Wall clock time and date at job start Tue Mar 31 2020 23:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30876 * 122.98494 * 2 1 4 4 C 1.30234 * 117.26313 * 180.02562 * 3 2 1 5 5 N 1.37838 * 124.75094 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99779 * 359.96717 * 5 4 3 7 7 C 1.46495 * 120.00202 * 179.97438 * 5 4 3 8 8 S 1.70919 * 110.50173 * 359.71894 * 4 3 2 9 9 C 1.36699 * 122.98064 * 179.97438 * 2 1 3 10 10 C 1.46222 * 126.11655 * 0.02562 * 9 2 1 11 11 O 1.21754 * 119.99775 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00622 * 180.02562 * 10 9 2 13 13 C 1.46495 * 120.00230 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47062 * 324.99175 * 13 12 10 15 15 C 1.52999 * 109.47657 * 84.99077 * 13 12 10 16 16 C 1.53002 * 109.47317 * 204.99663 * 13 12 10 17 17 C 1.53003 * 109.47269 * 64.99221 * 16 13 12 18 18 H 1.09000 * 109.46953 * 305.00936 * 17 16 13 19 19 C 1.52996 * 109.47332 * 185.00423 * 17 16 13 20 20 N 1.46505 * 109.46807 * 65.00478 * 17 16 13 21 21 C 1.36931 * 119.99788 * 205.00000 * 20 17 16 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 17 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 17 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 H 1.08993 * 109.47265 * 270.00486 * 1 2 3 30 30 H 1.09008 * 109.46797 * 30.00606 * 1 2 3 31 31 H 1.08999 * 109.47284 * 150.00107 * 1 2 3 32 32 H 1.08999 * 109.47251 * 90.00374 * 6 5 4 33 33 H 1.09000 * 109.47387 * 210.00622 * 6 5 4 34 34 H 1.09002 * 109.47349 * 330.00446 * 6 5 4 35 35 H 1.08995 * 109.46967 * 359.97438 * 7 5 4 36 36 H 1.08998 * 109.47313 * 119.99557 * 7 5 4 37 37 H 1.09003 * 109.46790 * 239.99941 * 7 5 4 38 38 H 0.97000 * 119.99724 * 359.97438 * 12 10 9 39 39 H 1.08991 * 109.47415 * 300.00577 * 15 13 12 40 40 H 1.09005 * 109.46583 * 60.00443 * 15 13 12 41 41 H 1.09001 * 109.47265 * 179.97438 * 15 13 12 42 42 H 1.09000 * 109.46766 * 304.99737 * 16 13 12 43 43 H 1.08992 * 109.47398 * 184.99831 * 16 13 12 44 44 H 1.08998 * 109.47019 * 59.99816 * 19 17 16 45 45 H 1.08998 * 109.47099 * 180.02562 * 19 17 16 46 46 H 1.09002 * 109.46807 * 300.00318 * 19 17 16 47 47 H 0.97000 * 119.99792 * 24.99795 * 20 17 16 48 48 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2196 1.0978 0.0000 4 6 3.5154 0.9680 -0.0005 5 7 4.4101 2.0165 -0.0001 6 6 3.9204 3.3972 0.0003 7 6 5.8507 1.7503 -0.0002 8 16 3.9515 -0.6847 0.0068 9 6 2.2512 -1.1467 0.0005 10 6 1.7295 -2.5127 0.0006 11 8 0.5273 -2.7052 0.0007 12 7 2.5793 -3.5588 0.0016 13 6 2.0566 -4.9273 0.0012 14 1 1.1399 -4.9662 0.5897 15 6 1.7585 -5.3590 -1.4361 16 6 3.0952 -5.8702 0.6120 17 6 3.3012 -5.5160 2.0861 18 1 3.5663 -4.4623 2.1730 19 6 4.4276 -6.3748 2.6644 20 7 2.0633 -5.7707 2.8271 21 6 1.8081 -5.0909 3.9880 22 1 2.5191 -4.3666 4.3572 23 6 0.6324 -5.3281 4.6871 24 7 0.3846 -4.6707 5.8000 25 14 -0.5977 -6.5803 4.0483 26 1 -0.2833 -7.9165 4.6148 27 1 -1.9685 -6.1799 4.4555 28 1 -0.5191 -6.6400 2.5665 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3634 -0.8900 -0.5138 32 1 3.7989 3.7394 1.0280 33 1 4.6377 4.0373 -0.5133 34 1 2.9601 3.4423 -0.5136 35 1 6.0212 0.6737 -0.0002 36 1 6.3014 2.1898 -0.8900 37 1 6.3013 2.1892 0.8900 38 1 3.5372 -3.4054 0.0020 39 1 1.0187 -4.6873 -1.8712 40 1 2.6752 -5.3201 -2.0246 41 1 1.3700 -6.3774 -1.4364 42 1 4.0395 -5.7655 0.0778 43 1 2.7441 -6.8989 0.5311 44 1 5.3486 -6.1853 2.1131 45 1 4.5741 -6.1227 3.7147 46 1 4.1624 -7.4284 2.5775 47 1 1.4245 -6.4210 2.4953 48 1 -0.4367 -4.8366 6.2888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135621985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:31 Heat of formation + Delta-G solvation = -0.362348 kcal Electronic energy + Delta-G solvation = -28116.264357 eV Core-core repulsion = 24332.498914 eV Total energy + Delta-G solvation = -3783.765444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32586 -40.42030 -38.47040 -37.76094 -36.10328 -34.09190 -32.62204 -32.07188 -30.98999 -29.35650 -28.94681 -27.59545 -27.36135 -25.34864 -23.64817 -23.09873 -22.00904 -21.31296 -20.60219 -19.66665 -19.27899 -17.96118 -17.54352 -16.90882 -16.86429 -16.44309 -16.06060 -15.92296 -15.61701 -15.24087 -15.07960 -14.87670 -14.58694 -14.45608 -14.25448 -14.01334 -13.84612 -13.52479 -13.46698 -13.43093 -13.33325 -13.18853 -13.03393 -12.95703 -12.79756 -12.63004 -12.37806 -12.20750 -11.98622 -11.85885 -11.68014 -11.44939 -11.12073 -10.99508 -10.95261 -10.65321 -10.28619 -10.00925 -9.25894 -8.62668 -8.00261 -5.30301 -0.53772 -0.04477 0.56155 1.34352 1.39973 1.45384 1.51658 1.73032 2.20583 2.33323 2.49454 3.32806 3.33813 3.66276 3.79164 3.98127 4.04845 4.08273 4.21054 4.33646 4.35177 4.43945 4.52760 4.64103 4.65861 4.66677 4.69439 4.76008 4.77273 4.81479 4.83737 4.89835 4.92117 5.01109 5.08501 5.20397 5.25374 5.33362 5.39500 5.60985 5.62644 5.63824 5.79411 5.80649 6.24462 6.53844 6.76636 7.12484 7.28287 7.90940 8.07302 9.22180 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.003434 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.670297 B = 8152.267117 C = 8459.578144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.194 3.806 3 N -0.575 5.575 4 C 0.317 3.683 5 N -0.575 5.575 6 C 0.094 3.906 7 C 0.080 3.920 8 S 0.181 5.819 9 C -0.383 4.383 10 C 0.599 3.401 11 O -0.572 6.572 12 N -0.705 5.705 13 C 0.142 3.858 14 H 0.052 0.948 15 C -0.151 4.151 16 C -0.122 4.122 17 C 0.166 3.834 18 H 0.037 0.963 19 C -0.156 4.156 20 N -0.748 5.748 21 C -0.213 4.213 22 H 0.051 0.949 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.950 3.050 26 H -0.274 1.274 27 H -0.303 1.303 28 H -0.255 1.255 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.025 0.975 46 H 0.053 0.947 47 H 0.362 0.638 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.846 11.055 -20.424 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 N -0.302 5.302 4 C -0.051 4.051 5 N -0.291 5.291 6 C -0.050 4.050 7 C -0.061 4.061 8 S 0.432 5.568 9 C -0.509 4.509 10 C 0.387 3.613 11 O -0.454 6.454 12 N -0.356 5.356 13 C 0.038 3.962 14 H 0.070 0.930 15 C -0.209 4.209 16 C -0.160 4.160 17 C 0.059 3.941 18 H 0.055 0.945 19 C -0.216 4.216 20 N -0.391 5.391 21 C -0.345 4.345 22 H 0.069 0.931 23 C -0.259 4.259 24 N -0.640 5.640 25 Si 0.778 3.222 26 H -0.200 1.200 27 H -0.231 1.231 28 H -0.180 1.180 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.239 0.761 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.196 0.804 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.049 11.197 -20.271 28.176 hybrid contribution -1.893 -0.303 0.679 2.034 sum 14.156 10.894 -19.593 26.513 Atomic orbital electron populations 1.20569 0.86423 1.04196 1.03183 1.20659 0.98217 0.84956 0.90788 1.66045 1.03171 1.31321 1.29673 1.24083 0.91035 0.94117 0.95846 1.46194 1.04803 1.03426 1.74725 1.21881 1.01457 0.79038 1.02576 1.22243 0.75869 1.02822 1.05189 1.83046 1.03706 0.97182 1.72857 1.25031 0.96956 0.97901 1.31053 1.16781 0.85814 0.83421 0.75325 1.90749 1.16150 1.85708 1.52757 1.45722 1.09281 1.05610 1.74988 1.20982 0.97773 0.80313 0.97174 0.92958 1.22095 1.02334 1.01641 0.94867 1.22160 0.99952 0.99507 0.94367 1.20500 0.85764 0.97190 0.90660 0.94480 1.22273 0.98895 1.00305 1.00098 1.42803 1.21770 1.48578 1.25997 1.18946 1.02079 1.15216 0.98212 0.93111 1.25426 1.00242 1.02440 0.97745 1.69881 1.27251 1.47393 1.19464 0.85474 0.78326 0.79390 0.79020 1.20006 1.23073 1.17986 0.91060 0.89235 0.89582 0.92451 0.87413 0.91631 0.90801 0.88110 0.89073 0.76126 0.94271 0.90079 0.90426 0.87221 0.89105 0.90242 0.95573 0.92770 0.80445 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 9.71 71.24 0.69 -2.04 16 2 C 0.19 6.46 6.83 42.34 0.29 6.75 16 3 N -0.58 -17.21 9.71 -188.53 -1.83 -19.05 16 4 C 0.32 7.68 7.72 179.43 1.38 9.06 16 5 N -0.57 -9.30 3.36 -761.40 -2.56 -11.86 16 6 C 0.09 1.18 10.59 127.77 1.35 2.54 16 7 C 0.08 0.63 10.70 127.77 1.37 2.00 16 8 S 0.18 4.16 20.44 -56.49 -1.15 3.01 16 9 C -0.38 -12.65 6.49 23.99 0.16 -12.49 16 10 C 0.60 22.35 7.73 86.32 0.67 23.02 16 11 O -0.57 -25.64 13.96 -4.52 -0.06 -25.71 16 12 N -0.71 -21.72 4.44 -446.92 -1.99 -23.71 16 13 C 0.14 4.38 2.52 44.99 0.11 4.50 16 14 H 0.05 2.17 7.05 -2.38 -0.02 2.16 16 15 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 16 C -0.12 -3.17 4.29 30.60 0.13 -3.03 16 17 C 0.17 5.94 2.84 44.99 0.13 6.07 16 18 H 0.04 1.45 7.56 -2.39 -0.02 1.43 16 19 C -0.16 -4.89 9.49 71.98 0.68 -4.20 16 20 N -0.75 -35.22 4.30 -322.93 -1.39 -36.61 16 21 C -0.21 -12.60 10.41 84.04 0.87 -11.73 16 22 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 23 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 24 N -0.99 -66.75 13.97 21.65 0.30 -66.45 16 25 Si 0.95 48.71 27.74 68.60 1.90 50.61 16 26 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 28 H -0.26 -12.04 6.51 99.48 0.65 -11.39 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.09 3.02 6.04 -2.39 -0.01 3.01 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 0.58 8.07 -2.39 -0.02 0.56 16 34 H 0.06 1.07 7.59 -2.39 -0.02 1.06 16 35 H 0.07 0.63 6.31 -2.39 -0.02 0.61 16 36 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.40 9.97 7.77 -92.71 -0.72 9.25 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.36 16.66 5.66 -92.71 -0.52 16.13 16 48 H 0.25 16.45 8.31 -92.71 -0.77 15.68 16 Total: -1.00 -85.29 401.20 1.88 -83.41 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.33 Total: 32.69 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 8.99 Total: 13.66 kcal Atomic # 7 Polarization: -150.21 SS G_CDS: -7.46 Total: -157.67 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.06 Total: -25.71 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.90 Total: 50.61 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.15 Total: 3.01 kcal Total: -85.29 1.88 -83.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135621985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.044 kcal (2) G-P(sol) polarization free energy of solvation -85.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds