Wall clock time and date at job start Tue Mar 31 2020 23:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30845 * 125.89752 * 2 1 4 4 N 1.40083 * 108.20332 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03621 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92776 * 0.26264 * 4 3 2 7 7 C 1.35315 * 107.74249 * 359.57693 * 6 4 3 8 8 C 1.50706 * 126.03996 * 180.16185 * 7 6 4 9 9 N 1.46899 * 109.47138 * 103.26316 * 8 7 6 10 10 C 1.46891 * 110.99954 * 288.14976 * 9 8 7 11 11 C 1.46900 * 110.99791 * 164.19745 * 9 8 7 12 12 C 1.52993 * 109.47070 * 190.00271 * 11 9 8 13 13 C 1.53003 * 109.47255 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.47052 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99614 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00323 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99808 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99849 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00177 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99992 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00291 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47281 * 60.00094 * 23 21 19 25 25 H 1.48502 * 109.47483 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47468 * 300.00137 * 23 21 19 27 27 H 1.09004 * 109.46794 * 85.53114 * 1 2 3 28 28 H 1.08993 * 109.47144 * 205.52975 * 1 2 3 29 29 H 1.09004 * 109.47347 * 325.53774 * 1 2 3 30 30 H 1.08997 * 109.46853 * 90.02364 * 5 4 3 31 31 H 1.08998 * 109.47356 * 210.02643 * 5 4 3 32 32 H 1.09002 * 109.47222 * 330.02753 * 5 4 3 33 33 H 1.07994 * 126.12574 * 179.73337 * 6 4 3 34 34 H 1.09006 * 109.46694 * 223.26564 * 8 7 6 35 35 H 1.08994 * 109.46611 * 343.26059 * 8 7 6 36 36 H 1.08998 * 109.47536 * 54.22395 * 10 9 8 37 37 H 1.09001 * 109.47217 * 174.23284 * 10 9 8 38 38 H 1.09005 * 109.47485 * 294.23034 * 10 9 8 39 39 H 1.09005 * 109.47172 * 309.99684 * 11 9 8 40 40 H 1.08997 * 109.47399 * 69.99411 * 11 9 8 41 41 H 1.08997 * 109.46940 * 299.99655 * 12 11 9 42 42 H 1.09001 * 109.47779 * 59.99833 * 12 11 9 43 43 H 1.08997 * 109.46825 * 299.99676 * 13 12 11 44 44 H 1.08997 * 109.46982 * 59.99746 * 13 12 11 45 45 H 0.96996 * 119.99991 * 359.97438 * 14 13 12 46 46 H 1.08997 * 109.47051 * 299.99630 * 17 15 14 47 47 H 1.09001 * 109.47677 * 59.99813 * 17 15 14 48 48 H 0.97000 * 119.99570 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 3.6143 -0.7153 -0.0068 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0008 9 7 1.4134 -2.9353 1.3490 10 6 2.5555 -3.0688 2.2632 11 6 0.6152 -4.1682 1.3203 12 6 -0.0364 -4.3858 2.6873 13 6 -0.8673 -5.6703 2.6576 14 7 -1.4908 -5.8789 3.9668 15 6 -2.2746 -6.9552 4.1759 16 8 -2.4643 -7.7506 3.2803 17 6 -2.9164 -7.1696 5.5225 18 16 -3.9005 -8.6884 5.4869 19 6 -4.5165 -8.6925 7.1377 20 1 -4.2469 -7.8971 7.8167 21 6 -5.3481 -9.7181 7.5655 22 7 -5.6763 -10.6879 6.7381 23 14 -6.0018 -9.7222 9.3153 24 1 -6.8003 -8.4920 9.5484 25 1 -6.8614 -10.9158 9.5199 26 1 -4.8640 -9.7618 10.2688 27 1 -0.3633 0.0801 -1.0246 28 1 -0.3633 -0.9273 0.4429 29 1 -0.3634 0.8473 0.5815 30 1 5.0836 1.7156 1.0261 31 1 5.6090 0.9984 -0.5159 32 1 4.5560 2.4335 -0.5148 33 1 4.4891 -1.3484 -0.0129 34 1 1.0319 -2.6777 -0.7008 35 1 2.6813 -3.2156 -0.3025 36 1 3.1476 -2.1540 2.2409 37 1 2.1918 -3.2418 3.2761 38 1 3.1745 -3.9099 1.9509 39 1 -0.1594 -4.0818 0.5582 40 1 1.2616 -5.0142 1.0870 41 1 0.7381 -4.4722 3.4493 42 1 -0.6829 -3.5398 2.9206 43 1 -1.6418 -5.5843 1.8955 44 1 -0.2205 -6.5161 2.4246 45 1 -1.3394 -5.2426 4.6830 46 1 -2.1419 -7.2559 6.2845 47 1 -3.5630 -6.3236 5.7558 48 1 -6.2578 -11.4044 7.0370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234155063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:56 Heat of formation + Delta-G solvation = 37.985010 kcal Electronic energy + Delta-G solvation = -25655.488221 eV Core-core repulsion = 21873.385644 eV Total energy + Delta-G solvation = -3782.102577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.62322 -39.17644 -38.06156 -35.16353 -34.23958 -32.40817 -32.22490 -30.79865 -29.87499 -29.00035 -27.67249 -26.37906 -25.47306 -24.83755 -22.72555 -21.24280 -21.07125 -20.14477 -19.73278 -17.79934 -16.99225 -16.48914 -16.20014 -16.14758 -15.85178 -15.26905 -15.10588 -14.82455 -14.77923 -14.51612 -14.20135 -13.85008 -13.78463 -13.65427 -13.11768 -13.01878 -12.89177 -12.69470 -12.56481 -12.49648 -12.34615 -12.16527 -11.97841 -11.79429 -11.66116 -11.47716 -11.02235 -11.02159 -10.90752 -10.80214 -10.74483 -9.80116 -9.53614 -9.36507 -9.04107 -8.83793 -8.79370 -8.56532 -8.21281 -6.47445 -6.19328 -3.89784 1.50713 2.13632 2.36836 3.06623 3.14836 3.25261 3.29253 3.33019 3.64682 3.86981 4.10447 4.22862 4.36452 4.63087 4.63571 4.67296 4.74533 4.83247 4.90821 4.94489 4.96841 5.09868 5.15650 5.16034 5.22386 5.27076 5.34870 5.37022 5.41695 5.48429 5.56990 5.65546 5.68844 5.70903 5.74570 5.77871 5.90720 5.98999 6.06558 6.17526 6.37816 6.61248 6.65953 6.74867 6.78249 7.41323 7.61481 7.76394 8.37285 8.66351 9.25830 10.88064 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.001404 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.770690 B =19933.762491 C =20106.614197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.098 3.902 3 N -0.303 5.303 4 N -0.380 5.380 5 C 0.104 3.896 6 C 0.057 3.943 7 C -0.224 4.224 8 C 0.134 3.866 9 N -0.536 5.536 10 C 0.025 3.975 11 C 0.058 3.942 12 C -0.127 4.127 13 C 0.122 3.878 14 N -0.739 5.739 15 C 0.531 3.469 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.398 0.602 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.429 23.757 -14.355 35.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 N -0.126 5.126 4 N -0.161 5.161 5 C -0.038 4.038 6 C -0.090 4.090 7 C -0.236 4.236 8 C 0.005 3.995 9 N -0.260 5.260 10 C -0.124 4.124 11 C -0.070 4.070 12 C -0.165 4.165 13 C -0.002 4.002 14 N -0.393 5.393 15 C 0.317 3.683 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.186 0.814 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.906 23.998 -15.721 36.096 hybrid contribution 0.704 -0.224 2.274 2.391 sum 22.609 23.774 -13.447 35.457 Atomic orbital electron populations 1.20211 0.86502 1.03996 1.02574 1.22235 0.96973 0.89889 0.97787 1.77347 0.86282 1.22886 1.26079 1.48330 1.05643 1.04626 1.57485 1.21827 0.83611 0.95031 1.03330 1.22310 0.99121 0.85049 1.02527 1.19786 0.91467 0.95941 1.16441 1.20264 0.99020 0.90260 0.89937 1.61924 1.22074 1.33166 1.08842 1.22390 0.92410 1.00304 0.97256 1.22035 0.96947 0.90239 0.97789 1.21771 0.99580 0.97551 0.97571 1.21196 0.96378 0.96903 0.85772 1.45984 1.51719 1.27231 1.14408 1.20300 0.77858 0.80247 0.89898 1.90697 1.59912 1.43855 1.44863 1.23532 1.03508 1.07183 0.96198 1.85386 1.58101 1.22315 1.17601 1.22837 1.35240 1.12826 0.97548 0.90981 1.24985 0.95453 0.94568 0.98522 1.70013 1.34091 1.10990 1.35229 0.86229 0.78800 0.77743 0.82749 1.19939 1.20815 1.19959 0.90913 0.89419 0.91132 0.90814 0.89606 0.89368 0.81394 0.89995 0.94249 0.91729 0.91208 0.95748 0.90217 0.94427 0.91345 0.90326 0.91585 0.91891 0.76828 0.89272 0.89210 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.30 36.01 0.37 -0.18 16 2 C 0.10 0.93 7.22 -82.40 -0.59 0.33 16 3 N -0.30 -3.22 12.58 33.67 0.42 -2.79 16 4 N -0.38 -2.98 4.01 -68.16 -0.27 -3.25 16 5 C 0.10 0.38 11.47 59.85 0.69 1.06 16 6 C 0.06 0.39 10.85 -17.22 -0.19 0.20 16 7 C -0.22 -1.81 4.86 -105.05 -0.51 -2.32 16 8 C 0.13 0.92 5.02 -4.97 -0.02 0.89 16 9 N -0.54 -3.97 4.71 -244.38 -1.15 -5.12 16 10 C 0.02 0.17 9.13 60.06 0.55 0.72 16 11 C 0.06 0.42 4.95 -3.83 -0.02 0.41 16 12 C -0.13 -1.02 5.25 -26.73 -0.14 -1.16 16 13 C 0.12 1.38 5.67 -4.04 -0.02 1.35 16 14 N -0.74 -9.86 5.56 -60.30 -0.33 -10.19 16 15 C 0.53 10.01 7.85 -10.98 -0.09 9.93 16 16 O -0.52 -11.93 15.86 5.56 0.09 -11.84 16 17 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.08 0.53 7.81 -51.93 -0.41 0.13 16 35 H 0.04 0.24 8.04 -51.93 -0.42 -0.17 16 36 H 0.06 0.47 6.91 -51.93 -0.36 0.11 16 37 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 38 H 0.02 0.16 8.13 -51.93 -0.42 -0.26 16 39 H 0.08 0.55 7.86 -51.93 -0.41 0.15 16 40 H 0.04 0.28 8.11 -51.93 -0.42 -0.14 16 41 H 0.07 0.53 6.59 -51.93 -0.34 0.19 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 413.02 15.07 6.22 6.22 Total: -1.00 -37.22 413.02 -9.15 -46.37 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -8.06 Total: -1.69 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 0.44 Total: -4.72 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.60 Total: -46.92 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.22 -9.15 -46.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234155063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.357 kcal (2) G-P(sol) polarization free energy of solvation -37.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds