Wall clock time and date at job start Tue Mar 31 2020 23:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34694 * 117.00087 * 2 1 4 4 O 1.21446 * 119.99811 * 5.16135 * 3 2 1 5 5 C 1.47960 * 119.99854 * 185.16211 * 3 2 1 6 6 N 1.33508 * 120.57688 * 5.88569 * 5 3 2 7 7 C 1.31337 * 120.93502 * 180.02562 * 6 5 3 8 8 C 1.50697 * 118.91389 * 179.97438 * 7 6 5 9 9 N 1.32044 * 122.17524 * 359.97438 * 7 6 5 10 10 C 1.32398 * 121.04232 * 359.70149 * 9 7 6 11 11 O 1.35563 * 120.53211 * 180.31182 * 10 9 7 12 12 C 1.39725 * 120.57352 * 185.91141 * 5 3 2 13 13 O 1.35692 * 120.97214 * 359.97438 * 12 5 3 14 14 C 1.42900 * 116.99890 * 87.08205 * 13 12 5 15 15 H 1.08999 * 109.47099 * 340.54281 * 14 13 12 16 16 C 1.50701 * 109.47057 * 220.54596 * 14 13 12 17 17 H 1.07998 * 120.00519 * 121.46128 * 16 14 13 18 18 C 1.37880 * 119.99833 * 301.46765 * 16 14 13 19 19 N 1.31518 * 120.00015 * 8.93569 * 18 16 14 20 20 Si 1.86795 * 120.00002 * 188.93137 * 18 16 14 21 21 H 1.48508 * 109.47185 * 185.00131 * 20 18 16 22 22 H 1.48507 * 109.47093 * 304.99832 * 20 18 16 23 23 H 1.48496 * 109.47236 * 65.00053 * 20 18 16 24 24 C 1.53000 * 109.47335 * 100.54711 * 14 13 12 25 25 N 1.46898 * 109.46823 * 194.83625 * 24 14 13 26 26 C 1.46901 * 109.47524 * 64.93386 * 25 24 14 27 27 C 1.46904 * 109.46857 * 184.93193 * 25 24 14 28 28 C 1.46898 * 109.47175 * 304.92808 * 25 24 14 29 29 H 1.08996 * 109.46927 * 175.05940 * 1 2 3 30 30 H 1.09006 * 109.46630 * 295.05889 * 1 2 3 31 31 H 1.08995 * 109.46944 * 55.05422 * 1 2 3 32 32 H 1.08995 * 109.47695 * 89.99255 * 8 7 6 33 33 H 1.08998 * 109.47627 * 210.00096 * 8 7 6 34 34 H 1.09003 * 109.46928 * 329.99548 * 8 7 6 35 35 H 0.96703 * 114.00099 * 270.02647 * 11 10 9 36 36 H 0.96996 * 119.99775 * 356.80726 * 19 18 16 37 37 H 1.09006 * 109.46924 * 314.83017 * 24 14 13 38 38 H 1.08994 * 109.47285 * 74.82877 * 24 14 13 39 39 H 1.08990 * 109.47311 * 63.31125 * 26 25 24 40 40 H 1.09004 * 109.46926 * 183.31120 * 26 25 24 41 41 H 1.09006 * 109.46687 * 303.30733 * 26 25 24 42 42 H 1.09004 * 109.46899 * 59.99568 * 27 25 24 43 43 H 1.08998 * 109.46990 * 180.02562 * 27 25 24 44 44 H 1.08995 * 109.47211 * 299.99726 * 27 25 24 45 45 H 1.08997 * 109.46970 * 70.01170 * 28 25 24 46 46 H 1.09005 * 109.47489 * 190.01339 * 28 25 24 47 47 H 1.09003 * 109.47020 * 310.01276 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2001 0.0000 4 8 1.4060 2.2167 0.0946 5 6 3.5366 1.2799 -0.1153 6 7 4.2609 0.1805 -0.3370 7 6 5.5688 0.2431 -0.4401 8 6 6.3415 -1.0263 -0.6901 9 7 6.2289 1.3815 -0.3319 10 6 5.5921 2.5224 -0.1181 11 8 6.2797 3.6862 -0.0150 12 6 4.1936 2.5070 0.0066 13 8 3.4999 3.6511 0.2322 14 6 3.2203 3.9825 1.5938 15 1 3.3147 3.0896 2.2118 16 6 1.8173 4.5219 1.7016 17 1 1.0993 4.0347 2.3447 18 6 1.4501 5.6374 0.9792 19 7 2.2615 6.1264 0.0669 20 14 -0.1997 6.4541 1.2961 21 1 -0.4061 7.5499 0.3152 22 1 -1.2846 5.4502 1.1524 23 1 -0.2200 7.0113 2.6724 24 6 4.2127 5.0430 2.0748 25 7 4.1664 5.1278 3.5406 26 6 4.6369 3.8623 4.1196 27 6 5.0306 6.2254 3.9950 28 6 2.7855 5.3808 3.9731 29 1 -0.3633 -1.0238 -0.0885 30 1 -0.3633 0.4353 0.9310 31 1 -0.3633 0.5886 -0.8423 32 1 6.4409 -1.1858 -1.7637 33 1 7.3316 -0.9432 -0.2419 34 1 5.8109 -1.8682 -0.2453 35 1 6.5545 3.9021 0.8867 36 1 3.1371 5.7306 -0.0656 37 1 5.2192 4.7688 1.7584 38 1 3.9478 6.0094 1.6463 39 1 5.6802 3.7037 3.8470 40 1 4.5471 3.9039 5.2051 41 1 4.0321 3.0404 3.7362 42 1 4.6816 7.1644 3.5654 43 1 4.9966 6.2881 5.0827 44 1 6.0553 6.0377 3.6742 45 1 2.1804 4.4919 3.7949 46 1 2.7757 5.6198 5.0365 47 1 2.3757 6.2184 3.4087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234564590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:12 Heat of formation + Delta-G solvation = 20.527155 kcal Electronic energy + Delta-G solvation = -33035.778437 eV Core-core repulsion = 28726.103036 eV Total energy + Delta-G solvation = -4309.675401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.62544 -42.53523 -40.81761 -39.46305 -38.70932 -37.04637 -35.34931 -34.47643 -33.01755 -31.57843 -30.58560 -30.39118 -29.09029 -28.72228 -27.69750 -26.31584 -24.96343 -24.22163 -22.98709 -22.10312 -20.27132 -19.91947 -19.44552 -19.29632 -18.69690 -18.38036 -18.16999 -17.87564 -17.44108 -17.24873 -16.72337 -15.74064 -15.70497 -15.23638 -15.16623 -15.11664 -14.97877 -14.63443 -14.44519 -14.37257 -14.31144 -14.20992 -14.07103 -13.98454 -13.77911 -13.62313 -13.36127 -13.23242 -12.84771 -12.81053 -12.72102 -12.14216 -12.07657 -11.74712 -11.62796 -11.46028 -11.44038 -11.41648 -10.57761 -10.27762 -10.01005 -9.98654 -8.14177 -6.04706 -0.76457 -0.45487 0.10616 1.45597 1.63811 1.97775 2.01390 2.03928 2.15004 2.19400 2.25679 2.36322 2.49781 2.67693 2.76650 2.92829 2.97007 3.00797 3.20504 3.26551 3.34740 3.42617 3.46122 3.51967 3.58380 3.65794 3.73888 3.79760 3.90074 4.00607 4.10881 4.20420 4.38384 4.46690 4.53079 4.57063 4.60144 4.63841 4.69602 4.82373 5.12884 5.49402 5.54097 5.75631 5.97563 6.46567 6.61040 6.77124 7.00136 7.01942 7.69531 9.21226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.343 6.343 3 C 0.496 3.504 4 O -0.418 6.418 5 C 0.131 3.869 6 N -0.460 5.460 7 C 0.319 3.681 8 C -0.084 4.084 9 N -0.502 5.502 10 C 0.329 3.671 11 O -0.452 6.452 12 C 0.044 3.956 13 O -0.282 6.282 14 C 0.185 3.815 15 H 0.038 0.962 16 C -0.597 4.597 17 H 0.077 0.923 18 C 0.045 3.955 19 N -0.840 5.840 20 Si 1.054 2.946 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.280 1.280 24 C -0.031 4.031 25 N -0.255 5.255 26 C -0.050 4.050 27 C -0.040 4.040 28 C -0.035 4.035 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.391 0.609 36 H 0.286 0.714 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.141 0.859 46 H 0.093 0.907 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -1.551 15.373 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.259 6.259 3 C 0.333 3.667 4 O -0.297 6.297 5 C -0.014 4.014 6 N -0.180 5.180 7 C 0.052 3.948 8 C -0.143 4.143 9 N -0.230 5.230 10 C 0.136 3.864 11 O -0.258 6.258 12 C -0.008 4.008 13 O -0.195 6.195 14 C 0.131 3.869 15 H 0.056 0.944 16 C -0.632 4.632 17 H 0.095 0.905 18 C -0.170 4.170 19 N -0.472 5.472 20 Si 0.879 3.121 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.206 1.206 24 C -0.153 4.153 25 N 0.086 4.914 26 C -0.191 4.191 27 C -0.182 4.182 28 C -0.175 4.175 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.159 0.841 46 H 0.112 0.888 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.310 -0.543 14.022 15.823 hybrid contribution 0.644 -0.576 0.768 1.156 sum 7.954 -1.119 14.790 16.830 Atomic orbital electron populations 1.23337 0.75621 1.03860 1.02857 1.86622 1.23416 1.31647 1.84255 1.20414 0.87036 0.82722 0.76479 1.91203 1.64341 1.34674 1.39513 1.21058 0.92774 0.88627 0.98972 1.68325 1.07862 1.30395 1.11391 1.23057 0.86377 0.93030 0.92370 1.20637 0.99241 0.90304 1.04070 1.67685 1.43223 0.98334 1.13739 1.19931 0.86402 0.85535 0.94496 1.84975 1.74556 1.33208 1.33060 1.20862 0.90593 0.89443 0.99906 1.86879 1.70129 1.33802 1.28675 1.20769 0.94561 0.90733 0.80786 0.94369 1.22013 0.95457 1.13430 1.32265 0.90521 1.25997 1.04603 0.95137 0.91241 1.70891 1.08918 1.43371 1.24023 0.83666 0.74395 0.77271 0.76808 1.19730 1.20207 1.20645 1.24753 1.03549 1.11044 0.75913 1.45783 1.16251 1.13772 1.15639 1.24101 1.04619 0.86837 1.03591 1.24063 0.97289 0.91738 1.05082 1.24561 0.79676 1.11138 1.02135 0.87864 0.91694 0.91617 0.89013 0.89206 0.88905 0.75119 0.89929 0.89234 0.84003 0.87249 0.86295 0.86510 0.86124 0.86581 0.87013 0.84084 0.88822 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.07 10.59 101.05 1.07 1.14 16 2 O -0.34 -1.71 10.42 -40.48 -0.42 -2.13 16 3 C 0.50 3.15 7.94 34.71 0.28 3.43 16 4 O -0.42 -3.62 13.07 -26.36 -0.34 -3.96 16 5 C 0.13 0.69 6.79 -82.60 -0.56 0.13 16 6 N -0.46 -2.02 10.14 -7.35 -0.07 -2.10 16 7 C 0.32 0.85 7.64 -157.37 -1.20 -0.35 16 8 C -0.08 0.07 10.31 36.00 0.37 0.44 16 9 N -0.50 -1.47 10.33 -10.64 -0.11 -1.58 16 10 C 0.33 0.84 7.86 -16.49 -0.13 0.71 16 11 O -0.45 -0.07 12.76 -30.62 -0.39 -0.46 16 12 C 0.04 0.19 5.61 -38.21 -0.21 -0.03 16 13 O -0.28 -1.48 6.28 -46.37 -0.29 -1.77 16 14 C 0.18 0.14 1.59 -27.88 -0.04 0.09 16 15 H 0.04 -0.04 5.46 -51.93 -0.28 -0.32 16 16 C -0.60 -2.53 3.96 -34.44 -0.14 -2.66 16 17 H 0.08 0.36 7.09 -52.49 -0.37 -0.01 16 18 C 0.04 0.33 4.48 -17.82 -0.08 0.25 16 19 N -0.84 -8.31 12.75 55.43 0.71 -7.60 16 20 Si 1.05 6.95 29.91 -169.99 -5.08 1.86 16 21 H -0.27 -2.45 7.11 56.52 0.40 -2.05 16 22 H -0.28 -2.20 7.11 56.52 0.40 -1.80 16 23 H -0.28 -1.14 7.11 56.52 0.40 -0.74 16 24 C -0.03 0.15 3.54 -3.83 -0.01 0.14 16 25 N -0.26 2.61 0.05 -395.62 -0.02 2.59 16 26 C -0.05 0.60 7.83 60.06 0.47 1.07 16 27 C -0.04 0.52 7.99 60.07 0.48 1.00 16 28 C -0.03 0.29 6.69 60.06 0.40 0.69 16 29 H 0.10 -0.07 8.14 -51.93 -0.42 -0.50 16 30 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.17 8.10 -51.93 -0.42 -0.25 16 32 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 34 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.39 -2.42 7.26 45.56 0.33 -2.09 16 36 H 0.29 2.62 5.05 -40.82 -0.21 2.41 16 37 H 0.09 -0.64 5.45 -51.93 -0.28 -0.92 16 38 H 0.14 -0.28 5.91 -51.93 -0.31 -0.58 16 39 H 0.11 -1.50 8.11 -51.93 -0.42 -1.92 16 40 H 0.12 -1.70 8.13 -51.93 -0.42 -2.12 16 41 H 0.12 -1.16 5.88 -51.93 -0.31 -1.46 16 42 H 0.12 -1.45 8.11 -51.93 -0.42 -1.87 16 43 H 0.12 -1.73 8.07 -51.93 -0.42 -2.15 16 44 H 0.11 -1.60 8.13 -51.93 -0.42 -2.02 16 45 H 0.14 -0.86 5.33 -51.93 -0.28 -1.14 16 46 H 0.09 -1.08 7.99 -51.93 -0.41 -1.49 16 47 H 0.13 -0.70 6.98 -51.93 -0.36 -1.07 16 LS Contribution 371.62 15.07 5.60 5.60 Total: 0.00 -22.00 371.62 -5.66 -27.66 By element: Atomic # 1 Polarization: -18.24 SS G_CDS: -5.92 Total: -24.15 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 0.69 Total: 6.04 kcal Atomic # 7 Polarization: -9.19 SS G_CDS: 0.50 Total: -8.69 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -1.45 Total: -8.32 kcal Atomic # 14 Polarization: 6.95 SS G_CDS: -5.08 Total: 1.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -22.00 -5.66 -27.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234564590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.186 kcal (2) G-P(sol) polarization free energy of solvation -22.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds