Wall clock time and date at job start Tue Mar 31 2020 23:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30373 * 125.96556 * 2 1 4 4 N 1.39921 * 109.02100 * 180.28571 * 3 2 1 5 5 C 1.46504 * 125.74217 * 179.71542 * 4 3 2 6 6 C 1.34417 * 108.51425 * 359.73217 * 4 3 2 7 7 F 1.35097 * 126.34448 * 180.02562 * 6 4 3 8 8 C 1.38500 * 107.30736 * 0.02562 * 6 4 3 9 9 C 1.47172 * 126.45230 * 179.97438 * 8 6 4 10 10 O 1.21641 * 120.00241 * 90.02999 * 9 8 6 11 11 N 1.34780 * 120.00121 * 270.02413 * 9 8 6 12 12 C 1.47503 * 118.75455 * 359.97438 * 11 9 8 13 13 C 1.53575 * 111.02781 * 221.64664 * 12 11 9 14 14 C 1.51540 * 109.57462 * 39.97894 * 13 12 11 15 15 O 1.42154 * 108.75134 * 268.59659 * 14 13 12 16 16 C 1.38018 * 119.44332 * 87.23756 * 15 14 13 17 17 H 1.08994 * 109.46564 * 56.56707 * 16 15 14 18 18 C 1.52996 * 109.47052 * 176.56668 * 16 15 14 19 19 N 1.46498 * 109.47059 * 300.00456 * 18 16 15 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.45123 * 118.75501 * 180.02562 * 11 9 8 29 29 H 1.09007 * 109.47009 * 270.15094 * 1 2 3 30 30 H 1.08990 * 109.47409 * 30.14964 * 1 2 3 31 31 H 1.09004 * 109.47321 * 150.15559 * 1 2 3 32 32 H 1.08998 * 109.46713 * 270.02177 * 5 4 3 33 33 H 1.08995 * 109.47090 * 30.02038 * 5 4 3 34 34 H 1.08998 * 109.46978 * 150.02062 * 5 4 3 35 35 H 1.09003 * 109.16890 * 342.04449 * 12 11 9 36 36 H 1.08999 * 109.16887 * 101.25363 * 12 11 9 37 37 H 1.08991 * 109.45292 * 160.00754 * 13 12 11 38 38 H 1.08994 * 109.45599 * 279.94700 * 13 12 11 39 39 H 1.08995 * 109.59249 * 28.38008 * 14 13 12 40 40 H 1.09006 * 109.58764 * 148.82422 * 14 13 12 41 41 H 1.09004 * 109.47066 * 180.02562 * 18 16 15 42 42 H 1.08994 * 109.46974 * 60.00871 * 18 16 15 43 43 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 44 44 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 45 45 H 1.08994 * 109.46079 * 330.67465 * 28 11 9 46 46 H 1.08999 * 109.44696 * 210.71073 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0066 5 6 4.7763 1.5355 -0.0146 6 6 3.6480 -0.6963 -0.0047 7 9 4.7576 -1.4668 -0.0090 8 6 2.3375 -1.1444 0.0025 9 6 1.8931 -2.5474 0.0063 10 8 1.7143 -3.1259 1.0613 11 7 1.6841 -3.1913 -1.1592 12 6 1.9087 -2.4633 -2.4223 13 6 0.8054 -2.7779 -3.4432 14 6 -0.5348 -2.8425 -2.7388 15 8 -0.7772 -4.1853 -2.3401 16 6 -0.3007 -4.6281 -1.1229 17 1 -0.6858 -3.9896 -0.3280 18 6 -0.7609 -6.0683 -0.8885 19 7 -2.2250 -6.1190 -0.8875 20 6 -2.8686 -7.3132 -0.7002 21 1 -2.2968 -8.2168 -0.5488 22 6 -4.2558 -7.3622 -0.7051 23 7 -4.9526 -6.2609 -0.8902 24 14 -5.1337 -8.9910 -0.4489 25 1 -4.1307 -10.0702 -0.2639 26 1 -5.9954 -8.9045 0.7576 27 1 -5.9732 -9.2929 -1.6361 28 6 1.2457 -4.5742 -1.1239 29 1 -0.3633 0.0027 1.0277 30 1 -0.3634 0.8885 -0.5161 31 1 -0.3634 -0.8914 -0.5114 32 1 5.0593 1.7541 -1.0442 33 1 4.5287 2.4643 0.4992 34 1 5.6076 1.0487 0.4952 35 1 1.9156 -1.3919 -2.2215 36 1 2.8736 -2.7551 -2.8369 37 1 0.7793 -1.9959 -4.2020 38 1 1.0127 -3.7370 -3.9178 39 1 -0.5173 -2.1978 -1.8601 40 1 -1.3213 -2.5156 -3.4191 41 1 -0.3849 -6.4179 0.0731 42 1 -0.3757 -6.7067 -1.6834 43 1 -2.7386 -5.3075 -1.0239 44 1 -5.9220 -6.2951 -0.8933 45 1 1.6256 -5.0527 -0.2213 46 1 1.6266 -5.0982 -2.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201957620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:54 Heat of formation + Delta-G solvation = -13.804030 kcal Electronic energy + Delta-G solvation = -31008.198942 eV Core-core repulsion = 26657.637448 eV Total energy + Delta-G solvation = -4350.561495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.68275 -41.83797 -40.25428 -38.29794 -35.59404 -34.59032 -34.51405 -32.81998 -31.03764 -30.78077 -29.96620 -28.67982 -26.88412 -26.26565 -25.04999 -23.21357 -22.07034 -21.57657 -20.98175 -20.87910 -19.44668 -18.13826 -17.41787 -17.14138 -17.01133 -16.47052 -16.40520 -16.33416 -15.56490 -15.13142 -15.03140 -14.63624 -14.35330 -14.08211 -13.92074 -13.88183 -13.65946 -13.46379 -13.18075 -13.04260 -12.88685 -12.72101 -12.58283 -12.47368 -12.25778 -11.96479 -11.65683 -11.32174 -11.25305 -10.89873 -10.75733 -10.73856 -10.24688 -10.05441 -9.87844 -9.72608 -9.62683 -9.34952 -9.04843 -8.78444 -8.53145 -6.79007 -5.64802 -2.92470 0.97786 1.51065 1.90027 2.38019 2.92861 3.43560 3.51035 3.56203 3.58709 3.89792 4.00968 4.34313 4.50082 4.55528 4.62228 4.68344 4.70483 4.77316 4.84372 4.87122 5.01541 5.22633 5.28379 5.34585 5.38799 5.47211 5.50557 5.53365 5.60006 5.67743 5.69543 5.87618 5.96551 6.03764 6.07672 6.15330 6.27625 6.39319 6.52958 6.72194 6.84186 6.97866 7.19144 7.79942 8.04929 8.07568 8.53794 9.65399 10.24188 10.60404 11.58256 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.002670 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.956369 B =10483.684682 C =10557.637251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.134 3.866 3 N -0.269 5.269 4 N -0.375 5.375 5 C 0.093 3.907 6 C 0.290 3.710 7 F -0.088 7.088 8 C -0.283 4.283 9 C 0.590 3.410 10 O -0.518 6.518 11 N -0.599 5.599 12 C 0.109 3.891 13 C -0.166 4.166 14 C 0.072 3.928 15 O -0.366 6.366 16 C 0.089 3.911 17 H 0.053 0.947 18 C 0.166 3.834 19 N -0.725 5.725 20 C -0.234 4.234 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.080 3.920 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.026 0.974 43 H 0.388 0.612 44 H 0.253 0.747 45 H 0.095 0.905 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.582 18.940 -3.579 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 N -0.091 5.091 4 N -0.160 5.160 5 C -0.047 4.047 6 C 0.143 3.857 7 F -0.068 7.068 8 C -0.299 4.299 9 C 0.375 3.625 10 O -0.393 6.393 11 N -0.331 5.331 12 C -0.013 4.013 13 C -0.204 4.204 14 C -0.004 4.004 15 O -0.284 6.284 16 C 0.029 3.971 17 H 0.071 0.929 18 C 0.038 3.962 19 N -0.369 5.369 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.043 4.043 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.221 0.779 44 H 0.063 0.937 45 H 0.113 0.887 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.603 19.636 -3.108 29.359 hybrid contribution 0.128 -1.256 0.174 1.275 sum 21.731 18.379 -2.934 28.612 Atomic orbital electron populations 1.20436 0.84908 1.04277 1.04570 1.22241 0.97296 0.87849 0.95838 1.77346 0.84025 1.21017 1.26742 1.48685 1.07359 1.02517 1.57432 1.22072 0.83607 0.94717 1.04351 1.17745 0.83271 0.81869 1.02824 1.91660 1.49679 1.71596 1.93828 1.19673 0.90404 0.95738 1.24053 1.17212 0.77249 0.84179 0.83842 1.90845 1.50509 1.67167 1.30748 1.47867 1.66637 1.12922 1.05708 1.21930 0.98679 0.96723 0.84000 1.22505 0.95830 1.03812 0.98254 1.22172 0.95593 0.84478 0.98196 1.86449 1.77603 1.27289 1.37061 1.22259 0.90834 0.97947 0.86068 0.92946 1.20615 0.87394 0.90140 0.98072 1.42218 0.99030 1.08661 1.87035 1.19280 0.89418 0.87223 1.40653 0.91165 1.24729 0.96285 0.96998 1.03143 1.69690 1.05460 1.25802 1.57157 0.86120 0.79644 0.83240 0.77227 1.20601 1.21977 1.21972 1.22473 0.96723 0.80924 1.04202 0.89050 0.89581 0.89807 0.89740 0.88061 0.89039 0.90208 0.91717 0.89762 0.89846 0.93404 0.89173 0.94734 0.95583 0.77851 0.93714 0.88695 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.28 36.01 0.37 -0.43 16 2 C 0.13 1.51 6.93 -82.01 -0.57 0.95 16 3 N -0.27 -2.90 12.49 33.91 0.42 -2.48 16 4 N -0.38 -3.46 3.98 -67.94 -0.27 -3.73 16 5 C 0.09 0.41 11.43 59.85 0.68 1.09 16 6 C 0.29 3.17 8.70 -16.32 -0.14 3.03 16 7 F -0.09 -0.93 17.31 2.25 0.04 -0.89 16 8 C -0.28 -3.53 3.86 -104.97 -0.41 -3.93 16 9 C 0.59 8.73 7.17 -12.63 -0.09 8.64 16 10 O -0.52 -9.69 16.54 5.24 0.09 -9.61 16 11 N -0.60 -7.82 2.19 -173.88 -0.38 -8.20 16 12 C 0.11 1.08 6.03 -3.19 -0.02 1.06 16 13 C -0.17 -1.64 5.79 -27.17 -0.16 -1.80 16 14 C 0.07 0.94 6.38 36.42 0.23 1.17 16 15 O -0.37 -6.46 9.18 -26.55 -0.24 -6.70 16 16 C 0.09 1.59 2.73 -25.82 -0.07 1.52 16 17 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.17 3.55 5.95 -4.04 -0.02 3.53 16 19 N -0.73 -19.43 5.49 -59.91 -0.33 -19.76 16 20 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -29.10 13.06 55.49 0.72 -28.37 16 24 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C 0.08 1.17 4.86 -3.87 -0.02 1.15 16 29 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.85 6.06 -51.93 -0.31 0.54 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.74 6.08 -51.93 -0.32 0.43 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 39 H 0.05 0.60 5.45 -51.93 -0.28 0.32 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.39 11.02 7.53 -40.82 -0.31 10.71 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.09 1.47 7.27 -51.93 -0.38 1.09 16 46 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -36.41 380.91 -6.32 -42.73 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.63 Total: 4.78 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -0.46 Total: 8.45 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.17 Total: -62.54 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.16 Total: -16.31 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.04 Total: -0.89 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.41 -6.32 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201957620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.931 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds