Wall clock time and date at job start Tue Mar 31 2020 22:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38683 * 119.27726 * 2 1 4 4 C 1.38001 * 119.62696 * 179.97438 * 3 2 1 5 5 C 1.41003 * 118.28470 * 359.75256 * 4 3 2 6 6 C 1.41021 * 120.70821 * 180.24728 * 5 4 3 7 7 H 1.08003 * 119.99729 * 207.43621 * 6 5 4 8 8 C 1.39949 * 120.00161 * 27.43883 * 6 5 4 9 9 N 1.30868 * 119.99871 * 12.16694 * 8 6 5 10 10 Si 1.86799 * 119.99899 * 192.16619 * 8 6 5 11 11 H 1.48505 * 109.46793 * 90.00084 * 10 8 6 12 12 H 1.48494 * 109.46874 * 209.99822 * 10 8 6 13 13 H 1.48494 * 109.47120 * 330.00021 * 10 8 6 14 14 C 1.41711 * 118.58658 * 0.48696 * 5 4 3 15 15 N 1.38088 * 119.90713 * 179.78192 * 14 5 4 16 16 C 1.47903 * 111.00464 * 75.73837 * 15 14 5 17 17 C 1.53990 * 107.06056 * 145.84257 * 16 15 14 18 18 C 1.54600 * 105.13851 * 358.77917 * 17 16 15 19 19 H 1.09003 * 110.72010 * 96.57321 * 18 17 16 20 20 O 1.42896 * 110.72573 * 219.67935 * 18 17 16 21 21 C 1.35513 * 117.00368 * 268.55248 * 20 18 17 22 22 N 1.32823 * 120.50982 * 359.97438 * 21 20 18 23 23 C 1.31768 * 120.71609 * 180.02562 * 22 21 20 24 24 N 1.31784 * 121.81595 * 0.02959 * 23 22 21 25 25 C 1.32493 * 120.96478 * 359.96863 * 24 23 22 26 26 C 1.38226 * 119.17395 * 0.02562 * 25 24 23 27 27 C 1.50698 * 120.82317 * 179.97438 * 26 25 24 28 28 C 1.48531 * 111.00056 * 193.13984 * 15 14 5 29 29 N 1.31970 * 119.27872 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47682 * 270.01961 * 1 2 3 31 31 H 1.09004 * 109.47357 * 30.02559 * 1 2 3 32 32 H 1.09007 * 109.47156 * 150.02190 * 1 2 3 33 33 H 1.07998 * 120.18197 * 359.95566 * 3 2 1 34 34 H 1.08007 * 120.85993 * 180.02562 * 4 3 2 35 35 H 0.96996 * 119.99876 * 179.97438 * 9 8 6 36 36 H 1.09010 * 109.91227 * 26.49318 * 16 15 14 37 37 H 1.08998 * 109.92170 * 265.20327 * 16 15 14 38 38 H 1.08997 * 110.31509 * 239.86183 * 17 16 15 39 39 H 1.08996 * 110.39207 * 117.73431 * 17 16 15 40 40 H 1.08004 * 119.08807 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.41088 * 179.97438 * 25 24 23 42 42 H 1.09005 * 109.47371 * 89.99687 * 27 26 25 43 43 H 1.09006 * 109.47210 * 209.99641 * 27 26 25 44 44 H 1.09004 * 109.47401 * 329.99859 * 27 26 25 45 45 H 1.08990 * 110.67006 * 81.84060 * 28 15 14 46 46 H 1.09006 * 110.66655 * 318.70928 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5651 1.2181 0.0005 5 6 4.2408 -0.0195 0.0064 6 6 5.6501 -0.0705 0.0125 7 1 6.1615 -0.9207 -0.4142 8 6 6.3860 0.9805 0.5715 9 7 5.7831 1.8891 1.2951 10 14 8.2288 1.0864 0.2847 11 1 8.4941 1.8820 -0.9408 12 1 8.8742 1.7425 1.4501 13 1 8.7830 -0.2810 0.1168 14 6 3.4737 -1.2109 0.0009 15 7 4.1073 -2.4378 0.0019 16 6 4.6466 -2.7549 1.3422 17 6 4.5268 -4.2788 1.5284 18 6 3.8619 -4.7931 0.2309 19 1 4.6138 -5.1536 -0.4711 20 8 2.9115 -5.8196 0.5223 21 6 3.3614 -7.0977 0.5048 22 7 4.6331 -7.3611 0.2262 23 6 5.0749 -8.6024 0.2076 24 7 4.2836 -9.6253 0.4611 25 6 3.0030 -9.4421 0.7472 26 6 2.4968 -8.1562 0.7779 27 6 1.0459 -7.9051 1.0986 28 6 3.1533 -3.5299 -0.3195 29 7 2.1523 -1.1511 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6363 2.1398 -0.0007 34 1 4.1135 2.1486 0.0010 35 1 6.2932 2.6173 1.6828 36 1 4.0652 -2.2405 2.1075 37 1 5.6926 -2.4545 1.4022 38 1 3.9002 -4.5066 2.3906 39 1 5.5137 -4.7252 1.6503 40 1 6.1139 -8.7866 -0.0226 41 1 2.3625 -10.2869 0.9531 42 1 0.9285 -7.7769 2.1747 43 1 0.7115 -7.0027 0.5866 44 1 0.4481 -8.7539 0.7665 45 1 3.0078 -3.6090 -1.3967 46 1 2.2016 -3.3710 0.1876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158284167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:52 Heat of formation + Delta-G solvation = 51.151069 kcal Electronic energy + Delta-G solvation = -29223.681971 eV Core-core repulsion = 25306.706365 eV Total energy + Delta-G solvation = -3916.975606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36498 -39.63894 -38.51188 -36.71643 -34.26482 -34.00011 -33.02587 -31.77535 -30.83557 -28.84280 -28.44829 -27.69296 -27.46674 -24.54274 -24.00135 -23.06355 -22.14274 -21.23714 -20.32485 -20.01109 -18.70157 -17.90654 -17.32284 -16.22027 -16.02439 -15.64721 -15.44347 -14.76115 -14.66430 -14.56626 -14.08783 -13.88778 -13.70669 -13.51118 -13.38423 -13.15067 -12.99736 -12.64176 -12.52599 -12.39493 -12.26494 -11.84565 -11.52169 -11.45757 -11.33894 -11.13954 -11.03517 -10.95494 -10.93551 -10.88015 -10.53185 -10.26059 -10.19897 -9.85621 -9.45516 -9.38546 -8.93680 -8.62718 -8.11885 -8.02856 -7.13202 -6.79551 -4.43177 0.76141 1.03530 2.53393 2.79751 2.85008 3.02662 3.06736 3.14097 3.62779 3.85648 3.91705 4.04629 4.48684 4.54619 4.70546 4.73628 4.91902 4.97300 5.03806 5.27354 5.34639 5.44272 5.50639 5.61960 5.64790 5.71936 5.84877 5.89224 6.04831 6.06721 6.12427 6.23815 6.28381 6.35909 6.42261 6.45417 6.50698 6.60771 6.76309 6.78956 6.86825 7.05149 7.07391 7.18107 7.42354 7.59501 7.71052 7.94339 7.96906 8.18293 8.53701 8.66638 8.82650 9.52485 10.06654 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003199 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.401267 B = 8751.320858 C =10699.041513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.002 3.998 3 C -0.155 4.155 4 C -0.127 4.127 5 C 0.080 3.920 6 C -0.428 4.428 7 H 0.091 0.909 8 C 0.069 3.931 9 N -0.797 5.797 10 Si 0.913 3.087 11 H -0.268 1.268 12 H -0.278 1.278 13 H -0.259 1.259 14 C 0.164 3.836 15 N -0.429 5.429 16 C 0.055 3.945 17 C -0.144 4.144 18 C 0.082 3.918 19 H 0.102 0.898 20 O -0.285 6.285 21 C 0.370 3.630 22 N -0.568 5.568 23 C 0.326 3.674 24 N -0.547 5.547 25 C 0.166 3.834 26 C -0.213 4.213 27 C -0.097 4.097 28 C 0.053 3.947 29 N -0.493 5.493 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.282 0.718 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.198 0.802 41 H 0.170 0.830 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.686 -14.077 0.606 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.137 4.137 3 C -0.175 4.175 4 C -0.153 4.153 5 C 0.074 3.926 6 C -0.458 4.458 7 H 0.109 0.891 8 C -0.148 4.148 9 N -0.422 5.422 10 Si 0.737 3.263 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.183 1.183 14 C -0.069 4.069 15 N -0.150 5.150 16 C -0.072 4.072 17 C -0.182 4.182 18 C 0.025 3.975 19 H 0.120 0.880 20 O -0.188 6.188 21 C 0.182 3.818 22 N -0.297 5.297 23 C 0.038 3.962 24 N -0.265 5.265 25 C 0.004 3.996 26 C -0.218 4.218 27 C -0.155 4.155 28 C -0.074 4.074 29 N -0.206 5.206 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.214 0.786 41 H 0.187 0.813 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.030 -14.565 0.226 14.879 hybrid contribution 0.148 1.270 0.719 1.467 sum -2.882 -13.295 0.945 13.637 Atomic orbital electron populations 1.20278 0.91689 1.00763 1.00363 1.20035 0.94499 0.88237 1.10962 1.21404 0.95404 0.96893 1.03845 1.21634 0.92282 0.98757 1.02629 1.17964 0.94101 0.89671 0.90862 1.19545 0.90835 1.03810 1.31584 0.89071 1.26024 1.01534 0.94400 0.92867 1.69793 1.38584 1.10771 1.23047 0.86218 0.81515 0.79817 0.78741 1.19258 1.20353 1.18292 1.19494 0.87209 0.89862 1.10357 1.61936 1.29130 0.99382 1.24581 1.22703 1.02147 0.92279 0.90031 1.22866 1.01242 0.96896 0.97202 1.23549 0.90602 0.85502 0.97800 0.88032 1.86285 1.38768 1.11283 1.82454 1.20043 0.88254 0.86188 0.87274 1.68152 1.14882 1.25713 1.20979 1.24691 1.00113 0.81832 0.89573 1.68405 1.05343 1.36110 1.16643 1.22959 0.91475 0.95030 0.90155 1.20849 0.99088 0.92813 1.09097 1.20520 0.89547 1.03155 1.02293 1.22949 0.96439 0.87069 1.00993 1.66658 1.09948 1.30081 1.13872 0.93291 0.92925 0.92746 0.88407 0.85249 0.90719 0.93536 0.89290 0.91247 0.90530 0.78594 0.81252 0.90934 0.90467 0.91178 0.90139 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.00 0.37 -0.94 16 2 C 0.00 0.04 6.79 -82.37 -0.56 -0.51 16 3 C -0.15 -3.55 9.69 -39.50 -0.38 -3.93 16 4 C -0.13 -3.18 8.77 -38.62 -0.34 -3.52 16 5 C 0.08 2.05 5.52 -106.47 -0.59 1.46 16 6 C -0.43 -10.70 7.76 -37.89 -0.29 -10.99 16 7 H 0.09 2.26 7.63 -52.48 -0.40 1.86 16 8 C 0.07 1.64 5.26 -17.32 -0.09 1.55 16 9 N -0.80 -19.51 10.87 55.55 0.60 -18.91 16 10 Si 0.91 17.99 29.58 -169.99 -5.03 12.96 16 11 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 12 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 13 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 14 C 0.16 3.98 5.83 -155.03 -0.90 3.07 16 15 N -0.43 -9.17 4.64 -168.72 -0.78 -9.96 16 16 C 0.06 1.08 6.00 -2.76 -0.02 1.06 16 17 C -0.14 -2.33 6.69 -25.37 -0.17 -2.50 16 18 C 0.08 1.33 3.27 -24.87 -0.08 1.25 16 19 H 0.10 1.66 7.16 -51.93 -0.37 1.29 16 20 O -0.29 -4.36 9.05 -18.23 -0.17 -4.52 16 21 C 0.37 5.10 7.50 -16.70 -0.13 4.98 16 22 N -0.57 -7.70 8.87 -14.64 -0.13 -7.83 16 23 C 0.33 3.69 12.28 -92.19 -1.13 2.56 16 24 N -0.55 -6.16 10.43 -14.65 -0.15 -6.32 16 25 C 0.17 1.63 11.00 -17.27 -0.19 1.44 16 26 C -0.21 -2.38 5.93 -104.20 -0.62 -2.99 16 27 C -0.10 -0.86 9.86 36.00 0.35 -0.51 16 28 C 0.05 1.01 5.86 -1.90 -0.01 1.00 16 29 N -0.49 -11.70 8.28 -8.11 -0.07 -11.77 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.13 3.31 6.27 -52.48 -0.33 2.98 16 35 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 36 H 0.05 0.99 7.75 -51.92 -0.40 0.59 16 37 H 0.09 1.77 7.73 -51.93 -0.40 1.37 16 38 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.20 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.78 7.63 -51.93 -0.40 0.39 16 44 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.08 1.58 6.97 -51.93 -0.36 1.22 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -28.41 379.79 -11.22 -39.63 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.44 Total: 8.51 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -4.78 Total: -7.52 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.53 Total: -54.77 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.17 Total: -4.52 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.41 -11.22 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158284167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.777 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds