C 1.36334 * 120.21776 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47672 * 269.98197 * 1 2 3 33 33 H 1.09004 * 109.46842 * 29.97997 * 1 2 3 34 34 H 1.09001 * 109.47625 * 149.97911 * 1 2 3 35 35 H 1.08001 * 119.77680 * 359.97438 * 3 2 1 36 36 H 1.07995 * 119.69713 * 179.88800 * 4 3 2 37 37 H 1.07994 * 125.08797 * 359.97438 * 6 5 4 38 38 H 0.97002 * 120.00103 * 359.97438 * 11 9 8 39 39 H 1.08997 * 110.60842 * 123.10132 * 14 12 11 40 40 H 1.08993 * 110.89257 * 0.06148 * 14 12 11 41 41 H 1.09004 * 110.71412 * 313.52354 * 17 15 14 42 42 H 1.09000 * 110.50404 * 190.53185 * 17 15 14 43 43 H 1.09003 * 110.62764 * 241.38817 * 18 17 15 44 44 H 1.08997 * 110.62790 * 118.36683 * 18 17 15 45 45 H 0.96994 * 119.99817 * 180.02562 * 25 24 22 46 46 H 1.08000 * 120.40315 * 359.95960 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2130 0.0000 4 6 3.5640 1.2182 0.0072 5 7 4.2634 0.0457 0.0024 6 6 5.5963 -0.2368 -0.0048 7 7 5.7741 -1.5264 -0.0075 8 6 4.5786 -2.1511 -0.0016 9 6 4.3521 -3.5963 -0.0027 10 8 3.2160 -4.0346 0.0027 11 7 5.4008 -4.4429 -0.0095 12 6 5.1739 -5.8902 -0.0112 13 1 4.2574 -6.1356 -0.5477 14 6 5.1221 -6.4415 1.4417 15 6 6.3159 -7.4421 1.4890 16 1 6.6963 -7.6889 2.4803 17 6 5.8612 -8.6535 0.6287 18 6 5.9141 -8.1080 -0.8195 19 6 6.3917 -6.6361 -0.6351 20 1 6.8389 -6.1731 -1.5148 21 7 7.2898 -6.7725 0.5615 22 6 8.5959 -6.4053 0.7475 23 1 9.0933 -5.7890 0.0132 24 6 9.2804 -6.8250 1.8798 25 7 8.7398 -7.7167 2.6828 26 14 10.9688 -6.1242 2.2637 27 1 12.0150 -7.0315 1.7274 28 1 11.1295 -5.9981 3.7347 29 1 11.1042 -4.7860 1.6345 30 6 3.5947 -1.1531 -0.0009 31 6 2.1931 -1.1781 -0.0005 32 1 -0.3634 -0.0003 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3634 -0.8898 -0.5141 35 1 1.6737 2.1483 -0.0004 36 1 4.0954 2.1584 0.0052 37 1 6.3868 0.4989 -0.0087 38 1 6.3059 -4.0938 -0.0141 39 1 4.1799 -6.9589 1.6223 40 1 5.2638 -5.6401 2.1668 41 1 4.8460 -8.9523 0.8897 42 1 6.5514 -9.4884 0.7500 43 1 4.9250 -8.1363 -1.2768 44 1 6.6305 -8.6723 -1.4165 45 1 9.2179 -8.0097 3.4742 46 1 1.6633 -2.1192 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097383274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:14 Heat of formation + Delta-G solvation = 94.389992 kcal Electronic energy + Delta-G solvation = -29420.291210 eV Core-core repulsion = 25505.190584 eV Total energy + Delta-G solvation = -3915.100625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.94848 -39.55250 -38.28503 -37.78302 -34.18926 -33.60762 -32.40959 -31.36213 -29.96819 -29.03217 -28.75381 -27.90283 -26.68293 -24.22555 -23.92940 -23.04507 -22.18030 -20.98342 -19.73727 -19.64097 -18.64126 -18.10736 -16.89874 -16.80068 -16.37966 -16.15291 -15.78611 -15.28419 -14.74202 -14.64751 -14.42225 -14.19935 -13.87237 -13.82339 -13.68849 -13.26491 -12.83865 -12.70289 -12.33417 -11.98761 -11.87988 -11.83757 -11.72478 -11.14317 -11.04322 -10.88763 -10.78116 -10.55677 -10.53992 -10.40011 -10.24807 -10.01108 -9.86329 -9.73214 -9.56717 -9.28697 -9.05262 -8.75583 -8.36521 -7.59964 -6.82711 -5.69811 -3.04799 0.44412 0.89797 2.31584 2.40925 3.04468 3.42566 3.48584 3.50475 3.73190 3.87260 4.10856 4.32069 4.43486 4.46309 4.49641 4.64831 4.81835 5.13987 5.22492 5.26691 5.29416 5.34700 5.43940 5.48234 5.68726 5.74064 5.75644 5.79466 5.98148 6.09437 6.13938 6.16402 6.24059 6.29058 6.33150 6.40290 6.52987 6.57538 6.71810 6.85562 6.90529 6.91885 7.05189 7.23573 7.42098 7.57235 7.60186 7.85006 8.19165 8.23326 8.76903 9.13244 9.77964 10.61558 11.42419 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.003087 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.168086 B = 9067.535487 C =10440.820009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.088 4.088 3 C -0.131 4.131 4 C 0.052 3.948 5 N -0.369 5.369 6 C 0.142 3.858 7 N -0.412 5.412 8 C -0.054 4.054 9 C 0.600 3.400 10 O -0.560 6.560 11 N -0.689 5.689 12 C 0.131 3.869 13 H 0.081 0.919 14 C -0.145 4.145 15 C 0.159 3.841 16 H 0.140 0.860 17 C -0.133 4.133 18 C -0.128 4.128 19 C 0.124 3.876 20 H 0.088 0.912 21 N -0.588 5.588 22 C -0.213 4.213 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.916 5.916 26 Si 0.911 3.089 27 H -0.291 1.291 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.076 3.924 31 C -0.069 4.069 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.169 0.831 37 H 0.217 0.783 38 H 0.411 0.589 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.252 0.748 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 17.905 -6.023 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.069 4.069 5 N -0.041 5.041 6 C -0.134 4.134 7 N -0.126 5.126 8 C -0.189 4.189 9 C 0.386 3.614 10 O -0.439 6.439 11 N -0.337 5.337 12 C 0.025 3.975 13 H 0.099 0.901 14 C -0.185 4.185 15 C 0.053 3.947 16 H 0.157 0.843 17 C -0.173 4.173 18 C -0.168 4.168 19 C 0.015 3.985 20 H 0.106 0.894 21 N -0.309 5.309 22 C -0.341 4.341 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.564 5.564 26 Si 0.742 3.258 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.206 1.206 30 C -0.037 4.037 31 C -0.088 4.088 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.167 0.833 36 H 0.186 0.814 37 H 0.233 0.767 38 H 0.246 0.754 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.967 17.221 -5.853 22.933 hybrid contribution 0.794 1.111 0.259 1.390 sum -13.173 18.332 -5.593 23.257 Atomic orbital electron populations 1.20758 0.89779 1.03320 1.02854 1.19925 0.97152 0.92160 0.99925 1.20788 0.92306 0.99294 1.02783 1.21644 0.93043 0.88621 1.03597 1.43050 1.08613 1.06307 1.46125 1.25072 0.82332 0.94211 1.11830 1.70126 1.25703 1.04072 1.12723 1.20675 0.87381 0.93989 1.16808 1.16499 0.85106 0.83159 0.76663 1.90752 1.22362 1.77832 1.52989 1.45788 1.09290 1.06653 1.71947 1.22756 0.98963 0.78131 0.97688 0.90052 1.23571 0.99265 1.00284 0.95387 1.23315 0.85621 0.88585 0.97228 0.84327 1.22931 0.98746 1.00108 0.95481 1.22878 0.98975 0.97408 0.97547 1.23178 0.89912 0.93832 0.91547 0.89396 1.46524 1.07942 1.68733 1.07731 1.18983 0.85503 1.24417 1.05170 0.90512 1.24733 0.98299 0.98770 0.98738 1.69675 1.38053 1.32744 1.15893 0.86110 0.83824 0.78547 0.77358 1.21835 1.21772 1.20603 1.19267 0.93202 0.85149 1.06049 1.20670 0.89750 0.99953 0.98441 0.90632 0.91210 0.90813 0.83316 0.81417 0.76692 0.75354 0.92660 0.92369 0.93476 0.92351 0.93091 0.92473 0.93729 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.03 36.00 0.36 -0.32 16 2 C -0.09 -0.79 5.89 -104.50 -0.62 -1.40 16 3 C -0.13 -0.91 9.67 -39.91 -0.39 -1.29 16 4 C 0.05 0.39 10.95 -16.60 -0.18 0.21 16 5 N -0.37 -4.23 2.94 -62.19 -0.18 -4.42 16 6 C 0.14 1.70 12.73 -89.53 -1.14 0.56 16 7 N -0.41 -6.65 10.90 -10.54 -0.11 -6.77 16 8 C -0.05 -0.93 7.05 -82.57 -0.58 -1.51 16 9 C 0.60 11.59 7.77 -13.03 -0.10 11.49 16 10 O -0.56 -11.55 15.40 5.12 0.08 -11.47 16 11 N -0.69 -13.52 5.09 -52.48 -0.27 -13.79 16 12 C 0.13 2.61 2.82 -65.09 -0.18 2.43 16 13 H 0.08 1.60 7.23 -51.93 -0.38 1.22 16 14 C -0.14 -3.07 6.25 -23.89 -0.15 -3.22 16 15 C 0.16 3.75 4.61 -63.05 -0.29 3.46 16 16 H 0.14 3.72 5.87 -51.93 -0.31 3.42 16 17 C -0.13 -2.77 6.42 -24.49 -0.16 -2.93 16 18 C -0.13 -2.46 6.44 -24.24 -0.16 -2.61 16 19 C 0.12 2.56 5.06 -62.81 -0.32 2.25 16 20 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 21 N -0.59 -14.56 2.98 -146.09 -0.44 -15.00 16 22 C -0.21 -5.80 10.55 -15.06 -0.16 -5.95 16 23 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 24 C -0.01 -0.26 5.47 -17.43 -0.10 -0.35 16 25 N -0.92 -26.49 10.74 55.49 0.60 -25.90 16 26 Si 0.91 22.13 29.56 -169.99 -5.03 17.11 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 C 0.08 1.10 6.72 -83.99 -0.56 0.53 16 31 C -0.07 -0.85 9.38 -39.54 -0.37 -1.22 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 34 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.22 1.58 8.06 -52.49 -0.42 1.15 16 38 H 0.41 8.31 8.36 -40.82 -0.34 7.97 16 39 H 0.05 1.08 7.80 -51.93 -0.41 0.68 16 40 H 0.06 1.33 8.00 -51.93 -0.42 0.91 16 41 H 0.05 0.87 7.80 -51.93 -0.41 0.46 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.16 2.09 7.17 -52.49 -0.38 1.71 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -33.61 375.88 -11.15 -44.76 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.38 Total: 9.69 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -5.09 Total: 0.11 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.40 Total: -65.86 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.61 -11.15 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097383274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.148 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds