Wall clock time and date at job start Tue Mar 31 2020 23:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30374 * 125.96358 * 2 1 4 4 N 1.39916 * 109.02064 * 180.02562 * 3 2 1 5 5 C 1.46493 * 125.74458 * 179.97438 * 4 3 2 6 6 C 1.34419 * 108.51131 * 359.75756 * 4 3 2 7 7 F 1.35108 * 126.34073 * 180.25219 * 6 4 3 8 8 C 1.38498 * 107.31525 * 0.37428 * 6 4 3 9 9 C 1.47162 * 126.46240 * 179.89289 * 8 6 4 10 10 O 1.21640 * 120.00044 * 269.68814 * 9 8 6 11 11 N 1.34779 * 119.99992 * 89.96092 * 9 8 6 12 12 C 1.46501 * 120.00038 * 179.72608 * 11 9 8 13 13 C 1.52998 * 109.47226 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.50982 * 60.00180 * 13 12 11 15 15 C 1.53289 * 109.51399 * 180.10318 * 13 12 11 16 16 N 1.47150 * 108.38322 * 172.23004 * 15 13 12 17 17 C 1.36943 * 120.98403 * 129.44488 * 16 15 13 18 18 H 1.08002 * 119.99919 * 333.75626 * 17 16 15 19 19 C 1.38812 * 120.00098 * 153.75751 * 17 16 15 20 20 N 1.31618 * 120.00172 * 160.00796 * 19 17 16 21 21 Si 1.86803 * 119.99925 * 340.00190 * 19 17 16 22 22 H 1.48504 * 109.46908 * 91.87418 * 21 19 17 23 23 H 1.48498 * 109.46857 * 211.87451 * 21 19 17 24 24 H 1.48500 * 109.47377 * 331.87353 * 21 19 17 25 25 C 1.47152 * 118.03456 * 309.46037 * 16 15 13 26 26 C 1.53288 * 108.38576 * 50.54073 * 25 16 15 27 27 O 1.42957 * 109.26379 * 307.72276 * 26 25 16 28 28 H 1.09000 * 109.47402 * 269.98226 * 1 2 3 29 29 H 1.09000 * 109.47075 * 29.98245 * 1 2 3 30 30 H 1.09005 * 109.47114 * 149.98135 * 1 2 3 31 31 H 1.09005 * 109.47477 * 89.97519 * 5 4 3 32 32 H 1.09001 * 109.47441 * 209.97597 * 5 4 3 33 33 H 1.09001 * 109.47108 * 329.97119 * 5 4 3 34 34 H 0.96996 * 119.99648 * 359.73167 * 11 9 8 35 35 H 1.08998 * 109.47238 * 300.00611 * 12 11 9 36 36 H 1.09002 * 109.47007 * 60.00157 * 12 11 9 37 37 H 1.09000 * 109.46960 * 59.99725 * 14 13 12 38 38 H 1.09001 * 109.46719 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.46699 * 300.00077 * 14 13 12 40 40 H 1.09006 * 109.68171 * 291.94841 * 15 13 12 41 41 H 1.08999 * 109.68077 * 52.46714 * 15 13 12 42 42 H 0.96998 * 120.00429 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.68047 * 170.26022 * 25 16 15 44 44 H 1.09004 * 109.68113 * 290.81504 * 25 16 15 45 45 H 1.09004 * 109.51729 * 67.61655 * 26 25 16 46 46 H 1.08996 * 109.52038 * 187.72290 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7762 1.5355 -0.0013 6 6 3.6479 -0.6962 0.0044 7 9 4.7577 -1.4667 0.0104 8 6 2.3374 -1.1445 -0.0004 9 6 1.8930 -2.5474 0.0002 10 8 1.7084 -3.1274 -1.0529 11 7 1.6852 -3.1879 1.1677 12 6 1.2370 -4.5826 1.1684 13 6 1.0795 -5.0671 2.6111 14 6 0.0456 -4.1993 3.3315 15 6 0.6130 -6.5273 2.6129 16 7 0.6498 -7.0245 3.9973 17 6 -0.4338 -7.6541 4.5493 18 1 -1.4272 -7.4393 4.1839 19 6 -0.2556 -8.5683 5.5785 20 7 -1.2631 -8.8758 6.3675 21 14 1.4144 -9.3624 5.8435 22 1 2.1983 -8.5549 6.8124 23 1 1.2302 -10.7355 6.3782 24 1 2.1421 -9.4281 4.5507 25 6 1.8853 -6.8249 4.7713 26 6 2.2899 -5.3502 4.6644 27 8 2.3360 -4.9725 3.2864 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 5.0654 1.7563 1.0262 32 1 5.6045 1.0477 -0.5151 33 1 4.5256 2.4633 -0.5156 34 1 1.8323 -2.7253 2.0075 35 1 0.2793 -4.6568 0.6532 36 1 1.9739 -5.2013 0.6562 37 1 -0.9125 -4.2733 2.8171 38 1 -0.0657 -4.5448 4.3594 39 1 0.3789 -3.1615 3.3314 40 1 -0.4050 -6.5879 2.2280 41 1 1.2774 -7.1256 1.9895 42 1 -1.1387 -9.5150 7.0865 43 1 1.7098 -7.0826 5.8158 44 1 2.6782 -7.4534 4.3657 45 1 1.5581 -4.7331 5.1859 46 1 3.2724 -5.2085 5.1146 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108371342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:21 Heat of formation + Delta-G solvation = -32.960813 kcal Electronic energy + Delta-G solvation = -30580.013075 eV Core-core repulsion = 26228.620879 eV Total energy + Delta-G solvation = -4351.392195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.46633 -42.49674 -41.09517 -40.03421 -36.75836 -35.87154 -35.22147 -33.75522 -33.21628 -31.51351 -30.48774 -29.92411 -28.15283 -27.79215 -26.62662 -24.80543 -23.94244 -22.91619 -21.88643 -21.27926 -20.52121 -19.25414 -18.89069 -18.10736 -17.96430 -17.50063 -17.32380 -17.19323 -16.83954 -16.06731 -15.93687 -15.83618 -15.74355 -15.52100 -15.46115 -15.07694 -14.59770 -14.47627 -14.32129 -14.24185 -13.99104 -13.77438 -13.69141 -13.42410 -13.27421 -13.25460 -13.01390 -12.91135 -12.57765 -12.34165 -12.14373 -12.07948 -12.04816 -11.55127 -11.31463 -11.19517 -11.02034 -10.48004 -10.42511 -10.14023 -9.89772 -8.93971 -8.17409 -5.50177 0.20935 0.86586 1.12554 1.26894 1.40107 1.41292 1.48856 2.17468 2.39206 2.68586 2.74130 3.02258 3.22729 3.28655 3.73743 3.78647 3.88528 3.96437 4.00841 4.12358 4.23443 4.25988 4.30154 4.30597 4.46870 4.58413 4.58532 4.68873 4.69741 4.75761 4.77167 4.78477 4.86210 4.89666 4.97396 5.03047 5.07773 5.32220 5.32650 5.40531 5.60738 5.80074 6.10479 6.23969 6.24295 6.46028 6.83314 7.12174 7.56104 7.96788 9.01862 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.002661 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.882102 B =10521.347871 C =10957.975104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.132 3.868 3 N -0.282 5.282 4 N -0.368 5.368 5 C 0.080 3.920 6 C 0.290 3.710 7 F -0.089 7.089 8 C -0.310 4.310 9 C 0.602 3.398 10 O -0.572 6.572 11 N -0.694 5.694 12 C 0.145 3.855 13 C 0.097 3.903 14 C -0.160 4.160 15 C 0.125 3.875 16 N -0.616 5.616 17 C -0.242 4.242 18 H 0.061 0.939 19 C -0.032 4.032 20 N -0.954 5.954 21 Si 0.942 3.058 22 H -0.270 1.270 23 H -0.313 1.313 24 H -0.269 1.269 25 C 0.081 3.919 26 C 0.055 3.945 27 O -0.379 6.379 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.413 0.587 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.262 0.738 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.061 0.939 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.238 23.750 -10.980 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 N -0.105 5.105 4 N -0.152 5.152 5 C -0.058 4.058 6 C 0.141 3.859 7 F -0.068 7.068 8 C -0.327 4.327 9 C 0.387 3.613 10 O -0.451 6.451 11 N -0.345 5.345 12 C 0.021 3.979 13 C 0.056 3.944 14 C -0.218 4.218 15 C -0.001 4.001 16 N -0.341 5.341 17 C -0.371 4.371 18 H 0.079 0.921 19 C -0.227 4.227 20 N -0.600 5.600 21 Si 0.772 3.228 22 H -0.197 1.197 23 H -0.242 1.242 24 H -0.194 1.194 25 C -0.043 4.043 26 C -0.023 4.023 27 O -0.298 6.298 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.250 0.750 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.440 24.632 -11.689 29.567 hybrid contribution 0.832 -2.097 0.974 2.457 sum 12.273 22.535 -10.715 27.807 Atomic orbital electron populations 1.20466 0.83404 1.04808 1.05189 1.22576 0.98332 0.87207 0.95276 1.77295 0.84685 1.21270 1.27247 1.49032 1.07977 1.02369 1.55844 1.22509 0.82576 0.94699 1.06048 1.17837 0.83107 0.82669 1.02270 1.91672 1.49646 1.71744 1.93761 1.19643 0.91257 0.95084 1.26691 1.17171 0.76311 0.84438 0.83368 1.90791 1.53099 1.68498 1.32697 1.45795 1.67074 1.13052 1.08569 1.21255 1.01237 0.81594 0.93839 1.22093 0.85108 0.95490 0.91702 1.22188 0.98848 0.99389 1.01327 1.21642 1.00701 0.92445 0.85331 1.44387 1.12295 1.67523 1.09890 1.18835 0.86549 1.16834 1.14859 0.92126 1.25804 0.99855 0.98943 0.98123 1.69934 1.33519 1.37320 1.19237 0.86015 0.81622 0.76997 0.78164 1.19652 1.24248 1.19388 1.22111 0.88508 0.97344 0.96384 1.23034 1.02779 0.93772 0.82719 1.87866 1.30857 1.87604 1.23486 0.87748 0.88467 0.90178 0.88006 0.87472 0.86620 0.75017 0.88718 0.91569 0.90999 0.92894 0.90580 0.90654 0.94836 0.92929 0.91769 0.95035 0.92106 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.28 71.24 0.73 -0.39 16 2 C 0.13 2.63 7.26 43.55 0.32 2.94 16 3 N -0.28 -5.53 12.49 -46.64 -0.58 -6.12 16 4 N -0.37 -6.32 3.98 -368.86 -1.47 -7.79 16 5 C 0.08 0.58 11.43 127.77 1.46 2.04 16 6 C 0.29 6.17 8.70 84.36 0.73 6.90 16 7 F -0.09 -1.91 17.31 44.97 0.78 -1.13 16 8 C -0.31 -7.24 5.89 -20.09 -0.12 -7.36 16 9 C 0.60 16.29 7.35 86.59 0.64 16.92 16 10 O -0.57 -19.69 17.11 -4.16 -0.07 -19.76 16 11 N -0.69 -16.61 5.15 -466.62 -2.40 -19.02 16 12 C 0.14 3.84 4.82 86.38 0.42 4.25 16 13 C 0.10 2.88 0.76 -10.70 -0.01 2.87 16 14 C -0.16 -4.39 7.92 71.98 0.57 -3.82 16 15 C 0.12 4.62 5.40 86.35 0.47 5.08 16 16 N -0.62 -27.73 2.35 -697.55 -1.64 -29.37 16 17 C -0.24 -13.12 10.10 84.03 0.85 -12.27 16 18 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 19 C -0.03 -1.84 5.26 84.86 0.45 -1.39 16 20 N -0.95 -58.48 13.97 21.65 0.30 -58.17 16 21 Si 0.94 45.75 24.29 68.60 1.67 47.42 16 22 H -0.27 -12.15 6.58 99.48 0.65 -11.49 16 23 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 24 H -0.27 -12.82 6.55 99.48 0.65 -12.17 16 25 C 0.08 3.31 4.38 86.35 0.38 3.69 16 26 C 0.05 1.73 6.60 72.08 0.48 2.20 16 27 O -0.38 -11.76 9.98 -148.98 -1.49 -13.25 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.22 8.01 -2.38 -0.02 1.21 16 31 H 0.10 0.42 8.14 -2.38 -0.02 0.41 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.41 8.68 7.18 -92.71 -0.67 8.01 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.76 6.11 -2.39 -0.01 1.75 16 39 H 0.08 1.66 6.86 -2.39 -0.02 1.64 16 40 H 0.08 2.74 7.95 -2.38 -0.02 2.72 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.06 2.83 4.61 -2.39 -0.01 2.82 16 44 H 0.03 1.31 6.87 -2.38 -0.02 1.29 16 45 H 0.06 1.90 6.25 -2.38 -0.01 1.88 16 46 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -73.60 374.64 2.69 -70.90 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.25 Total: 14.59 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 7.36 Total: 21.68 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -5.79 Total: -120.46 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.56 Total: -33.01 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.13 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Total: -73.60 2.69 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108371342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.944 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds