Wall clock time and date at job start Tue Mar 31 2020 23:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.40384 * 120.22557 * 2 1 4 4 C 1.35037 * 120.44768 * 179.64789 * 3 2 1 5 5 N 1.36534 * 120.59222 * 0.58857 * 4 3 2 6 6 C 1.36249 * 132.78452 * 179.29807 * 5 4 3 7 7 N 1.30180 * 109.81853 * 180.02562 * 6 5 4 8 8 C 1.34892 * 109.73657 * 359.97438 * 7 6 5 9 9 C 1.46285 * 126.49410 * 179.97438 * 8 7 6 10 10 O 1.21775 * 120.00000 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00256 * 0.03296 * 9 8 7 12 12 C 1.46505 * 120.00000 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.68344 * 32.00933 * 12 11 9 14 14 C 1.55483 * 110.75320 * 268.95354 * 12 11 9 15 15 C 1.55846 * 103.32268 * 241.51324 * 14 12 11 16 16 H 1.09004 * 116.12541 * 159.23122 * 15 14 12 17 17 C 1.55379 * 105.04806 * 288.04244 * 15 14 12 18 18 C 1.54847 * 103.48731 * 72.07685 * 17 15 14 19 19 C 1.55840 * 110.62631 * 154.99889 * 12 11 9 20 20 H 1.09001 * 116.12955 * 319.33407 * 19 12 11 21 21 N 1.50232 * 101.05441 * 85.54706 * 19 12 11 22 22 C 1.36942 * 130.84178 * 233.92880 * 21 19 12 23 23 H 1.07992 * 119.99655 * 10.12825 * 22 21 19 24 24 C 1.38813 * 120.00011 * 190.11965 * 22 21 19 25 25 N 1.31617 * 119.99985 * 9.08242 * 24 22 21 26 26 Si 1.86794 * 119.99708 * 189.07763 * 24 22 21 27 27 H 1.48503 * 109.47180 * 265.02099 * 26 24 22 28 28 H 1.48503 * 109.46897 * 145.02055 * 26 24 22 29 29 H 1.48501 * 109.47273 * 25.02200 * 26 24 22 30 30 C 1.37269 * 120.02900 * 359.57450 * 5 4 3 31 31 C 1.36334 * 120.21776 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47672 * 269.98197 * 1 2 3 33 33 H 1.09004 * 109.46842 * 29.97997 * 1 2 3 34 34 H 1.09001 * 109.47625 * 149.97911 * 1 2 3 35 35 H 1.08001 * 119.77680 * 359.97438 * 3 2 1 36 36 H 1.07995 * 119.69713 * 179.88800 * 4 3 2 37 37 H 1.07994 * 125.08797 * 359.97438 * 6 5 4 38 38 H 0.97002 * 120.00103 * 359.97438 * 11 9 8 39 39 H 1.08997 * 110.60842 * 123.10132 * 14 12 11 40 40 H 1.08993 * 110.89257 * 0.06148 * 14 12 11 41 41 H 1.09004 * 110.71412 * 313.52354 * 17 15 14 42 42 H 1.09000 * 110.50404 * 190.53185 * 17 15 14 43 43 H 1.09003 * 110.62764 * 241.38817 * 18 17 15 44 44 H 1.08997 * 110.62790 * 118.36683 * 18 17 15 45 45 H 0.96994 * 119.99817 * 180.02562 * 25 24 22 46 46 H 1.08000 * 120.40315 * 359.95960 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2130 0.0000 4 6 3.5640 1.2182 0.0072 5 7 4.2634 0.0457 0.0024 6 6 5.5963 -0.2368 -0.0048 7 7 5.7741 -1.5264 -0.0075 8 6 4.5786 -2.1511 -0.0016 9 6 4.3521 -3.5963 -0.0027 10 8 3.2160 -4.0346 0.0027 11 7 5.4008 -4.4429 -0.0095 12 6 5.1739 -5.8902 -0.0112 13 1 4.2574 -6.1356 -0.5477 14 6 5.1221 -6.4415 1.4417 15 6 6.3159 -7.4421 1.4890 16 1 6.6963 -7.6889 2.4803 17 6 5.8612 -8.6535 0.6287 18 6 5.9141 -8.1080 -0.8195 19 6 6.3917 -6.6361 -0.6351 20 1 6.8389 -6.1731 -1.5148 21 7 7.2898 -6.7725 0.5615 22 6 8.5959 -6.4053 0.7475 23 1 9.0933 -5.7890 0.0132 24 6 9.2804 -6.8250 1.8798 25 7 8.7398 -7.7167 2.6828 26 14 10.9688 -6.1242 2.2637 27 1 12.0150 -7.0315 1.7274 28 1 11.1295 -5.9981 3.7347 29 1 11.1042 -4.7860 1.6345 30 6 3.5947 -1.1531 -0.0009 31 6 2.1931 -1.1781 -0.0005 32 1 -0.3634 -0.0003 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3634 -0.8898 -0.5141 35 1 1.6737 2.1483 -0.0004 36 1 4.0954 2.1584 0.0052 37 1 6.3868 0.4989 -0.0087 38 1 6.3059 -4.0938 -0.0141 39 1 4.1799 -6.9589 1.6223 40 1 5.2638 -5.6401 2.1668 41 1 4.8460 -8.9523 0.8897 42 1 6.5514 -9.4884 0.7500 43 1 4.9250 -8.1363 -1.2768 44 1 6.6305 -8.6723 -1.4165 45 1 9.2179 -8.0097 3.4742 46 1 1.6633 -2.1192 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097383274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:13 Heat of formation + Delta-G solvation = 74.656793 kcal Electronic energy + Delta-G solvation = -29421.146905 eV Core-core repulsion = 25505.190584 eV Total energy + Delta-G solvation = -3915.956321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.85392 -41.17918 -39.68814 -38.74386 -35.24317 -35.01834 -34.36394 -32.21918 -30.98088 -30.88624 -30.31565 -29.38853 -27.70950 -26.11822 -24.90504 -24.11464 -23.03941 -22.40123 -21.52117 -21.04257 -20.30010 -19.18621 -18.82345 -17.68469 -17.48217 -17.13830 -17.06923 -16.77251 -16.22864 -15.90134 -15.63716 -15.43894 -15.28182 -15.11852 -14.80951 -14.34781 -14.34115 -13.75672 -13.66774 -13.41963 -12.95316 -12.94318 -12.86326 -12.82865 -12.70033 -12.61542 -12.48092 -12.11427 -11.94789 -11.90923 -11.72351 -11.57122 -11.42868 -11.34467 -11.07344 -10.76183 -10.73209 -10.36871 -9.95221 -8.83844 -8.51664 -7.79924 -5.15508 -0.38018 0.09149 1.28807 1.47014 1.48479 1.49282 1.57521 2.26783 2.37985 2.51012 2.60118 3.35267 3.40494 3.42910 3.44720 3.70524 3.80035 3.81765 4.01069 4.06519 4.13763 4.24526 4.27698 4.45273 4.48565 4.54582 4.63401 4.67556 4.69808 4.80704 4.83205 4.84850 4.89856 5.00453 5.08522 5.14608 5.16695 5.20110 5.27124 5.37762 5.40002 5.53346 5.55499 5.62216 5.74146 5.88414 6.13950 6.21489 6.51126 6.79829 7.03929 7.30381 7.71196 8.59794 9.31115 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.003087 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.168086 B = 9067.535487 C =10440.820009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.136 4.136 4 C 0.064 3.936 5 N -0.371 5.371 6 C 0.152 3.848 7 N -0.452 5.452 8 C -0.124 4.124 9 C 0.597 3.403 10 O -0.585 6.585 11 N -0.695 5.695 12 C 0.142 3.858 13 H 0.090 0.910 14 C -0.134 4.134 15 C 0.147 3.853 16 H 0.103 0.897 17 C -0.125 4.125 18 C -0.118 4.118 19 C 0.124 3.876 20 H 0.096 0.904 21 N -0.609 5.609 22 C -0.217 4.217 23 H 0.079 0.921 24 C -0.066 4.066 25 N -0.944 5.944 26 Si 0.972 3.028 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.271 1.271 30 C 0.083 3.917 31 C -0.128 4.128 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.198 0.802 36 H 0.221 0.779 37 H 0.262 0.738 38 H 0.405 0.595 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.246 0.754 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.010 22.068 -7.289 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.156 4.156 4 C -0.056 4.056 5 N -0.042 5.042 6 C -0.125 4.125 7 N -0.166 5.166 8 C -0.255 4.255 9 C 0.386 3.614 10 O -0.468 6.468 11 N -0.342 5.342 12 C 0.036 3.964 13 H 0.108 0.892 14 C -0.174 4.174 15 C 0.041 3.959 16 H 0.120 0.880 17 C -0.164 4.164 18 C -0.158 4.158 19 C 0.016 3.984 20 H 0.114 0.886 21 N -0.330 5.330 22 C -0.346 4.346 23 H 0.097 0.903 24 C -0.259 4.259 25 N -0.593 5.593 26 Si 0.802 3.198 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.196 1.196 30 C -0.031 4.031 31 C -0.148 4.148 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.215 0.785 36 H 0.237 0.763 37 H 0.277 0.723 38 H 0.240 0.760 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.579 21.372 -7.150 27.397 hybrid contribution 1.079 0.123 0.641 1.261 sum -14.500 21.495 -6.509 26.733 Atomic orbital electron populations 1.20916 0.87644 1.04599 1.03923 1.20456 0.98754 0.91776 0.94421 1.21399 0.92352 1.00068 1.01762 1.22719 0.93758 0.88764 1.00387 1.43292 1.08505 1.06602 1.45780 1.25898 0.83371 0.93719 1.09558 1.69973 1.26051 1.06279 1.14274 1.20302 0.89002 0.93206 1.22976 1.16867 0.84473 0.84434 0.75606 1.90699 1.22993 1.78678 1.54394 1.45758 1.09193 1.06477 1.72768 1.22585 0.98797 0.78610 0.96418 0.89179 1.23438 0.99053 0.99040 0.95863 1.23175 0.86163 0.90451 0.96112 0.87979 1.22817 0.99536 0.98045 0.96025 1.22822 1.00764 0.95642 0.96524 1.23360 0.89269 0.95124 0.90602 0.88630 1.46696 1.07689 1.68985 1.09657 1.19297 0.86648 1.23672 1.05010 0.90323 1.25476 1.01706 0.99679 0.99037 1.69888 1.39154 1.34174 1.16133 0.85142 0.80028 0.78184 0.76474 1.21636 1.22492 1.19605 1.19367 0.93749 0.85845 1.04155 1.20586 0.89274 1.00785 1.04130 0.89417 0.88135 0.91395 0.78499 0.76278 0.72262 0.75994 0.90892 0.95000 0.90804 0.94431 0.89796 0.92407 0.94508 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.03 71.23 0.71 -0.32 16 2 C -0.05 -0.75 5.89 -19.79 -0.12 -0.87 16 3 C -0.14 -1.16 9.67 22.06 0.21 -0.95 16 4 C 0.06 0.64 10.95 83.22 0.91 1.55 16 5 N -0.37 -7.64 2.94 -350.66 -1.03 -8.67 16 6 C 0.15 3.38 12.73 179.97 2.29 5.67 16 7 N -0.45 -14.96 10.90 -187.25 -2.04 -17.00 16 8 C -0.12 -4.51 7.05 41.23 0.29 -4.22 16 9 C 0.60 24.66 7.77 86.33 0.67 25.33 16 10 O -0.59 -25.74 15.40 -4.59 -0.07 -25.81 16 11 N -0.69 -28.81 5.09 -438.14 -2.23 -31.04 16 12 C 0.14 5.81 2.82 46.83 0.13 5.95 16 13 H 0.09 3.54 7.23 -2.39 -0.02 3.52 16 14 C -0.13 -5.89 6.25 32.43 0.20 -5.68 16 15 C 0.15 7.24 4.61 46.06 0.21 7.45 16 16 H 0.10 5.83 5.87 -2.38 -0.01 5.82 16 17 C -0.12 -5.22 6.42 32.04 0.21 -5.01 16 18 C -0.12 -4.42 6.44 32.21 0.21 -4.21 16 19 C 0.12 5.17 5.06 46.23 0.23 5.41 16 20 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 21 N -0.61 -31.10 2.98 -616.12 -1.83 -32.93 16 22 C -0.22 -12.21 10.55 84.03 0.89 -11.32 16 23 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 24 C -0.07 -3.79 5.47 84.86 0.46 -3.33 16 25 N -0.94 -57.06 10.74 21.65 0.23 -56.83 16 26 Si 0.97 46.88 29.56 68.60 2.03 48.91 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 30 C 0.08 2.45 6.72 39.23 0.26 2.71 16 31 C -0.13 -3.23 9.38 22.30 0.21 -3.02 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.35 8.10 -2.38 -0.02 0.33 16 34 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.22 -0.11 8.06 -2.91 -0.02 -0.13 16 37 H 0.26 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.41 17.47 8.36 -92.71 -0.77 16.69 16 39 H 0.07 2.90 7.80 -2.39 -0.02 2.88 16 40 H 0.03 1.53 8.00 -2.39 -0.02 1.52 16 41 H 0.07 2.65 7.80 -2.39 -0.02 2.63 16 42 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.08 2.62 7.82 -2.39 -0.02 2.60 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 46 H 0.14 3.92 7.17 -2.91 -0.02 3.89 16 Total: -1.00 -80.76 375.88 3.28 -77.48 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.24 Total: 30.76 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 7.99 Total: 15.14 kcal Atomic # 7 Polarization: -139.56 SS G_CDS: -6.90 Total: -146.47 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.07 Total: -25.81 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -80.76 3.28 -77.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097383274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.133 kcal (2) G-P(sol) polarization free energy of solvation -80.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds