Wall clock time and date at job start Tue Mar 31 2020 23:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30887 * 122.97806 * 2 1 4 4 C 1.30229 * 117.25763 * 179.97438 * 3 2 1 5 5 N 1.37845 * 124.74452 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99984 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.99954 * 180.02562 * 5 4 3 8 8 S 1.70919 * 110.50992 * 0.26685 * 4 3 2 9 9 C 1.36703 * 122.98851 * 179.97438 * 2 1 3 10 10 C 1.46218 * 126.11065 * 359.97438 * 9 2 1 11 11 O 1.21750 * 120.00307 * 0.02562 * 10 9 2 12 12 N 1.34783 * 119.99996 * 179.97438 * 10 9 2 13 13 C 1.46502 * 120.00132 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46604 * 35.00700 * 13 12 10 15 15 C 1.53000 * 109.47463 * 275.00520 * 13 12 10 16 16 C 1.52996 * 109.47072 * 155.00127 * 13 12 10 17 17 C 1.53002 * 109.47029 * 295.00184 * 16 13 12 18 18 H 1.08999 * 109.47434 * 304.99863 * 17 16 13 19 19 C 1.53003 * 109.46783 * 184.99749 * 17 16 13 20 20 N 1.46503 * 109.47185 * 65.00395 * 17 16 13 21 21 C 1.36936 * 119.99974 * 204.99700 * 20 17 16 22 22 H 1.08005 * 119.99771 * 359.97438 * 21 20 17 23 23 C 1.38808 * 120.00110 * 179.97438 * 21 20 17 24 24 N 1.31621 * 119.99895 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00126 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47426 * 120.00052 * 25 23 21 28 28 H 1.48503 * 109.47100 * 239.99894 * 25 23 21 29 29 H 1.08999 * 109.47164 * 90.03360 * 1 2 3 30 30 H 1.09008 * 109.46616 * 210.02613 * 1 2 3 31 31 H 1.08998 * 109.47640 * 330.01990 * 1 2 3 32 32 H 1.09002 * 109.47391 * 270.00059 * 6 5 4 33 33 H 1.09001 * 109.46813 * 150.00115 * 6 5 4 34 34 H 1.09004 * 109.47041 * 30.00242 * 6 5 4 35 35 H 1.09001 * 109.47274 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47166 * 300.00227 * 7 5 4 37 37 H 1.09004 * 109.47230 * 60.00178 * 7 5 4 38 38 H 0.97001 * 119.99941 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47164 * 59.99693 * 15 13 12 40 40 H 1.08995 * 109.46966 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.46706 * 300.00097 * 15 13 12 42 42 H 1.09005 * 109.47144 * 55.00366 * 16 13 12 43 43 H 1.09005 * 109.47206 * 175.00473 * 16 13 12 44 44 H 1.08999 * 109.47229 * 300.00240 * 19 17 16 45 45 H 1.09003 * 109.47233 * 60.00647 * 19 17 16 46 46 H 1.08999 * 109.47085 * 179.97438 * 19 17 16 47 47 H 0.97001 * 119.99513 * 24.99257 * 20 17 16 48 48 H 0.96998 * 120.00097 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0980 0.0000 4 6 3.5153 0.9682 0.0005 5 7 4.4099 2.0169 0.0001 6 6 3.9200 3.3976 -0.0005 7 6 5.8505 1.7508 0.0002 8 16 3.9516 -0.6844 -0.0064 9 6 2.2513 -1.1466 0.0005 10 6 1.7297 -2.5126 0.0017 11 8 0.5275 -2.7052 0.0018 12 7 2.5797 -3.5586 0.0015 13 6 2.0571 -4.9272 0.0032 14 1 1.1404 -4.9668 -0.5853 15 6 1.7592 -5.3577 1.4409 16 6 3.0958 -5.8705 -0.6068 17 6 3.3016 -5.5176 -2.0812 18 1 2.3414 -5.5366 -2.5968 19 6 4.2452 -6.5370 -2.7227 20 7 3.8858 -4.1782 -2.1859 21 6 3.7010 -3.4375 -3.3227 22 1 3.1249 -3.8410 -4.1424 23 6 4.2540 -2.1682 -3.4217 24 7 4.9565 -1.6767 -2.4230 25 14 4.0014 -1.1576 -4.9722 26 1 3.1805 -1.9305 -5.9386 27 1 3.3025 0.1073 -4.6303 28 1 5.3199 -0.8458 -5.5801 29 1 -0.3633 -0.0006 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8901 0.5135 32 1 3.7984 3.7396 -1.0282 33 1 4.6373 4.0378 0.5131 34 1 2.9597 3.4426 0.5134 35 1 6.3945 2.6954 -0.0007 36 1 6.1145 1.1798 0.8904 37 1 6.1145 1.1792 -0.8896 38 1 3.5375 -3.4052 0.0011 39 1 1.0192 -4.6857 1.8755 40 1 1.3700 -6.3758 1.4420 41 1 2.6759 -5.3180 2.0293 42 1 4.0402 -5.7653 -0.0727 43 1 2.7448 -6.8993 -0.5250 44 1 5.2053 -6.5180 -2.2071 45 1 3.8106 -7.5336 -2.6449 46 1 4.3915 -6.2859 -3.7732 47 1 4.4034 -3.8160 -1.4498 48 1 5.3426 -0.7896 -2.4919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135621987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:35 Heat of formation + Delta-G solvation = 29.294885 kcal Electronic energy + Delta-G solvation = -29481.289074 eV Core-core repulsion = 25698.809664 eV Total energy + Delta-G solvation = -3782.479409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.45332 -38.66802 -36.82821 -36.10078 -34.14635 -32.32112 -30.85260 -30.38069 -28.65807 -28.11654 -27.16664 -26.30352 -25.81236 -23.77365 -21.98831 -21.46827 -20.25374 -19.99959 -18.56091 -17.55809 -17.28426 -16.18869 -15.89577 -15.30595 -15.18671 -14.72482 -14.36281 -14.23115 -13.88467 -13.71816 -13.42932 -13.17476 -12.83320 -12.66092 -12.59922 -12.52727 -12.40114 -12.13915 -11.97222 -11.86554 -11.81424 -11.78304 -11.67238 -11.61782 -11.04103 -10.88764 -10.78329 -10.38244 -10.30835 -10.25862 -9.93808 -9.78490 -9.30026 -9.21536 -9.09035 -8.73963 -8.29207 -8.20276 -7.03905 -6.76199 -5.88895 -3.08671 1.39140 1.98762 2.64780 3.29452 3.36602 3.40325 3.44720 3.47431 3.94528 4.19932 4.52174 4.97625 5.11958 5.27667 5.39164 5.41510 5.46670 5.47700 5.53354 5.70481 5.71391 5.80291 5.84415 5.89095 5.92646 5.96328 6.00769 6.04128 6.14673 6.22724 6.29914 6.35946 6.37334 6.45575 6.54528 6.56736 6.61534 6.82333 6.88206 7.02224 7.11262 7.28651 7.50056 7.59689 8.24819 8.31879 8.66024 9.07296 9.38683 9.92139 10.27536 11.27541 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.005749 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.692370 B = 4868.986258 C = 6286.090664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.166 3.834 3 N -0.560 5.560 4 C 0.249 3.751 5 N -0.590 5.590 6 C 0.107 3.893 7 C 0.093 3.907 8 S 0.289 5.711 9 C -0.358 4.358 10 C 0.617 3.383 11 O -0.561 6.561 12 N -0.700 5.700 13 C 0.151 3.849 14 H 0.084 0.916 15 C -0.162 4.162 16 C -0.134 4.134 17 C 0.167 3.833 18 H 0.050 0.950 19 C -0.162 4.162 20 N -0.714 5.714 21 C -0.202 4.202 22 H 0.070 0.930 23 C -0.018 4.018 24 N -0.906 5.906 25 Si 0.899 3.101 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.398 0.602 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.036 0.964 46 H 0.052 0.948 47 H 0.378 0.622 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 0.805 8.619 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.022 3.978 3 N -0.286 5.286 4 C -0.114 4.114 5 N -0.311 5.311 6 C -0.038 4.038 7 C -0.050 4.050 8 S 0.546 5.454 9 C -0.486 4.486 10 C 0.405 3.595 11 O -0.443 6.443 12 N -0.353 5.353 13 C 0.046 3.954 14 H 0.102 0.898 15 C -0.220 4.220 16 C -0.173 4.173 17 C 0.058 3.942 18 H 0.068 0.932 19 C -0.222 4.222 20 N -0.356 5.356 21 C -0.334 4.334 22 H 0.088 0.912 23 C -0.213 4.213 24 N -0.556 5.556 25 Si 0.731 3.269 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.213 0.787 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.725 0.798 8.411 8.623 hybrid contribution -0.218 1.023 -1.101 1.518 sum 1.507 1.821 7.310 7.683 Atomic orbital electron populations 1.20444 0.87604 1.02942 1.02627 1.20098 0.96964 0.84864 0.95870 1.65849 1.02811 1.32174 1.27719 1.23993 0.91095 0.94857 1.01501 1.45288 1.03458 1.02924 1.79474 1.21547 1.00389 0.80800 1.01074 1.21764 0.78547 1.02272 1.02445 1.84605 1.03387 0.94394 1.63023 1.25019 0.96489 0.98052 1.29030 1.16440 0.85573 0.82729 0.74736 1.90663 1.14830 1.85567 1.53279 1.45839 1.09626 1.04910 1.74875 1.20773 0.97781 0.81366 0.95446 0.89820 1.22210 1.01561 1.01036 0.97242 1.22213 0.98741 0.98608 0.97696 1.20325 0.95414 0.86296 0.92178 0.93245 1.22401 1.00256 0.97918 1.01675 1.42535 1.62028 1.12737 1.18316 1.19368 1.24523 0.95920 0.93577 0.91216 1.24486 1.01703 0.97326 0.97785 1.69318 1.39002 1.17685 1.29554 0.86197 0.77123 0.80501 0.83036 1.20727 1.22031 1.22011 0.91315 0.88841 0.92226 0.93785 0.92000 0.90687 0.90177 0.92411 0.91441 0.76487 0.92272 0.92222 0.92931 0.91831 0.90735 0.93573 0.94478 0.92874 0.78741 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.71 36.01 0.35 -1.10 16 2 C 0.17 3.54 6.83 -83.55 -0.57 2.96 16 3 N -0.56 -11.66 9.71 -10.94 -0.11 -11.77 16 4 C 0.25 4.82 7.72 -87.98 -0.68 4.15 16 5 N -0.59 -9.36 3.36 -192.00 -0.64 -10.00 16 6 C 0.11 1.41 10.51 59.85 0.63 2.04 16 7 C 0.09 1.17 9.98 59.85 0.60 1.77 16 8 S 0.29 5.63 18.49 -107.50 -1.99 3.64 16 9 C -0.36 -7.69 6.49 -36.93 -0.24 -7.92 16 10 C 0.62 13.25 7.73 -13.05 -0.10 13.15 16 11 O -0.56 -12.85 13.96 5.14 0.07 -12.78 16 12 N -0.70 -13.24 3.79 -55.25 -0.21 -13.45 16 13 C 0.15 2.49 2.57 -67.93 -0.17 2.32 16 14 H 0.08 1.55 7.57 -51.93 -0.39 1.16 16 15 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 16 C -0.13 -2.00 4.43 -26.73 -0.12 -2.11 16 17 C 0.17 3.04 2.89 -67.93 -0.20 2.84 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 20 N -0.71 -15.59 3.84 -53.42 -0.21 -15.80 16 21 C -0.20 -5.10 9.93 -15.06 -0.15 -5.25 16 22 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 23 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 24 N -0.91 -22.50 10.19 55.49 0.57 -21.94 16 25 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.79 6.04 -51.92 -0.31 1.47 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 34 H 0.07 1.06 7.59 -51.93 -0.39 0.67 16 35 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.40 7.59 5.68 -40.82 -0.23 7.35 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.38 8.42 5.71 -40.82 -0.23 8.19 16 48 H 0.25 6.29 8.21 -40.82 -0.34 5.96 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -29.46 395.75 -9.46 -38.92 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -7.84 Total: 12.27 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.04 Total: 8.06 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -0.60 Total: -72.96 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.99 Total: 3.64 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.46 -9.46 -38.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135621987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.211 kcal (2) G-P(sol) polarization free energy of solvation -29.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds