Wall clock time and date at job start Tue Mar 31 2020 23:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30887 * 122.97806 * 2 1 4 4 C 1.30229 * 117.25763 * 179.97438 * 3 2 1 5 5 N 1.37845 * 124.74452 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99984 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.99954 * 180.02562 * 5 4 3 8 8 S 1.70919 * 110.50992 * 0.26685 * 4 3 2 9 9 C 1.36703 * 122.98851 * 179.97438 * 2 1 3 10 10 C 1.46218 * 126.11065 * 359.97438 * 9 2 1 11 11 O 1.21750 * 120.00307 * 0.02562 * 10 9 2 12 12 N 1.34783 * 119.99996 * 179.97438 * 10 9 2 13 13 C 1.46502 * 120.00132 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46604 * 35.00700 * 13 12 10 15 15 C 1.53000 * 109.47463 * 275.00520 * 13 12 10 16 16 C 1.52996 * 109.47072 * 155.00127 * 13 12 10 17 17 C 1.53002 * 109.47029 * 295.00184 * 16 13 12 18 18 H 1.08999 * 109.47434 * 304.99863 * 17 16 13 19 19 C 1.53003 * 109.46783 * 184.99749 * 17 16 13 20 20 N 1.46503 * 109.47185 * 65.00395 * 17 16 13 21 21 C 1.36936 * 119.99974 * 204.99700 * 20 17 16 22 22 H 1.08005 * 119.99771 * 359.97438 * 21 20 17 23 23 C 1.38808 * 120.00110 * 179.97438 * 21 20 17 24 24 N 1.31621 * 119.99895 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00126 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47426 * 120.00052 * 25 23 21 28 28 H 1.48503 * 109.47100 * 239.99894 * 25 23 21 29 29 H 1.08999 * 109.47164 * 90.03360 * 1 2 3 30 30 H 1.09008 * 109.46616 * 210.02613 * 1 2 3 31 31 H 1.08998 * 109.47640 * 330.01990 * 1 2 3 32 32 H 1.09002 * 109.47391 * 270.00059 * 6 5 4 33 33 H 1.09001 * 109.46813 * 150.00115 * 6 5 4 34 34 H 1.09004 * 109.47041 * 30.00242 * 6 5 4 35 35 H 1.09001 * 109.47274 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47166 * 300.00227 * 7 5 4 37 37 H 1.09004 * 109.47230 * 60.00178 * 7 5 4 38 38 H 0.97001 * 119.99941 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.47164 * 59.99693 * 15 13 12 40 40 H 1.08995 * 109.46966 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.46706 * 300.00097 * 15 13 12 42 42 H 1.09005 * 109.47144 * 55.00366 * 16 13 12 43 43 H 1.09005 * 109.47206 * 175.00473 * 16 13 12 44 44 H 1.08999 * 109.47229 * 300.00240 * 19 17 16 45 45 H 1.09003 * 109.47233 * 60.00647 * 19 17 16 46 46 H 1.08999 * 109.47085 * 179.97438 * 19 17 16 47 47 H 0.97001 * 119.99513 * 24.99257 * 20 17 16 48 48 H 0.96998 * 120.00097 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0980 0.0000 4 6 3.5153 0.9682 0.0005 5 7 4.4099 2.0169 0.0001 6 6 3.9200 3.3976 -0.0005 7 6 5.8505 1.7508 0.0002 8 16 3.9516 -0.6844 -0.0064 9 6 2.2513 -1.1466 0.0005 10 6 1.7297 -2.5126 0.0017 11 8 0.5275 -2.7052 0.0018 12 7 2.5797 -3.5586 0.0015 13 6 2.0571 -4.9272 0.0032 14 1 1.1404 -4.9668 -0.5853 15 6 1.7592 -5.3577 1.4409 16 6 3.0958 -5.8705 -0.6068 17 6 3.3016 -5.5176 -2.0812 18 1 2.3414 -5.5366 -2.5968 19 6 4.2452 -6.5370 -2.7227 20 7 3.8858 -4.1782 -2.1859 21 6 3.7010 -3.4375 -3.3227 22 1 3.1249 -3.8410 -4.1424 23 6 4.2540 -2.1682 -3.4217 24 7 4.9565 -1.6767 -2.4230 25 14 4.0014 -1.1576 -4.9722 26 1 3.1805 -1.9305 -5.9386 27 1 3.3025 0.1073 -4.6303 28 1 5.3199 -0.8458 -5.5801 29 1 -0.3633 -0.0006 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3634 0.8901 0.5135 32 1 3.7984 3.7396 -1.0282 33 1 4.6373 4.0378 0.5131 34 1 2.9597 3.4426 0.5134 35 1 6.3945 2.6954 -0.0007 36 1 6.1145 1.1798 0.8904 37 1 6.1145 1.1792 -0.8896 38 1 3.5375 -3.4052 0.0011 39 1 1.0192 -4.6857 1.8755 40 1 1.3700 -6.3758 1.4420 41 1 2.6759 -5.3180 2.0293 42 1 4.0402 -5.7653 -0.0727 43 1 2.7448 -6.8993 -0.5250 44 1 5.2053 -6.5180 -2.2071 45 1 3.8106 -7.5336 -2.6449 46 1 4.3915 -6.2859 -3.7732 47 1 4.4034 -3.8160 -1.4498 48 1 5.3426 -0.7896 -2.4919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135621987.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:34 Heat of formation + Delta-G solvation = 12.293006 kcal Electronic energy + Delta-G solvation = -29482.026331 eV Core-core repulsion = 25698.809664 eV Total energy + Delta-G solvation = -3783.216666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01320 -40.16810 -38.29788 -37.48045 -35.74443 -34.01830 -32.37611 -31.86847 -30.28101 -29.19199 -28.67533 -27.55618 -27.12500 -25.58251 -23.44978 -22.84444 -21.70799 -21.48499 -20.08666 -19.15017 -18.97174 -17.66258 -17.37443 -16.75491 -16.67597 -16.34092 -15.82001 -15.59320 -15.52564 -15.36397 -14.85267 -14.72032 -14.27973 -14.13483 -14.10146 -13.62943 -13.55688 -13.51329 -13.32936 -13.29701 -13.23245 -13.08372 -12.90477 -12.84296 -12.79166 -12.59890 -12.28727 -12.15119 -11.87884 -11.70088 -11.58461 -11.39356 -10.96438 -10.85401 -10.67998 -10.33208 -9.81518 -9.77404 -8.72861 -8.28761 -7.79914 -4.99655 -0.17214 0.47811 1.07751 1.38365 1.45665 1.46872 1.79365 2.02469 2.42230 2.57542 2.63600 3.50418 3.64896 3.82787 4.01865 4.19670 4.20874 4.29307 4.38858 4.41759 4.44586 4.47495 4.59647 4.68893 4.71863 4.77668 4.82935 4.85092 4.86258 4.89572 4.92334 4.94380 5.03833 5.10949 5.16230 5.19436 5.38874 5.41841 5.44938 5.61321 5.65498 5.83908 5.87638 6.11150 6.37261 6.74087 7.09496 7.45713 7.47679 8.16280 8.44215 9.33212 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.005749 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.692370 B = 4868.986258 C = 6286.090664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.155 3.845 3 N -0.578 5.578 4 C 0.249 3.751 5 N -0.586 5.586 6 C 0.102 3.898 7 C 0.085 3.915 8 S 0.298 5.702 9 C -0.388 4.388 10 C 0.608 3.392 11 O -0.586 6.586 12 N -0.693 5.693 13 C 0.146 3.854 14 H 0.058 0.942 15 C -0.151 4.151 16 C -0.120 4.120 17 C 0.160 3.840 18 H 0.029 0.971 19 C -0.152 4.152 20 N -0.717 5.717 21 C -0.214 4.214 22 H 0.054 0.946 23 C -0.046 4.046 24 N -0.906 5.906 25 Si 0.930 3.070 26 H -0.285 1.285 27 H -0.315 1.315 28 H -0.290 1.290 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.397 0.603 39 H 0.038 0.962 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.029 0.971 47 H 0.375 0.625 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 0.566 10.082 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.010 3.990 3 N -0.304 5.304 4 C -0.116 4.116 5 N -0.306 5.306 6 C -0.042 4.042 7 C -0.057 4.057 8 S 0.554 5.446 9 C -0.516 4.516 10 C 0.397 3.603 11 O -0.470 6.470 12 N -0.344 5.344 13 C 0.042 3.958 14 H 0.076 0.924 15 C -0.210 4.210 16 C -0.158 4.158 17 C 0.052 3.948 18 H 0.047 0.953 19 C -0.212 4.212 20 N -0.359 5.359 21 C -0.346 4.346 22 H 0.072 0.928 23 C -0.241 4.241 24 N -0.556 5.556 25 Si 0.764 3.236 26 H -0.211 1.211 27 H -0.244 1.244 28 H -0.217 1.217 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.235 0.765 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.107 0.544 9.879 10.371 hybrid contribution -0.629 1.239 -1.491 2.038 sum 2.478 1.783 8.388 8.926 Atomic orbital electron populations 1.20405 0.86502 1.03633 1.02417 1.20540 0.98093 0.85145 0.95204 1.65927 1.03412 1.31976 1.29131 1.24362 0.91360 0.95839 1.00001 1.45807 1.04286 1.03136 1.77406 1.21757 1.01208 0.79795 1.01434 1.22048 0.76877 1.04620 1.02179 1.84351 1.02125 0.94401 1.63695 1.25214 0.97729 0.98361 1.30256 1.16608 0.85578 0.83363 0.74789 1.90631 1.15693 1.86001 1.54662 1.45875 1.09244 1.05512 1.73764 1.20975 0.97211 0.80507 0.97145 0.92363 1.22110 1.01819 1.02035 0.95001 1.22142 0.98883 0.99913 0.94903 1.20516 0.94563 0.85115 0.94583 0.95324 1.22247 1.00118 0.98886 0.99902 1.42527 1.62296 1.13957 1.17157 1.19303 1.24517 0.96416 0.94403 0.92842 1.24780 1.02536 0.97990 0.98751 1.69395 1.39395 1.17330 1.29527 0.85730 0.76638 0.78895 0.82371 1.21060 1.24429 1.21736 0.91845 0.89499 0.90098 0.93956 0.87655 0.91910 0.86083 0.91194 0.93083 0.76548 0.94235 0.89373 0.91461 0.90589 0.87105 0.93193 0.91277 0.95203 0.79072 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.69 9.71 71.24 0.69 -2.00 16 2 C 0.15 6.67 6.83 42.34 0.29 6.96 16 3 N -0.58 -24.02 9.71 -188.52 -1.83 -25.85 16 4 C 0.25 9.49 7.72 179.42 1.38 10.88 16 5 N -0.59 -17.47 3.36 -761.36 -2.56 -20.03 16 6 C 0.10 2.43 10.51 127.77 1.34 3.78 16 7 C 0.08 1.92 9.98 127.77 1.27 3.19 16 8 S 0.30 11.60 18.49 -56.49 -1.04 10.55 16 9 C -0.39 -16.96 6.49 23.98 0.16 -16.80 16 10 C 0.61 26.72 7.73 86.31 0.67 27.39 16 11 O -0.59 -27.63 13.96 -4.51 -0.06 -27.70 16 12 N -0.69 -26.27 3.79 -446.91 -1.70 -27.97 16 13 C 0.15 4.66 2.57 44.99 0.12 4.78 16 14 H 0.06 2.17 7.57 -2.39 -0.02 2.16 16 15 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 16 C -0.12 -3.29 4.43 30.59 0.14 -3.15 16 17 C 0.16 5.70 2.89 44.99 0.13 5.83 16 18 H 0.03 1.13 8.08 -2.39 -0.02 1.12 16 19 C -0.15 -4.76 9.49 71.98 0.68 -4.08 16 20 N -0.72 -31.42 3.84 -322.93 -1.24 -32.66 16 21 C -0.21 -10.99 9.93 84.03 0.83 -10.16 16 22 H 0.05 2.87 7.83 -2.91 -0.02 2.84 16 23 C -0.05 -2.40 5.50 84.86 0.47 -1.93 16 24 N -0.91 -45.31 10.19 21.65 0.22 -45.09 16 25 Si 0.93 45.74 29.55 68.60 2.03 47.77 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.32 -16.56 7.11 99.48 0.71 -15.86 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.09 3.42 6.04 -2.38 -0.01 3.40 16 31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.61 7.92 -2.39 -0.02 1.59 16 34 H 0.06 1.67 7.59 -2.38 -0.02 1.65 16 35 H 0.12 1.75 7.79 -2.39 -0.02 1.73 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.40 15.10 5.68 -92.71 -0.53 14.57 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.37 16.66 5.71 -92.71 -0.53 16.13 16 48 H 0.25 12.43 8.21 -92.71 -0.76 11.67 16 Total: -1.00 -65.98 395.75 2.59 -63.39 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.08 Total: 36.09 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 8.85 Total: 21.48 kcal Atomic # 7 Polarization: -144.49 SS G_CDS: -7.10 Total: -151.59 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 11.60 SS G_CDS: -1.04 Total: 10.55 kcal Total: -65.98 2.59 -63.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135621987.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.680 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds