Wall clock time and date at job start Tue Mar 31 2020 23:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30845 * 125.89752 * 2 1 4 4 N 1.40083 * 108.20332 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03621 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92776 * 0.26264 * 4 3 2 7 7 C 1.35315 * 107.74249 * 359.57693 * 6 4 3 8 8 C 1.50706 * 126.03996 * 180.16185 * 7 6 4 9 9 N 1.46899 * 109.47138 * 103.26316 * 8 7 6 10 10 C 1.46891 * 110.99954 * 288.14976 * 9 8 7 11 11 C 1.46900 * 110.99791 * 164.19745 * 9 8 7 12 12 C 1.52993 * 109.47070 * 190.00271 * 11 9 8 13 13 C 1.53003 * 109.47255 * 180.02562 * 12 11 9 14 14 N 1.46501 * 109.47052 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99614 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00323 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99808 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.76197 * 99.99849 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00177 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99992 * 180.02562 * 19 18 17 22 22 N 1.31635 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00291 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47281 * 60.00094 * 23 21 19 25 25 H 1.48502 * 109.47483 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47468 * 300.00137 * 23 21 19 27 27 H 1.09004 * 109.46794 * 85.53114 * 1 2 3 28 28 H 1.08993 * 109.47144 * 205.52975 * 1 2 3 29 29 H 1.09004 * 109.47347 * 325.53774 * 1 2 3 30 30 H 1.08997 * 109.46853 * 90.02364 * 5 4 3 31 31 H 1.08998 * 109.47356 * 210.02643 * 5 4 3 32 32 H 1.09002 * 109.47222 * 330.02753 * 5 4 3 33 33 H 1.07994 * 126.12574 * 179.73337 * 6 4 3 34 34 H 1.09006 * 109.46694 * 223.26564 * 8 7 6 35 35 H 1.08994 * 109.46611 * 343.26059 * 8 7 6 36 36 H 1.08998 * 109.47536 * 54.22395 * 10 9 8 37 37 H 1.09001 * 109.47217 * 174.23284 * 10 9 8 38 38 H 1.09005 * 109.47485 * 294.23034 * 10 9 8 39 39 H 1.09005 * 109.47172 * 309.99684 * 11 9 8 40 40 H 1.08997 * 109.47399 * 69.99411 * 11 9 8 41 41 H 1.08997 * 109.46940 * 299.99655 * 12 11 9 42 42 H 1.09001 * 109.47779 * 59.99833 * 12 11 9 43 43 H 1.08997 * 109.46825 * 299.99676 * 13 12 11 44 44 H 1.08997 * 109.46982 * 59.99746 * 13 12 11 45 45 H 0.96996 * 119.99991 * 359.97438 * 14 13 12 46 46 H 1.08997 * 109.47051 * 299.99630 * 17 15 14 47 47 H 1.09001 * 109.47677 * 59.99813 * 17 15 14 48 48 H 0.97000 * 119.99570 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 3.6143 -0.7153 -0.0068 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0008 9 7 1.4134 -2.9353 1.3490 10 6 2.5555 -3.0688 2.2632 11 6 0.6152 -4.1682 1.3203 12 6 -0.0364 -4.3858 2.6873 13 6 -0.8673 -5.6703 2.6576 14 7 -1.4908 -5.8789 3.9668 15 6 -2.2746 -6.9552 4.1759 16 8 -2.4643 -7.7506 3.2803 17 6 -2.9164 -7.1696 5.5225 18 16 -3.9005 -8.6884 5.4869 19 6 -4.5165 -8.6925 7.1377 20 1 -4.2469 -7.8971 7.8167 21 6 -5.3481 -9.7181 7.5655 22 7 -5.6763 -10.6879 6.7381 23 14 -6.0018 -9.7222 9.3153 24 1 -6.8003 -8.4920 9.5484 25 1 -6.8614 -10.9158 9.5199 26 1 -4.8640 -9.7618 10.2688 27 1 -0.3633 0.0801 -1.0246 28 1 -0.3633 -0.9273 0.4429 29 1 -0.3634 0.8473 0.5815 30 1 5.0836 1.7156 1.0261 31 1 5.6090 0.9984 -0.5159 32 1 4.5560 2.4335 -0.5148 33 1 4.4891 -1.3484 -0.0129 34 1 1.0319 -2.6777 -0.7008 35 1 2.6813 -3.2156 -0.3025 36 1 3.1476 -2.1540 2.2409 37 1 2.1918 -3.2418 3.2761 38 1 3.1745 -3.9099 1.9509 39 1 -0.1594 -4.0818 0.5582 40 1 1.2616 -5.0142 1.0870 41 1 0.7381 -4.4722 3.4493 42 1 -0.6829 -3.5398 2.9206 43 1 -1.6418 -5.5843 1.8955 44 1 -0.2205 -6.5161 2.4246 45 1 -1.3394 -5.2426 4.6830 46 1 -2.1419 -7.2559 6.2845 47 1 -3.5630 -6.3236 5.7558 48 1 -6.2578 -11.4044 7.0370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234155063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:55 Heat of formation + Delta-G solvation = 10.921547 kcal Electronic energy + Delta-G solvation = -25656.661781 eV Core-core repulsion = 21873.385644 eV Total energy + Delta-G solvation = -3783.276137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16972 -40.58208 -38.71010 -36.24569 -34.80718 -34.56753 -33.13558 -31.61296 -30.48900 -30.18504 -28.20287 -27.69574 -27.00484 -25.48423 -23.44798 -22.08462 -21.61187 -21.38345 -20.29861 -19.78414 -17.75151 -17.44473 -17.39682 -17.00250 -16.86204 -16.59814 -16.25978 -16.01550 -15.63364 -15.41544 -15.25854 -14.85494 -14.65627 -14.37094 -14.25910 -14.13917 -13.75007 -13.59103 -13.26491 -13.15411 -13.14472 -13.01759 -12.89015 -12.85135 -12.76271 -12.60139 -12.53220 -12.34553 -12.13730 -11.72260 -11.59331 -11.39302 -11.11320 -10.92868 -10.26249 -10.12818 -10.07238 -9.33371 -9.10440 -8.65030 -8.32892 -6.11088 0.97290 1.28803 1.45295 1.48471 1.58359 1.64542 1.71381 1.77566 2.28259 2.33832 3.01164 3.17721 3.34905 3.67797 3.92389 3.97973 4.02313 4.13989 4.23415 4.26957 4.31910 4.32855 4.43149 4.47097 4.53590 4.56077 4.56238 4.62921 4.68709 4.72252 4.80696 4.84664 4.86317 4.90754 5.11210 5.12952 5.16170 5.22799 5.25785 5.29932 5.43172 5.50691 5.80382 6.15662 6.21240 6.21915 6.24477 6.55137 6.83210 7.08261 7.28295 8.76121 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.001404 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.770690 B =19933.762491 C =20106.614197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.080 3.920 3 N -0.347 5.347 4 N -0.384 5.384 5 C 0.095 3.905 6 C 0.062 3.938 7 C -0.240 4.240 8 C 0.138 3.862 9 N -0.543 5.543 10 C 0.027 3.973 11 C 0.061 3.939 12 C -0.111 4.111 13 C 0.123 3.877 14 N -0.713 5.713 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.200 0.800 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.416 0.584 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.050 25.196 -13.226 37.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 N -0.171 5.171 4 N -0.165 5.165 5 C -0.045 4.045 6 C -0.085 4.085 7 C -0.252 4.252 8 C 0.010 3.990 9 N -0.267 5.267 10 C -0.121 4.121 11 C -0.067 4.067 12 C -0.149 4.149 13 C -0.002 4.002 14 N -0.367 5.367 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.187 1.187 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.217 0.783 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.253 0.747 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.567 25.509 -14.585 37.667 hybrid contribution 0.340 -0.552 1.845 1.955 sum 23.908 24.957 -12.740 36.834 Atomic orbital electron populations 1.20205 0.85930 1.03806 1.02975 1.22565 0.97713 0.90376 0.97877 1.77263 0.87895 1.24105 1.27797 1.48672 1.05581 1.05520 1.56772 1.22133 0.83062 0.94983 1.04321 1.22828 0.99864 0.85016 1.00829 1.19967 0.91847 0.96073 1.17282 1.20234 0.99370 0.89817 0.89590 1.61893 1.22447 1.33010 1.09334 1.22364 0.92293 1.00351 0.97094 1.21977 0.97081 0.90395 0.97260 1.21630 0.99241 0.95582 0.98441 1.21327 0.96278 0.98373 0.84185 1.45755 1.49531 1.25504 1.15875 1.20065 0.78370 0.81086 0.88710 1.90686 1.61997 1.45969 1.45967 1.23380 1.03208 1.03525 0.98014 1.85566 1.60382 1.27896 1.18680 1.23186 1.35460 1.13371 0.97585 0.89899 1.26120 0.95511 0.93894 1.03519 1.70182 1.34961 1.11887 1.37744 0.85009 0.78369 0.78151 0.76493 1.18683 1.20389 1.18652 0.90165 0.89207 0.91641 0.89982 0.86702 0.89571 0.78283 0.89933 0.93283 0.92055 0.91287 0.95171 0.89928 0.94291 0.90480 0.89962 0.92300 0.92599 0.74684 0.87209 0.87211 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.30 71.24 0.73 -0.31 16 2 C 0.08 1.50 7.22 43.10 0.31 1.81 16 3 N -0.35 -7.30 12.58 -47.38 -0.60 -7.90 16 4 N -0.38 -5.57 4.01 -369.56 -1.48 -7.05 16 5 C 0.10 0.54 11.47 127.77 1.47 2.01 16 6 C 0.06 0.74 10.85 83.54 0.91 1.64 16 7 C -0.24 -3.55 4.86 -20.14 -0.10 -3.65 16 8 C 0.14 1.66 5.02 85.56 0.43 2.09 16 9 N -0.54 -6.99 4.71 -927.07 -4.37 -11.36 16 10 C 0.03 0.32 9.13 127.69 1.17 1.48 16 11 C 0.06 0.77 4.95 86.30 0.43 1.20 16 12 C -0.11 -1.52 5.25 30.59 0.16 -1.36 16 13 C 0.12 2.57 5.67 86.38 0.49 3.06 16 14 N -0.71 -17.59 5.56 -463.06 -2.57 -20.17 16 15 C 0.53 19.64 7.85 87.66 0.69 20.33 16 16 O -0.57 -26.47 15.86 -3.02 -0.05 -26.52 16 17 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 18 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -31.43 9.50 67.95 0.65 -30.78 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.82 5.49 84.86 0.47 1.29 16 22 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 23 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 27 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.09 1.24 7.85 -2.39 -0.02 1.23 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.08 0.96 7.81 -2.38 -0.02 0.94 16 35 H 0.05 0.49 8.04 -2.39 -0.02 0.47 16 36 H 0.06 0.77 6.91 -2.39 -0.02 0.75 16 37 H 0.07 0.81 6.56 -2.39 -0.02 0.79 16 38 H 0.03 0.32 8.13 -2.38 -0.02 0.30 16 39 H 0.08 1.01 7.86 -2.38 -0.02 0.99 16 40 H 0.04 0.49 8.11 -2.39 -0.02 0.47 16 41 H 0.08 0.97 6.59 -2.39 -0.02 0.95 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.42 7.39 8.47 -92.71 -0.79 6.61 16 46 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 47 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 48 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -83.06 413.02 0.48 -82.59 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.16 Total: 16.28 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 8.23 Total: -5.92 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -8.73 Total: -102.37 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -83.06 0.48 -82.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234155063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.508 kcal (2) G-P(sol) polarization free energy of solvation -83.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds