Wall clock time and date at job start Tue Mar 31 2020 23:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30373 * 125.96556 * 2 1 4 4 N 1.39921 * 109.02100 * 180.28571 * 3 2 1 5 5 C 1.46504 * 125.74217 * 179.71542 * 4 3 2 6 6 C 1.34417 * 108.51425 * 359.73217 * 4 3 2 7 7 F 1.35097 * 126.34448 * 180.02562 * 6 4 3 8 8 C 1.38500 * 107.30736 * 0.02562 * 6 4 3 9 9 C 1.47172 * 126.45230 * 179.97438 * 8 6 4 10 10 O 1.21641 * 120.00241 * 90.02999 * 9 8 6 11 11 N 1.34780 * 120.00121 * 270.02413 * 9 8 6 12 12 C 1.47503 * 118.75455 * 359.97438 * 11 9 8 13 13 C 1.53575 * 111.02781 * 221.64664 * 12 11 9 14 14 C 1.51540 * 109.57462 * 39.97894 * 13 12 11 15 15 O 1.42154 * 108.75134 * 268.59659 * 14 13 12 16 16 C 1.38018 * 119.44332 * 87.23756 * 15 14 13 17 17 H 1.08994 * 109.46564 * 56.56707 * 16 15 14 18 18 C 1.52996 * 109.47052 * 176.56668 * 16 15 14 19 19 N 1.46498 * 109.47059 * 300.00456 * 18 16 15 20 20 C 1.36943 * 119.99752 * 179.72430 * 19 18 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 18 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 18 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.45123 * 118.75501 * 180.02562 * 11 9 8 29 29 H 1.09007 * 109.47009 * 270.15094 * 1 2 3 30 30 H 1.08990 * 109.47409 * 30.14964 * 1 2 3 31 31 H 1.09004 * 109.47321 * 150.15559 * 1 2 3 32 32 H 1.08998 * 109.46713 * 270.02177 * 5 4 3 33 33 H 1.08995 * 109.47090 * 30.02038 * 5 4 3 34 34 H 1.08998 * 109.46978 * 150.02062 * 5 4 3 35 35 H 1.09003 * 109.16890 * 342.04449 * 12 11 9 36 36 H 1.08999 * 109.16887 * 101.25363 * 12 11 9 37 37 H 1.08991 * 109.45292 * 160.00754 * 13 12 11 38 38 H 1.08994 * 109.45599 * 279.94700 * 13 12 11 39 39 H 1.08995 * 109.59249 * 28.38008 * 14 13 12 40 40 H 1.09006 * 109.58764 * 148.82422 * 14 13 12 41 41 H 1.09004 * 109.47066 * 180.02562 * 18 16 15 42 42 H 1.08994 * 109.46974 * 60.00871 * 18 16 15 43 43 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 44 44 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 45 45 H 1.08994 * 109.46079 * 330.67465 * 28 11 9 46 46 H 1.08999 * 109.44696 * 210.71073 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6474 -0.0066 5 6 4.7763 1.5355 -0.0146 6 6 3.6480 -0.6963 -0.0047 7 9 4.7576 -1.4668 -0.0090 8 6 2.3375 -1.1444 0.0025 9 6 1.8931 -2.5474 0.0063 10 8 1.7143 -3.1259 1.0613 11 7 1.6841 -3.1913 -1.1592 12 6 1.9087 -2.4633 -2.4223 13 6 0.8054 -2.7779 -3.4432 14 6 -0.5348 -2.8425 -2.7388 15 8 -0.7772 -4.1853 -2.3401 16 6 -0.3007 -4.6281 -1.1229 17 1 -0.6858 -3.9896 -0.3280 18 6 -0.7609 -6.0683 -0.8885 19 7 -2.2250 -6.1190 -0.8875 20 6 -2.8686 -7.3132 -0.7002 21 1 -2.2968 -8.2168 -0.5488 22 6 -4.2558 -7.3622 -0.7051 23 7 -4.9526 -6.2609 -0.8902 24 14 -5.1337 -8.9910 -0.4489 25 1 -4.1307 -10.0702 -0.2639 26 1 -5.9954 -8.9045 0.7576 27 1 -5.9732 -9.2929 -1.6361 28 6 1.2457 -4.5742 -1.1239 29 1 -0.3633 0.0027 1.0277 30 1 -0.3634 0.8885 -0.5161 31 1 -0.3634 -0.8914 -0.5114 32 1 5.0593 1.7541 -1.0442 33 1 4.5287 2.4643 0.4992 34 1 5.6076 1.0487 0.4952 35 1 1.9156 -1.3919 -2.2215 36 1 2.8736 -2.7551 -2.8369 37 1 0.7793 -1.9959 -4.2020 38 1 1.0127 -3.7370 -3.9178 39 1 -0.5173 -2.1978 -1.8601 40 1 -1.3213 -2.5156 -3.4191 41 1 -0.3849 -6.4179 0.0731 42 1 -0.3757 -6.7067 -1.6834 43 1 -2.7386 -5.3075 -1.0239 44 1 -5.9220 -6.2951 -0.8933 45 1 1.6256 -5.0527 -0.2213 46 1 1.6266 -5.0982 -2.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201957620.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:53 Heat of formation + Delta-G solvation = -39.475253 kcal Electronic energy + Delta-G solvation = -31009.312130 eV Core-core repulsion = 26657.637448 eV Total energy + Delta-G solvation = -4351.674683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.50669 -42.68396 -41.37467 -39.55894 -36.91666 -36.22056 -35.28308 -34.30790 -32.65016 -31.86838 -30.68892 -30.03489 -28.04984 -27.09625 -26.49376 -24.77916 -23.37974 -22.54173 -22.29151 -21.80701 -20.41482 -19.23162 -19.04021 -18.26569 -17.99531 -17.59849 -17.55286 -17.30907 -16.73595 -16.55721 -16.03623 -15.77703 -15.74047 -15.14029 -15.06375 -14.81933 -14.77194 -14.56433 -14.52168 -14.20313 -13.90175 -13.81758 -13.58325 -13.43835 -13.26466 -13.13309 -13.05242 -12.77977 -12.63410 -12.33629 -12.13749 -12.07656 -11.94246 -11.79827 -11.43415 -11.17002 -10.95811 -10.54941 -10.47023 -9.91445 -9.70234 -8.97295 -7.91089 -5.20275 0.16363 0.82362 1.03280 1.27058 1.48746 1.50632 1.60742 1.90153 2.58666 2.66335 2.75004 3.13246 3.42360 3.57572 3.63258 3.68979 3.81562 3.97483 4.01720 4.10092 4.13901 4.19312 4.28186 4.30454 4.37778 4.41519 4.54675 4.59021 4.62452 4.65892 4.72016 4.76185 4.81070 4.82621 4.91425 5.11079 5.12893 5.18536 5.24915 5.47129 5.50970 5.57552 6.12519 6.19050 6.29888 6.77534 6.95746 7.36341 8.10976 8.36394 9.33002 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.002670 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.956369 B =10483.684682 C =10557.637251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.130 3.870 3 N -0.274 5.274 4 N -0.364 5.364 5 C 0.080 3.920 6 C 0.294 3.706 7 F -0.086 7.086 8 C -0.306 4.306 9 C 0.590 3.410 10 O -0.569 6.569 11 N -0.593 5.593 12 C 0.108 3.892 13 C -0.154 4.154 14 C 0.063 3.937 15 O -0.393 6.393 16 C 0.106 3.894 17 H 0.025 0.975 18 C 0.163 3.837 19 N -0.739 5.739 20 C -0.244 4.244 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.293 1.293 27 H -0.291 1.291 28 C 0.092 3.908 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.083 0.917 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.518 19.936 -4.884 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 N -0.097 5.097 4 N -0.148 5.148 5 C -0.058 4.058 6 C 0.145 3.855 7 F -0.065 7.065 8 C -0.322 4.322 9 C 0.377 3.623 10 O -0.448 6.448 11 N -0.325 5.325 12 C -0.013 4.013 13 C -0.192 4.192 14 C -0.013 4.013 15 O -0.312 6.312 16 C 0.046 3.954 17 H 0.043 0.957 18 C 0.036 3.964 19 N -0.382 5.382 20 C -0.376 4.376 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.806 3.194 25 H -0.190 1.190 26 H -0.220 1.220 27 H -0.218 1.218 28 C -0.032 4.032 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 23.604 20.661 -4.451 31.683 hybrid contribution -0.376 -1.459 0.551 1.605 sum 23.228 19.201 -3.899 30.388 Atomic orbital electron populations 1.20456 0.84366 1.04754 1.04528 1.22352 0.97788 0.87493 0.95938 1.77318 0.84764 1.20785 1.26837 1.49053 1.07879 1.02324 1.55546 1.22548 0.82377 0.94602 1.06310 1.17652 0.82801 0.82627 1.02401 1.91667 1.49403 1.71701 1.93764 1.19517 0.91571 0.94645 1.26505 1.17577 0.76304 0.84966 0.83428 1.90811 1.52871 1.68516 1.32575 1.47943 1.65498 1.12330 1.06687 1.22171 0.99717 0.97008 0.82443 1.22422 0.93487 1.04869 0.98412 1.22465 0.97992 0.82212 0.98639 1.86374 1.78475 1.29942 1.36410 1.21854 0.92849 0.95121 0.85621 0.95745 1.20753 0.84602 0.92979 0.98112 1.42410 1.01155 1.07561 1.87032 1.19706 0.90023 0.88190 1.39663 0.90481 1.25619 0.97132 1.00642 1.03644 1.69856 1.05437 1.28059 1.58695 0.85018 0.78347 0.79318 0.76730 1.18954 1.22048 1.21842 1.22217 0.94126 0.82291 1.04601 0.89404 0.87434 0.90892 0.87509 0.86769 0.87408 0.89161 0.89492 0.86361 0.90231 0.93442 0.88349 0.94750 0.94839 0.79327 0.94045 0.89856 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.28 71.24 0.73 -0.83 16 2 C 0.13 2.82 6.93 43.55 0.30 3.12 16 3 N -0.27 -5.42 12.49 -46.64 -0.58 -6.00 16 4 N -0.36 -5.87 3.98 -368.86 -1.47 -7.34 16 5 C 0.08 0.46 11.43 127.77 1.46 1.92 16 6 C 0.29 5.96 8.70 84.36 0.73 6.69 16 7 F -0.09 -1.67 17.31 44.97 0.78 -0.89 16 8 C -0.31 -7.44 3.86 -20.09 -0.08 -7.52 16 9 C 0.59 17.64 7.17 86.59 0.62 18.26 16 10 O -0.57 -22.21 16.54 -4.16 -0.07 -22.28 16 11 N -0.59 -15.16 2.19 -822.28 -1.80 -16.96 16 12 C 0.11 1.88 6.03 86.38 0.52 2.40 16 13 C -0.15 -2.66 5.79 30.31 0.18 -2.48 16 14 C 0.06 1.58 6.38 71.50 0.46 2.03 16 15 O -0.39 -14.02 9.18 -117.90 -1.08 -15.10 16 16 C 0.11 3.89 2.73 31.18 0.09 3.98 16 17 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 18 C 0.16 7.13 5.95 86.38 0.51 7.64 16 19 N -0.74 -40.74 5.49 -343.46 -1.89 -42.63 16 20 C -0.24 -14.39 9.99 84.03 0.84 -13.56 16 21 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -61.87 13.06 21.65 0.28 -61.58 16 24 Si 0.98 47.86 29.55 68.60 2.03 49.88 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 28 C 0.09 2.68 4.86 87.23 0.42 3.10 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.52 6.06 -2.38 -0.01 1.51 16 32 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.09 1.45 6.08 -2.39 -0.01 1.44 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 39 H 0.05 1.20 5.45 -2.39 -0.01 1.19 16 40 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.37 22.19 7.53 -92.71 -0.70 21.49 16 44 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.08 2.65 7.27 -2.39 -0.02 2.63 16 46 H 0.11 2.66 8.11 -2.39 -0.02 2.64 16 Total: -1.00 -80.65 380.91 3.77 -76.88 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.32 Total: 25.47 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 7.25 Total: 20.53 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -5.46 Total: -134.51 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.15 Total: -37.38 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.78 Total: -0.89 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -80.65 3.77 -76.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201957620.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.407 kcal (2) G-P(sol) polarization free energy of solvation -80.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds