Wall clock time and date at job start Tue Mar 31 2020 23:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30876 * 122.98494 * 2 1 4 4 C 1.30234 * 117.26313 * 180.02562 * 3 2 1 5 5 N 1.37838 * 124.75094 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99779 * 359.96717 * 5 4 3 7 7 C 1.46495 * 120.00202 * 179.97438 * 5 4 3 8 8 S 1.70919 * 110.50173 * 359.71894 * 4 3 2 9 9 C 1.36699 * 122.98064 * 179.97438 * 2 1 3 10 10 C 1.46222 * 126.11655 * 0.02562 * 9 2 1 11 11 O 1.21754 * 119.99775 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00622 * 180.02562 * 10 9 2 13 13 C 1.46495 * 120.00230 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47062 * 324.99175 * 13 12 10 15 15 C 1.52999 * 109.47657 * 84.99077 * 13 12 10 16 16 C 1.53002 * 109.47317 * 204.99663 * 13 12 10 17 17 C 1.53003 * 109.47269 * 64.99221 * 16 13 12 18 18 H 1.09000 * 109.46953 * 305.00936 * 17 16 13 19 19 C 1.52996 * 109.47332 * 185.00423 * 17 16 13 20 20 N 1.46505 * 109.46807 * 65.00478 * 17 16 13 21 21 C 1.36931 * 119.99788 * 205.00000 * 20 17 16 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 17 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 17 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.08993 * 109.47265 * 270.00486 * 1 2 3 30 30 H 1.09008 * 109.46797 * 30.00606 * 1 2 3 31 31 H 1.08999 * 109.47284 * 150.00107 * 1 2 3 32 32 H 1.08999 * 109.47251 * 90.00374 * 6 5 4 33 33 H 1.09000 * 109.47387 * 210.00622 * 6 5 4 34 34 H 1.09002 * 109.47349 * 330.00446 * 6 5 4 35 35 H 1.08995 * 109.46967 * 359.97438 * 7 5 4 36 36 H 1.08998 * 109.47313 * 119.99557 * 7 5 4 37 37 H 1.09003 * 109.46790 * 239.99941 * 7 5 4 38 38 H 0.97000 * 119.99724 * 359.97438 * 12 10 9 39 39 H 1.08991 * 109.47415 * 300.00577 * 15 13 12 40 40 H 1.09005 * 109.46583 * 60.00443 * 15 13 12 41 41 H 1.09001 * 109.47265 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.46766 * 304.99737 * 16 13 12 43 43 H 1.08992 * 109.47398 * 184.99831 * 16 13 12 44 44 H 1.08998 * 109.47019 * 59.99816 * 19 17 16 45 45 H 1.08998 * 109.47099 * 180.02562 * 19 17 16 46 46 H 1.09002 * 109.46807 * 300.00318 * 19 17 16 47 47 H 0.97000 * 119.99792 * 24.99795 * 20 17 16 48 48 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5154 0.9680 -0.0005 5 7 4.4101 2.0165 -0.0001 6 6 3.9204 3.3972 0.0003 7 6 5.8507 1.7503 -0.0002 8 16 3.9515 -0.6847 0.0068 9 6 2.2512 -1.1467 0.0005 10 6 1.7295 -2.5127 0.0006 11 8 0.5273 -2.7052 0.0007 12 7 2.5793 -3.5588 0.0016 13 6 2.0566 -4.9273 0.0012 14 1 1.1399 -4.9662 0.5897 15 6 1.7585 -5.3590 -1.4361 16 6 3.0952 -5.8702 0.6120 17 6 3.3012 -5.5160 2.0861 18 1 3.5663 -4.4623 2.1730 19 6 4.4276 -6.3748 2.6644 20 7 2.0633 -5.7707 2.8271 21 6 1.8081 -5.0909 3.9880 22 1 2.5191 -4.3666 4.3572 23 6 0.6324 -5.3281 4.6871 24 7 0.3846 -4.6707 5.8000 25 14 -0.5977 -6.5803 4.0483 26 1 -0.2833 -7.9165 4.6148 27 1 -1.9685 -6.1799 4.4555 28 1 -0.5191 -6.6400 2.5665 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3634 -0.8900 -0.5138 32 1 3.7989 3.7394 1.0280 33 1 4.6377 4.0373 -0.5133 34 1 2.9601 3.4423 -0.5136 35 1 6.0212 0.6737 -0.0002 36 1 6.3014 2.1898 -0.8900 37 1 6.3013 2.1892 0.8900 38 1 3.5372 -3.4054 0.0020 39 1 1.0187 -4.6873 -1.8712 40 1 2.6752 -5.3201 -2.0246 41 1 1.3700 -6.3774 -1.4364 42 1 4.0395 -5.7655 0.0778 43 1 2.7441 -6.8989 0.5311 44 1 5.3486 -6.1853 2.1131 45 1 4.5741 -6.1227 3.7147 46 1 4.1624 -7.4284 2.5775 47 1 1.4245 -6.4210 2.4953 48 1 -0.4367 -4.8366 6.2888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135621985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:32 Heat of formation + Delta-G solvation = 25.202269 kcal Electronic energy + Delta-G solvation = -28115.155793 eV Core-core repulsion = 24332.498914 eV Total energy + Delta-G solvation = -3782.656879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.18392 -39.21187 -37.25596 -36.64063 -34.49661 -32.13373 -31.36393 -30.79009 -29.19329 -28.77939 -27.78465 -26.54669 -26.35784 -23.29241 -22.45745 -22.17370 -20.62669 -19.79100 -19.41395 -18.32538 -17.57605 -16.82861 -16.41406 -16.02909 -15.52668 -14.97119 -14.91091 -14.58820 -14.17207 -13.95573 -13.62931 -13.57834 -13.35299 -13.14736 -13.00373 -12.94393 -12.59347 -12.47906 -12.41206 -12.35965 -12.29881 -12.00118 -11.93243 -11.65555 -11.18325 -11.15557 -10.87628 -10.61751 -10.43498 -10.22324 -10.04185 -9.91100 -9.89558 -9.49248 -9.41927 -9.28407 -8.84024 -8.71952 -7.70099 -7.17186 -5.67057 -3.01703 0.56072 0.93226 1.63977 2.49147 2.66386 3.45676 3.46264 3.49251 3.54130 3.59732 4.25087 4.66491 4.69151 4.83349 4.85041 5.00205 5.13838 5.17731 5.21150 5.27644 5.30194 5.40988 5.48366 5.58042 5.64785 5.78596 5.81394 5.86358 5.88212 5.92450 5.98936 6.05294 6.22180 6.29423 6.31043 6.36612 6.44051 6.47299 6.60489 6.68721 6.80140 6.89510 7.02912 7.72688 7.86713 8.08177 8.51637 8.57064 9.30393 10.03262 10.22482 11.51671 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003434 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.670297 B = 8152.267117 C = 8459.578144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.201 3.799 3 N -0.552 5.552 4 C 0.325 3.675 5 N -0.583 5.583 6 C 0.100 3.900 7 C 0.091 3.909 8 S 0.123 5.877 9 C -0.339 4.339 10 C 0.607 3.393 11 O -0.527 6.527 12 N -0.714 5.714 13 C 0.145 3.855 14 H 0.102 0.898 15 C -0.161 4.161 16 C -0.135 4.135 17 C 0.176 3.824 18 H 0.053 0.947 19 C -0.165 4.165 20 N -0.745 5.745 21 C -0.236 4.236 22 H 0.087 0.913 23 C 0.005 3.995 24 N -0.936 5.936 25 Si 0.883 3.117 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.276 1.276 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.390 0.610 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.360 0.640 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.708 11.538 -17.796 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 N -0.277 5.277 4 C -0.043 4.043 5 N -0.302 5.302 6 C -0.044 4.044 7 C -0.052 4.052 8 S 0.374 5.626 9 C -0.465 4.465 10 C 0.394 3.606 11 O -0.405 6.405 12 N -0.365 5.365 13 C 0.040 3.960 14 H 0.120 0.880 15 C -0.220 4.220 16 C -0.174 4.174 17 C 0.067 3.933 18 H 0.071 0.929 19 C -0.225 4.225 20 N -0.388 5.388 21 C -0.366 4.366 22 H 0.105 0.895 23 C -0.190 4.190 24 N -0.584 5.584 25 Si 0.713 3.287 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.202 1.202 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.224 0.776 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.192 0.808 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.778 11.679 -17.587 24.677 hybrid contribution -1.156 -0.672 -0.127 1.343 sum 11.622 11.007 -17.714 23.875 Atomic orbital electron populations 1.20670 0.86054 1.04042 1.04048 1.20515 0.97843 0.84264 0.91047 1.66020 1.02100 1.31753 1.27835 1.23669 0.90948 0.92669 0.96997 1.45661 1.03802 1.03501 1.77203 1.21703 1.00987 0.79585 1.02172 1.21882 0.78079 1.02399 1.02831 1.83509 1.07474 0.98432 1.73198 1.25066 0.93941 0.98795 1.28661 1.16418 0.86085 0.82235 0.75899 1.90788 1.14302 1.84836 1.50571 1.45799 1.08835 1.06014 1.75827 1.21011 0.99218 0.79808 0.95918 0.87994 1.22196 1.01426 1.01535 0.96827 1.22224 0.98256 0.99354 0.97524 1.20193 0.87293 0.97508 0.88319 0.92851 1.22419 0.97965 1.00467 1.01667 1.42763 1.19750 1.49108 1.27164 1.19003 1.03521 1.16880 0.97223 0.89518 1.24630 0.97766 0.99519 0.97101 1.69696 1.26543 1.44705 1.17440 0.86567 0.81838 0.81767 0.78502 1.21365 1.21853 1.20182 0.89724 0.91186 0.88052 0.92561 0.91086 0.90039 0.90646 0.91031 0.90927 0.77626 0.92293 0.92982 0.91833 0.91620 0.90644 0.94398 0.92420 0.93619 0.80752 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.71 36.01 0.35 -0.99 16 2 C 0.20 3.23 6.83 -83.55 -0.57 2.66 16 3 N -0.55 -8.21 9.71 -10.94 -0.11 -8.31 16 4 C 0.32 4.11 7.72 -87.98 -0.68 3.44 16 5 N -0.58 -5.44 3.36 -192.01 -0.64 -6.08 16 6 C 0.10 0.74 10.59 59.85 0.63 1.38 16 7 C 0.09 0.52 10.70 59.84 0.64 1.16 16 8 S 0.12 1.49 20.44 -107.50 -2.20 -0.71 16 9 C -0.34 -5.45 6.49 -36.93 -0.24 -5.69 16 10 C 0.61 10.93 7.73 -13.05 -0.10 10.83 16 11 O -0.53 -11.09 13.96 5.14 0.07 -11.02 16 12 N -0.71 -11.16 4.44 -55.25 -0.25 -11.41 16 13 C 0.14 2.32 2.52 -67.93 -0.17 2.15 16 14 H 0.10 2.09 7.05 -51.93 -0.37 1.72 16 15 C -0.16 -2.16 9.48 37.16 0.35 -1.80 16 16 C -0.13 -1.98 4.29 -26.73 -0.11 -2.10 16 17 C 0.18 3.29 2.84 -67.93 -0.19 3.09 16 18 H 0.05 1.06 7.56 -51.93 -0.39 0.66 16 19 C -0.17 -2.80 9.49 37.16 0.35 -2.45 16 20 N -0.74 -17.60 4.30 -53.42 -0.23 -17.83 16 21 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 24 N -0.94 -30.31 13.97 55.49 0.78 -29.53 16 25 Si 0.88 23.05 27.74 -169.99 -4.72 18.34 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.81 7.11 56.52 0.40 -7.40 16 28 H -0.28 -6.81 6.51 56.52 0.37 -6.44 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.10 1.63 6.04 -51.93 -0.31 1.31 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 34 H 0.08 0.72 7.59 -51.93 -0.39 0.32 16 35 H 0.07 0.45 6.31 -51.93 -0.33 0.12 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.39 5.15 7.77 -40.82 -0.32 4.84 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 48 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -36.24 401.20 -9.09 -45.33 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -7.85 Total: 10.38 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 0.01 Total: 4.81 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -0.45 Total: -73.17 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.72 Total: 18.34 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.20 Total: -0.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.24 -9.09 -45.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135621985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.530 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds