Wall clock time and date at job start Tue Mar 31 2020 22:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38683 * 119.27726 * 2 1 4 4 C 1.38001 * 119.62696 * 179.97438 * 3 2 1 5 5 C 1.41003 * 118.28470 * 359.75256 * 4 3 2 6 6 C 1.41021 * 120.70821 * 180.24728 * 5 4 3 7 7 H 1.08003 * 119.99729 * 207.43621 * 6 5 4 8 8 C 1.39949 * 120.00161 * 27.43883 * 6 5 4 9 9 N 1.30868 * 119.99871 * 12.16694 * 8 6 5 10 10 Si 1.86799 * 119.99899 * 192.16619 * 8 6 5 11 11 H 1.48505 * 109.46793 * 90.00084 * 10 8 6 12 12 H 1.48494 * 109.46874 * 209.99822 * 10 8 6 13 13 H 1.48494 * 109.47120 * 330.00021 * 10 8 6 14 14 C 1.41711 * 118.58658 * 0.48696 * 5 4 3 15 15 N 1.38088 * 119.90713 * 179.78192 * 14 5 4 16 16 C 1.47903 * 111.00464 * 75.73837 * 15 14 5 17 17 C 1.53990 * 107.06056 * 145.84257 * 16 15 14 18 18 C 1.54600 * 105.13851 * 358.77917 * 17 16 15 19 19 H 1.09003 * 110.72010 * 96.57321 * 18 17 16 20 20 O 1.42896 * 110.72573 * 219.67935 * 18 17 16 21 21 C 1.35513 * 117.00368 * 268.55248 * 20 18 17 22 22 N 1.32823 * 120.50982 * 359.97438 * 21 20 18 23 23 C 1.31768 * 120.71609 * 180.02562 * 22 21 20 24 24 N 1.31784 * 121.81595 * 0.02959 * 23 22 21 25 25 C 1.32493 * 120.96478 * 359.96863 * 24 23 22 26 26 C 1.38226 * 119.17395 * 0.02562 * 25 24 23 27 27 C 1.50698 * 120.82317 * 179.97438 * 26 25 24 28 28 C 1.48531 * 111.00056 * 193.13984 * 15 14 5 29 29 N 1.31970 * 119.27872 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.47682 * 270.01961 * 1 2 3 31 31 H 1.09004 * 109.47357 * 30.02559 * 1 2 3 32 32 H 1.09007 * 109.47156 * 150.02190 * 1 2 3 33 33 H 1.07998 * 120.18197 * 359.95566 * 3 2 1 34 34 H 1.08007 * 120.85993 * 180.02562 * 4 3 2 35 35 H 0.96996 * 119.99876 * 179.97438 * 9 8 6 36 36 H 1.09010 * 109.91227 * 26.49318 * 16 15 14 37 37 H 1.08998 * 109.92170 * 265.20327 * 16 15 14 38 38 H 1.08997 * 110.31509 * 239.86183 * 17 16 15 39 39 H 1.08996 * 110.39207 * 117.73431 * 17 16 15 40 40 H 1.08004 * 119.08807 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.41088 * 179.97438 * 25 24 23 42 42 H 1.09005 * 109.47371 * 89.99687 * 27 26 25 43 43 H 1.09006 * 109.47210 * 209.99641 * 27 26 25 44 44 H 1.09004 * 109.47401 * 329.99859 * 27 26 25 45 45 H 1.08990 * 110.67006 * 81.84060 * 28 15 14 46 46 H 1.09006 * 110.66655 * 318.70928 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5651 1.2181 0.0005 5 6 4.2408 -0.0195 0.0064 6 6 5.6501 -0.0705 0.0125 7 1 6.1615 -0.9207 -0.4142 8 6 6.3860 0.9805 0.5715 9 7 5.7831 1.8891 1.2951 10 14 8.2288 1.0864 0.2847 11 1 8.4941 1.8820 -0.9408 12 1 8.8742 1.7425 1.4501 13 1 8.7830 -0.2810 0.1168 14 6 3.4737 -1.2109 0.0009 15 7 4.1073 -2.4378 0.0019 16 6 4.6466 -2.7549 1.3422 17 6 4.5268 -4.2788 1.5284 18 6 3.8619 -4.7931 0.2309 19 1 4.6138 -5.1536 -0.4711 20 8 2.9115 -5.8196 0.5223 21 6 3.3614 -7.0977 0.5048 22 7 4.6331 -7.3611 0.2262 23 6 5.0749 -8.6024 0.2076 24 7 4.2836 -9.6253 0.4611 25 6 3.0030 -9.4421 0.7472 26 6 2.4968 -8.1562 0.7779 27 6 1.0459 -7.9051 1.0986 28 6 3.1533 -3.5299 -0.3195 29 7 2.1523 -1.1511 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6363 2.1398 -0.0007 34 1 4.1135 2.1486 0.0010 35 1 6.2932 2.6173 1.6828 36 1 4.0652 -2.2405 2.1075 37 1 5.6926 -2.4545 1.4022 38 1 3.9002 -4.5066 2.3906 39 1 5.5137 -4.7252 1.6503 40 1 6.1139 -8.7866 -0.0226 41 1 2.3625 -10.2869 0.9531 42 1 0.9285 -7.7769 2.1747 43 1 0.7115 -7.0027 0.5866 44 1 0.4481 -8.7539 0.7665 45 1 3.0078 -3.6090 -1.3967 46 1 2.2016 -3.3710 0.1876 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158284167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:50 Heat of formation + Delta-G solvation = 35.686967 kcal Electronic energy + Delta-G solvation = -29224.352544 eV Core-core repulsion = 25306.706365 eV Total energy + Delta-G solvation = -3917.646179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.30787 -41.20679 -39.88597 -38.21105 -36.07733 -34.84244 -34.09045 -33.24075 -32.64759 -30.40954 -29.99691 -29.20289 -28.42506 -26.00605 -25.27819 -24.04275 -23.65528 -22.83076 -21.85622 -21.64402 -19.81879 -19.22008 -18.84350 -17.73574 -17.41401 -17.16149 -16.54425 -16.33253 -15.97530 -15.66758 -15.37725 -15.24803 -15.06083 -14.88309 -14.50696 -14.41426 -14.21987 -14.02954 -13.86394 -13.82818 -13.47179 -13.20726 -13.14254 -13.06086 -12.94425 -12.68916 -12.60970 -12.55002 -12.18401 -12.15444 -11.91451 -11.67923 -11.55091 -11.23737 -11.15225 -10.41576 -10.35800 -9.97140 -9.85553 -9.83715 -8.93274 -8.58372 -6.31720 -0.06898 0.12073 0.72923 1.00802 1.39903 1.50801 1.52968 1.68727 2.20269 2.71030 2.75741 2.94071 3.16266 3.31045 3.48237 3.56151 3.66564 3.74360 3.94171 3.97479 4.05482 4.10589 4.26938 4.40255 4.45093 4.58411 4.64022 4.66643 4.72565 4.79327 4.81866 4.87806 4.94033 4.97642 5.00524 5.00894 5.05388 5.15075 5.17650 5.24157 5.33490 5.39597 5.65917 5.76741 5.85992 5.94066 6.11118 6.13922 6.32533 6.66960 6.80811 6.98476 7.07343 7.68558 8.29628 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012495 B = 0.003199 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.401267 B = 8751.320858 C =10699.041513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.006 4.006 3 C -0.161 4.161 4 C -0.149 4.149 5 C 0.049 3.951 6 C -0.450 4.450 7 H 0.084 0.916 8 C 0.034 3.966 9 N -0.825 5.825 10 Si 0.981 3.019 11 H -0.264 1.264 12 H -0.270 1.270 13 H -0.257 1.257 14 C 0.156 3.844 15 N -0.439 5.439 16 C 0.062 3.938 17 C -0.129 4.129 18 C 0.100 3.900 19 H 0.102 0.898 20 O -0.294 6.294 21 C 0.340 3.660 22 N -0.588 5.588 23 C 0.319 3.681 24 N -0.553 5.553 25 C 0.173 3.827 26 C -0.214 4.214 27 C -0.095 4.095 28 C 0.059 3.941 29 N -0.505 5.505 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.289 0.711 36 H 0.021 0.979 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.223 0.777 41 H 0.210 0.790 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 -16.073 0.773 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.145 4.145 3 C -0.181 4.181 4 C -0.175 4.175 5 C 0.043 3.957 6 C -0.480 4.480 7 H 0.102 0.898 8 C -0.181 4.181 9 N -0.452 5.452 10 Si 0.802 3.198 11 H -0.188 1.188 12 H -0.194 1.194 13 H -0.181 1.181 14 C -0.077 4.077 15 N -0.161 5.161 16 C -0.064 4.064 17 C -0.167 4.167 18 C 0.043 3.957 19 H 0.120 0.880 20 O -0.198 6.198 21 C 0.154 3.846 22 N -0.318 5.318 23 C 0.032 3.968 24 N -0.271 5.271 25 C 0.011 3.989 26 C -0.219 4.219 27 C -0.153 4.153 28 C -0.069 4.069 29 N -0.218 5.218 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.239 0.761 41 H 0.226 0.774 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.096 0.904 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.435 -16.584 0.393 16.941 hybrid contribution 0.147 1.792 0.666 1.917 sum -3.288 -14.792 1.059 15.190 Atomic orbital electron populations 1.20332 0.88154 1.02341 1.01694 1.20875 0.96948 0.87750 1.08909 1.21710 0.94793 0.98429 1.03206 1.21672 0.93449 0.98270 1.04117 1.18311 0.94944 0.90511 0.91971 1.19601 0.90962 1.04554 1.32896 0.89805 1.26774 1.05744 0.93587 0.92012 1.69839 1.40376 1.11358 1.23581 0.85195 0.75995 0.79791 0.78802 1.18845 1.19417 1.18054 1.19765 0.87572 0.90648 1.09721 1.61830 1.29599 0.99231 1.25410 1.22593 1.00907 0.94468 0.88475 1.22749 1.02310 0.94163 0.97507 1.23145 0.90179 0.85000 0.97338 0.88038 1.86248 1.38427 1.11970 1.83147 1.20386 0.89262 0.85858 0.89121 1.68119 1.15058 1.26951 1.21643 1.25248 1.01313 0.81183 0.89074 1.68496 1.06067 1.35980 1.16548 1.23610 0.91359 0.95576 0.88397 1.21171 0.99827 0.92533 1.08399 1.20567 0.88508 1.03635 1.02547 1.22854 0.95529 0.87762 1.00769 1.66818 1.09753 1.30744 1.14452 0.91941 0.90365 0.92167 0.85695 0.86448 0.90039 0.96077 0.90085 0.90729 0.88904 0.76059 0.77372 0.90289 0.92199 0.88208 0.90388 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.15 71.23 0.72 -1.57 16 2 C -0.01 -0.25 6.79 42.64 0.29 0.04 16 3 C -0.16 -7.42 9.69 22.32 0.22 -7.20 16 4 C -0.15 -7.72 8.77 22.89 0.20 -7.52 16 5 C 0.05 2.59 5.52 -21.06 -0.12 2.48 16 6 C -0.45 -23.42 7.76 23.37 0.18 -23.24 16 7 H 0.08 4.33 7.63 -2.91 -0.02 4.31 16 8 C 0.03 1.63 5.26 85.25 0.45 2.08 16 9 N -0.83 -41.56 10.87 21.83 0.24 -41.32 16 10 Si 0.98 37.31 29.58 68.60 2.03 39.34 16 11 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 12 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 13 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 14 C 0.16 7.84 5.83 134.05 0.78 8.62 16 15 N -0.44 -19.48 4.64 -687.70 -3.19 -22.67 16 16 C 0.06 2.53 6.00 86.44 0.52 3.05 16 17 C -0.13 -4.19 6.69 31.47 0.21 -3.98 16 18 C 0.10 3.28 3.27 31.80 0.10 3.38 16 19 H 0.10 3.32 7.16 -2.39 -0.02 3.30 16 20 O -0.29 -8.94 9.05 -88.15 -0.80 -9.74 16 21 C 0.34 9.07 7.50 84.82 0.64 9.70 16 22 N -0.59 -15.32 8.87 -312.90 -2.78 -18.10 16 23 C 0.32 6.66 12.28 180.90 2.22 8.88 16 24 N -0.55 -11.09 10.43 -200.25 -2.09 -13.18 16 25 C 0.17 2.88 11.00 84.59 0.93 3.81 16 26 C -0.21 -4.35 5.93 -19.59 -0.12 -4.47 16 27 C -0.09 -1.48 9.86 71.24 0.70 -0.78 16 28 C 0.06 2.27 5.86 86.65 0.51 2.78 16 29 N -0.50 -24.40 8.28 -179.58 -1.49 -25.89 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 2.24 8.07 -2.38 -0.02 2.22 16 32 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 34 H 0.12 6.27 6.27 -2.91 -0.02 6.25 16 35 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 36 H 0.02 0.94 7.75 -2.38 -0.02 0.92 16 37 H 0.08 3.37 7.73 -2.39 -0.02 3.35 16 38 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 39 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.22 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.16 7.63 -2.38 -0.02 1.14 16 44 H 0.10 0.94 8.10 -2.38 -0.02 0.92 16 45 H 0.08 2.99 8.14 -2.39 -0.02 2.98 16 46 H 0.06 2.62 6.97 -2.38 -0.02 2.60 16 Total: -1.00 -63.76 379.79 1.36 -62.40 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 1.00 Total: 33.08 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 8.44 Total: -3.93 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -9.31 Total: -121.15 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.80 Total: -9.74 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -63.76 1.36 -62.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158284167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.088 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds