Wall clock time and date at job start Tue Mar 31 2020 23:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30374 * 125.96358 * 2 1 4 4 N 1.39916 * 109.02064 * 180.02562 * 3 2 1 5 5 C 1.46493 * 125.74458 * 179.97438 * 4 3 2 6 6 C 1.34419 * 108.51131 * 359.75756 * 4 3 2 7 7 F 1.35108 * 126.34073 * 180.25219 * 6 4 3 8 8 C 1.38498 * 107.31525 * 0.37428 * 6 4 3 9 9 C 1.47162 * 126.46240 * 179.89289 * 8 6 4 10 10 O 1.21640 * 120.00044 * 269.68814 * 9 8 6 11 11 N 1.34779 * 119.99992 * 89.96092 * 9 8 6 12 12 C 1.46501 * 120.00038 * 179.72608 * 11 9 8 13 13 C 1.52998 * 109.47226 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.50982 * 60.00180 * 13 12 11 15 15 C 1.53289 * 109.51399 * 180.10318 * 13 12 11 16 16 N 1.47150 * 108.38322 * 172.23004 * 15 13 12 17 17 C 1.36943 * 120.98403 * 129.44488 * 16 15 13 18 18 H 1.08002 * 119.99919 * 333.75626 * 17 16 15 19 19 C 1.38812 * 120.00098 * 153.75751 * 17 16 15 20 20 N 1.31618 * 120.00172 * 160.00796 * 19 17 16 21 21 Si 1.86803 * 119.99925 * 340.00190 * 19 17 16 22 22 H 1.48504 * 109.46908 * 91.87418 * 21 19 17 23 23 H 1.48498 * 109.46857 * 211.87451 * 21 19 17 24 24 H 1.48500 * 109.47377 * 331.87353 * 21 19 17 25 25 C 1.47152 * 118.03456 * 309.46037 * 16 15 13 26 26 C 1.53288 * 108.38576 * 50.54073 * 25 16 15 27 27 O 1.42957 * 109.26379 * 307.72276 * 26 25 16 28 28 H 1.09000 * 109.47402 * 269.98226 * 1 2 3 29 29 H 1.09000 * 109.47075 * 29.98245 * 1 2 3 30 30 H 1.09005 * 109.47114 * 149.98135 * 1 2 3 31 31 H 1.09005 * 109.47477 * 89.97519 * 5 4 3 32 32 H 1.09001 * 109.47441 * 209.97597 * 5 4 3 33 33 H 1.09001 * 109.47108 * 329.97119 * 5 4 3 34 34 H 0.96996 * 119.99648 * 359.73167 * 11 9 8 35 35 H 1.08998 * 109.47238 * 300.00611 * 12 11 9 36 36 H 1.09002 * 109.47007 * 60.00157 * 12 11 9 37 37 H 1.09000 * 109.46960 * 59.99725 * 14 13 12 38 38 H 1.09001 * 109.46719 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46699 * 300.00077 * 14 13 12 40 40 H 1.09006 * 109.68171 * 291.94841 * 15 13 12 41 41 H 1.08999 * 109.68077 * 52.46714 * 15 13 12 42 42 H 0.96998 * 120.00429 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.68047 * 170.26022 * 25 16 15 44 44 H 1.09004 * 109.68113 * 290.81504 * 25 16 15 45 45 H 1.09004 * 109.51729 * 67.61655 * 26 25 16 46 46 H 1.08996 * 109.52038 * 187.72290 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7762 1.5355 -0.0013 6 6 3.6479 -0.6962 0.0044 7 9 4.7577 -1.4667 0.0104 8 6 2.3374 -1.1445 -0.0004 9 6 1.8930 -2.5474 0.0002 10 8 1.7084 -3.1274 -1.0529 11 7 1.6852 -3.1879 1.1677 12 6 1.2370 -4.5826 1.1684 13 6 1.0795 -5.0671 2.6111 14 6 0.0456 -4.1993 3.3315 15 6 0.6130 -6.5273 2.6129 16 7 0.6498 -7.0245 3.9973 17 6 -0.4338 -7.6541 4.5493 18 1 -1.4272 -7.4393 4.1839 19 6 -0.2556 -8.5683 5.5785 20 7 -1.2631 -8.8758 6.3675 21 14 1.4144 -9.3624 5.8435 22 1 2.1983 -8.5549 6.8124 23 1 1.2302 -10.7355 6.3782 24 1 2.1421 -9.4281 4.5507 25 6 1.8853 -6.8249 4.7713 26 6 2.2899 -5.3502 4.6644 27 8 2.3360 -4.9725 3.2864 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 5.0654 1.7563 1.0262 32 1 5.6045 1.0477 -0.5151 33 1 4.5256 2.4633 -0.5156 34 1 1.8323 -2.7253 2.0075 35 1 0.2793 -4.6568 0.6532 36 1 1.9739 -5.2013 0.6562 37 1 -0.9125 -4.2733 2.8171 38 1 -0.0657 -4.5448 4.3594 39 1 0.3789 -3.1615 3.3314 40 1 -0.4050 -6.5879 2.2280 41 1 1.2774 -7.1256 1.9895 42 1 -1.1387 -9.5150 7.0865 43 1 1.7098 -7.0826 5.8158 44 1 2.6782 -7.4534 4.3657 45 1 1.5581 -4.7331 5.1859 46 1 3.2724 -5.2085 5.1146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108371342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:22 Heat of formation + Delta-G solvation = -8.017178 kcal Electronic energy + Delta-G solvation = -30578.931437 eV Core-core repulsion = 26228.620879 eV Total energy + Delta-G solvation = -4350.310558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.60657 -41.69401 -39.79503 -38.78461 -35.19639 -34.54251 -34.44027 -32.21122 -31.45831 -30.68680 -29.82579 -28.42157 -27.03565 -26.37384 -25.59571 -23.19543 -22.82506 -21.49983 -21.00689 -20.30459 -19.12599 -18.28360 -17.28356 -17.16343 -16.86242 -16.40775 -16.19823 -15.65606 -15.55819 -15.04537 -14.75450 -14.62759 -14.41117 -14.04401 -13.98663 -13.90182 -13.84600 -13.65201 -13.42817 -13.03524 -12.75515 -12.65580 -12.48109 -12.42721 -12.27820 -11.87454 -11.60884 -11.46994 -11.22614 -11.03176 -10.83060 -10.41180 -10.31095 -10.08787 -9.69963 -9.69134 -9.55730 -9.42024 -9.05651 -9.00469 -8.60373 -7.05190 -6.01750 -3.38982 1.03030 1.55211 1.94088 2.47165 3.23724 3.25798 3.44491 3.47419 3.50129 3.97109 4.04257 4.40797 4.46007 4.59987 4.72255 4.72839 4.82638 4.88445 4.94712 5.14084 5.22121 5.27969 5.30127 5.37472 5.41938 5.51568 5.71648 5.76679 5.81208 5.86947 5.96950 6.01106 6.06609 6.21916 6.22416 6.31508 6.42838 6.46274 6.48986 6.56198 6.72631 7.01188 7.51359 7.60858 7.81696 8.19279 8.23761 8.81705 9.62587 9.98513 11.13796 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.002661 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.882102 B =10521.347871 C =10957.975104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.134 3.866 3 N -0.272 5.272 4 N -0.375 5.375 5 C 0.093 3.907 6 C 0.295 3.705 7 F -0.087 7.087 8 C -0.288 4.288 9 C 0.596 3.404 10 O -0.533 6.533 11 N -0.705 5.705 12 C 0.137 3.863 13 C 0.086 3.914 14 C -0.167 4.167 15 C 0.131 3.869 16 N -0.604 5.604 17 C -0.260 4.260 18 H 0.089 0.911 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.089 3.911 26 C 0.046 3.954 27 O -0.380 6.380 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.405 0.595 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.056 0.944 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 21.371 -10.559 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 N -0.095 5.095 4 N -0.160 5.160 5 C -0.048 4.048 6 C 0.148 3.852 7 F -0.066 7.066 8 C -0.304 4.304 9 C 0.379 3.621 10 O -0.410 6.410 11 N -0.356 5.356 12 C 0.013 3.987 13 C 0.045 3.955 14 C -0.224 4.224 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.387 4.387 18 H 0.106 0.894 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.231 1.231 24 H -0.195 1.195 25 C -0.036 4.036 26 C -0.032 4.032 27 O -0.299 6.299 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.568 22.189 -11.265 26.661 hybrid contribution 1.395 -1.441 0.922 2.207 sum 10.963 20.748 -10.343 25.645 Atomic orbital electron populations 1.20358 0.85032 1.04441 1.04063 1.22222 0.97257 0.87926 0.95872 1.77316 0.84096 1.21169 1.26898 1.48670 1.07330 1.02595 1.57422 1.22076 0.83636 0.94665 1.04414 1.17801 0.83415 0.81829 1.02176 1.91681 1.49633 1.71530 1.93729 1.19707 0.90336 0.95738 1.24597 1.16987 0.77252 0.83901 0.83931 1.90811 1.51325 1.67428 1.31390 1.45920 1.67659 1.13687 1.08348 1.21413 1.00900 0.81069 0.95294 1.22241 0.85115 0.97506 0.90625 1.22261 0.98743 0.98208 1.03234 1.21460 1.00321 0.90374 0.87400 1.44306 1.12737 1.67631 1.08150 1.18895 0.86220 1.17699 1.15934 0.89351 1.25240 0.96775 0.97850 0.97655 1.69814 1.31335 1.35866 1.17946 0.86981 0.85157 0.78464 0.77995 1.21655 1.23090 1.19538 1.22024 0.89532 0.94405 0.97689 1.23083 1.00939 0.96867 0.82324 1.87847 1.30476 1.88006 1.23587 0.89336 0.89852 0.89554 0.89726 0.88988 0.88106 0.75952 0.89684 0.90619 0.91633 0.90247 0.93333 0.90728 0.94817 0.92667 0.90109 0.94827 0.92569 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.28 36.00 0.37 -0.27 16 2 C 0.13 1.45 7.26 -82.01 -0.60 0.85 16 3 N -0.27 -2.96 12.49 33.91 0.42 -2.53 16 4 N -0.38 -3.64 3.98 -67.94 -0.27 -3.91 16 5 C 0.09 0.46 11.43 59.84 0.68 1.14 16 6 C 0.30 3.39 8.70 -16.32 -0.14 3.24 16 7 F -0.09 -0.99 17.31 2.25 0.04 -0.96 16 8 C -0.29 -3.57 5.89 -104.98 -0.62 -4.18 16 9 C 0.60 8.43 7.35 -12.64 -0.09 8.34 16 10 O -0.53 -9.33 17.11 5.24 0.09 -9.24 16 11 N -0.71 -9.14 5.15 -61.47 -0.32 -9.46 16 12 C 0.14 1.93 4.82 -4.04 -0.02 1.91 16 13 C 0.09 1.36 0.76 -90.47 -0.07 1.29 16 14 C -0.17 -2.46 7.92 37.16 0.29 -2.16 16 15 C 0.13 2.49 5.40 -3.54 -0.02 2.47 16 16 N -0.60 -13.74 2.35 -171.83 -0.40 -14.14 16 17 C -0.26 -6.95 10.10 -15.06 -0.15 -7.10 16 18 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 19 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 20 N -0.91 -27.08 13.97 55.49 0.78 -26.30 16 21 Si 0.88 21.95 24.29 -169.99 -4.13 17.82 16 22 H -0.29 -6.85 6.58 56.52 0.37 -6.48 16 23 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 24 H -0.27 -6.69 6.55 56.52 0.37 -6.32 16 25 C 0.09 1.88 4.38 -3.54 -0.02 1.87 16 26 C 0.05 0.79 6.60 37.31 0.25 1.03 16 27 O -0.38 -6.41 9.98 -35.23 -0.35 -6.76 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.72 8.01 -51.93 -0.42 0.30 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.41 4.81 7.18 -40.82 -0.29 4.51 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.38 6.11 -51.93 -0.32 1.07 16 39 H 0.05 0.60 6.86 -51.93 -0.36 0.25 16 40 H 0.07 1.37 7.95 -51.93 -0.41 0.95 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.08 1.84 4.61 -51.93 -0.24 1.60 16 44 H 0.03 0.73 6.87 -51.93 -0.36 0.37 16 45 H 0.06 0.95 6.25 -51.93 -0.32 0.62 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -33.73 374.64 -5.28 -39.02 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.56 Total: 1.80 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.22 Total: 9.02 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.21 Total: -56.34 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.26 Total: -16.00 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.13 Total: 17.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.73 -5.28 -39.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108371342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.000 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds