Wall clock time and date at job start Tue Mar 31 2020 23:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34694 * 117.00087 * 2 1 4 4 O 1.21446 * 119.99811 * 5.16135 * 3 2 1 5 5 C 1.47960 * 119.99854 * 185.16211 * 3 2 1 6 6 N 1.33508 * 120.57688 * 5.88569 * 5 3 2 7 7 C 1.31337 * 120.93502 * 180.02562 * 6 5 3 8 8 C 1.50697 * 118.91389 * 179.97438 * 7 6 5 9 9 N 1.32044 * 122.17524 * 359.97438 * 7 6 5 10 10 C 1.32398 * 121.04232 * 359.70149 * 9 7 6 11 11 O 1.35563 * 120.53211 * 180.31182 * 10 9 7 12 12 C 1.39725 * 120.57352 * 185.91141 * 5 3 2 13 13 O 1.35692 * 120.97214 * 359.97438 * 12 5 3 14 14 C 1.42900 * 116.99890 * 87.08205 * 13 12 5 15 15 H 1.08999 * 109.47099 * 340.54281 * 14 13 12 16 16 C 1.50701 * 109.47057 * 220.54596 * 14 13 12 17 17 H 1.07998 * 120.00519 * 121.46128 * 16 14 13 18 18 C 1.37880 * 119.99833 * 301.46765 * 16 14 13 19 19 N 1.31518 * 120.00015 * 8.93569 * 18 16 14 20 20 Si 1.86795 * 120.00002 * 188.93137 * 18 16 14 21 21 H 1.48508 * 109.47185 * 185.00131 * 20 18 16 22 22 H 1.48507 * 109.47093 * 304.99832 * 20 18 16 23 23 H 1.48496 * 109.47236 * 65.00053 * 20 18 16 24 24 C 1.53000 * 109.47335 * 100.54711 * 14 13 12 25 25 N 1.46898 * 109.46823 * 194.83625 * 24 14 13 26 26 C 1.46901 * 109.47524 * 64.93386 * 25 24 14 27 27 C 1.46904 * 109.46857 * 184.93193 * 25 24 14 28 28 C 1.46898 * 109.47175 * 304.92808 * 25 24 14 29 29 H 1.08996 * 109.46927 * 175.05940 * 1 2 3 30 30 H 1.09006 * 109.46630 * 295.05889 * 1 2 3 31 31 H 1.08995 * 109.46944 * 55.05422 * 1 2 3 32 32 H 1.08995 * 109.47695 * 89.99255 * 8 7 6 33 33 H 1.08998 * 109.47627 * 210.00096 * 8 7 6 34 34 H 1.09003 * 109.46928 * 329.99548 * 8 7 6 35 35 H 0.96703 * 114.00099 * 270.02647 * 11 10 9 36 36 H 0.96996 * 119.99775 * 356.80726 * 19 18 16 37 37 H 1.09006 * 109.46924 * 314.83017 * 24 14 13 38 38 H 1.08994 * 109.47285 * 74.82877 * 24 14 13 39 39 H 1.08990 * 109.47311 * 63.31125 * 26 25 24 40 40 H 1.09004 * 109.46926 * 183.31120 * 26 25 24 41 41 H 1.09006 * 109.46687 * 303.30733 * 26 25 24 42 42 H 1.09004 * 109.46899 * 59.99568 * 27 25 24 43 43 H 1.08998 * 109.46990 * 180.02562 * 27 25 24 44 44 H 1.08995 * 109.47211 * 299.99726 * 27 25 24 45 45 H 1.08997 * 109.46970 * 70.01170 * 28 25 24 46 46 H 1.09005 * 109.47489 * 190.01339 * 28 25 24 47 47 H 1.09003 * 109.47020 * 310.01276 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2001 0.0000 4 8 1.4060 2.2167 0.0946 5 6 3.5366 1.2799 -0.1153 6 7 4.2609 0.1805 -0.3370 7 6 5.5688 0.2431 -0.4401 8 6 6.3415 -1.0263 -0.6901 9 7 6.2289 1.3815 -0.3319 10 6 5.5921 2.5224 -0.1181 11 8 6.2797 3.6862 -0.0150 12 6 4.1936 2.5070 0.0066 13 8 3.4999 3.6511 0.2322 14 6 3.2203 3.9825 1.5938 15 1 3.3147 3.0896 2.2118 16 6 1.8173 4.5219 1.7016 17 1 1.0993 4.0347 2.3447 18 6 1.4501 5.6374 0.9792 19 7 2.2615 6.1264 0.0669 20 14 -0.1997 6.4541 1.2961 21 1 -0.4061 7.5499 0.3152 22 1 -1.2846 5.4502 1.1524 23 1 -0.2200 7.0113 2.6724 24 6 4.2127 5.0430 2.0748 25 7 4.1664 5.1278 3.5406 26 6 4.6369 3.8623 4.1196 27 6 5.0306 6.2254 3.9950 28 6 2.7855 5.3808 3.9731 29 1 -0.3633 -1.0238 -0.0885 30 1 -0.3633 0.4353 0.9310 31 1 -0.3633 0.5886 -0.8423 32 1 6.4409 -1.1858 -1.7637 33 1 7.3316 -0.9432 -0.2419 34 1 5.8109 -1.8682 -0.2453 35 1 6.5545 3.9021 0.8867 36 1 3.1371 5.7306 -0.0656 37 1 5.2192 4.7688 1.7584 38 1 3.9478 6.0094 1.6463 39 1 5.6802 3.7037 3.8470 40 1 4.5471 3.9039 5.2051 41 1 4.0321 3.0404 3.7362 42 1 4.6816 7.1644 3.5654 43 1 4.9966 6.2881 5.0827 44 1 6.0553 6.0377 3.6742 45 1 2.1804 4.4919 3.7949 46 1 2.7757 5.6198 5.0365 47 1 2.3757 6.2184 3.4087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234564590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:11 Heat of formation + Delta-G solvation = 7.623386 kcal Electronic energy + Delta-G solvation = -33036.337986 eV Core-core repulsion = 28726.103036 eV Total energy + Delta-G solvation = -4310.234950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.13439 -42.58310 -41.21992 -39.60254 -38.82050 -37.48516 -35.62955 -34.70802 -33.16467 -31.44354 -29.77316 -29.65318 -29.28316 -28.79973 -27.57678 -26.56554 -24.83878 -24.22182 -22.86845 -22.33930 -20.39997 -20.09862 -19.63584 -19.35442 -18.40763 -17.97914 -17.88410 -17.75911 -17.57986 -17.44451 -16.89492 -15.84750 -15.78427 -15.54875 -15.24095 -15.00315 -14.71636 -14.57466 -14.35183 -14.18374 -13.88120 -13.67427 -13.49745 -13.40918 -13.39601 -13.30965 -13.23437 -13.09287 -13.04332 -12.83294 -12.68856 -12.50977 -12.31673 -12.09256 -11.96181 -11.92889 -11.83991 -11.69251 -10.90630 -10.68637 -10.33004 -10.20109 -8.64862 -6.47826 -1.05352 -0.60660 0.84638 1.13080 1.30630 1.45406 1.63930 1.72376 1.91182 2.19083 2.35793 2.49329 2.60087 2.83803 2.91056 2.97712 3.04221 3.27970 3.45638 3.56671 3.78874 3.79307 4.02893 4.08852 4.13120 4.19210 4.22086 4.26114 4.30304 4.39380 4.52980 4.58637 4.61365 4.63854 4.67114 4.70428 4.74688 4.75870 4.79437 5.13440 5.13617 5.21027 5.31898 5.51930 6.03604 6.14549 6.37549 6.47734 6.60259 6.69439 7.27968 8.73626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.348 6.348 3 C 0.496 3.504 4 O -0.453 6.453 5 C 0.111 3.889 6 N -0.475 5.475 7 C 0.317 3.683 8 C -0.083 4.083 9 N -0.505 5.505 10 C 0.347 3.653 11 O -0.457 6.457 12 C 0.038 3.962 13 O -0.309 6.309 14 C 0.179 3.821 15 H 0.053 0.947 16 C -0.575 4.575 17 H 0.065 0.935 18 C 0.024 3.976 19 N -0.896 5.896 20 Si 1.068 2.932 21 H -0.311 1.311 22 H -0.301 1.301 23 H -0.237 1.237 24 C -0.012 4.012 25 N -0.243 5.243 26 C -0.055 4.055 27 C -0.045 4.045 28 C -0.036 4.036 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.420 0.580 36 H 0.284 0.716 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.147 0.853 44 H 0.133 0.867 45 H 0.114 0.886 46 H 0.137 0.863 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.171 -2.504 17.946 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.264 6.264 3 C 0.336 3.664 4 O -0.336 6.336 5 C -0.033 4.033 6 N -0.195 5.195 7 C 0.050 3.950 8 C -0.141 4.141 9 N -0.233 5.233 10 C 0.154 3.846 11 O -0.267 6.267 12 C -0.014 4.014 13 O -0.223 6.223 14 C 0.126 3.874 15 H 0.071 0.929 16 C -0.611 4.611 17 H 0.083 0.917 18 C -0.184 4.184 19 N -0.532 5.532 20 Si 0.895 3.105 21 H -0.238 1.238 22 H -0.228 1.228 23 H -0.160 1.160 24 C -0.135 4.135 25 N 0.098 4.902 26 C -0.196 4.196 27 C -0.185 4.185 28 C -0.177 4.177 29 H 0.153 0.847 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.283 0.717 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.165 0.835 44 H 0.151 0.849 45 H 0.133 0.867 46 H 0.155 0.845 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.218 -1.503 16.675 19.614 hybrid contribution -0.254 -0.397 0.016 0.472 sum 9.963 -1.899 16.691 19.531 Atomic orbital electron populations 1.23576 0.74244 1.05709 1.02574 1.86620 1.24877 1.31081 1.83813 1.20736 0.87726 0.82543 0.75392 1.91179 1.65249 1.35668 1.41466 1.21064 0.92259 0.89613 1.00360 1.68345 1.08684 1.30118 1.12398 1.23751 0.86042 0.94145 0.91029 1.20798 0.99705 0.88872 1.04703 1.67845 1.42902 0.98432 1.14125 1.19861 0.85749 0.86087 0.92923 1.84918 1.74029 1.32040 1.35710 1.20960 0.91320 0.88697 1.00460 1.86748 1.70955 1.34050 1.30567 1.20902 0.94435 0.92769 0.79288 0.92903 1.22025 0.97116 1.11746 1.30206 0.91687 1.26102 1.04480 0.96285 0.91560 1.70903 1.09916 1.45367 1.27029 0.83540 0.73553 0.75289 0.78129 1.23774 1.22783 1.16030 1.24166 1.02974 1.07026 0.79311 1.45599 1.16155 1.15992 1.12466 1.24329 1.05356 0.84589 1.05283 1.24318 0.97398 0.89915 1.06867 1.24406 0.80378 1.08642 1.04319 0.84730 0.91451 0.92654 0.88334 0.87434 0.87969 0.71707 0.90232 0.86416 0.86726 0.84696 0.83105 0.89023 0.87480 0.83488 0.84870 0.86710 0.84485 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.59 113.37 1.20 1.37 16 2 O -0.35 -4.02 10.42 -56.03 -0.58 -4.60 16 3 C 0.50 7.43 7.94 70.40 0.56 7.99 16 4 O -0.45 -9.29 13.07 26.83 0.35 -8.94 16 5 C 0.11 1.32 6.79 41.83 0.28 1.60 16 6 N -0.48 -4.39 10.14 -177.16 -1.80 -6.19 16 7 C 0.32 1.51 7.64 138.81 1.06 2.57 16 8 C -0.08 0.25 10.31 71.24 0.73 0.99 16 9 N -0.51 -2.42 10.33 -300.43 -3.10 -5.53 16 10 C 0.35 1.56 7.86 85.14 0.67 2.23 16 11 O -0.46 0.54 12.76 -76.99 -0.98 -0.44 16 12 C 0.04 0.36 5.61 23.16 0.13 0.49 16 13 O -0.31 -3.82 6.28 -63.73 -0.40 -4.22 16 14 C 0.18 0.51 1.59 29.85 0.05 0.56 16 15 H 0.05 -0.04 5.46 -2.39 -0.01 -0.05 16 16 C -0.57 -6.41 3.96 25.60 0.10 -6.31 16 17 H 0.07 0.81 7.09 -2.91 -0.02 0.79 16 18 C 0.02 0.44 4.48 84.65 0.38 0.82 16 19 N -0.90 -21.03 12.75 21.45 0.27 -20.76 16 20 Si 1.07 17.41 29.91 68.60 2.05 19.47 16 21 H -0.31 -6.98 7.11 99.48 0.71 -6.28 16 22 H -0.30 -5.93 7.11 99.48 0.71 -5.23 16 23 H -0.24 -2.04 7.11 99.48 0.71 -1.33 16 24 C -0.01 0.11 3.54 86.30 0.31 0.42 16 25 N -0.24 5.30 0.05 ******* -0.07 5.23 16 26 C -0.05 1.46 7.83 127.69 1.00 2.46 16 27 C -0.05 1.28 7.99 127.69 1.02 2.30 16 28 C -0.04 0.61 6.69 127.69 0.85 1.46 16 29 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.05 0.41 8.10 -2.39 -0.02 0.39 16 32 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H 0.42 -6.34 7.26 -74.06 -0.54 -6.88 16 36 H 0.28 6.14 5.05 -92.71 -0.47 5.67 16 37 H 0.12 -1.86 5.45 -2.38 -0.01 -1.87 16 38 H 0.11 -0.27 5.91 -2.39 -0.01 -0.28 16 39 H 0.13 -4.23 8.11 -2.39 -0.02 -4.25 16 40 H 0.15 -4.90 8.13 -2.39 -0.02 -4.92 16 41 H 0.09 -1.89 5.88 -2.38 -0.01 -1.90 16 42 H 0.11 -2.65 8.11 -2.39 -0.02 -2.67 16 43 H 0.15 -5.00 8.07 -2.39 -0.02 -5.02 16 44 H 0.13 -4.30 8.13 -2.39 -0.02 -4.32 16 45 H 0.11 -1.28 5.33 -2.39 -0.01 -1.29 16 46 H 0.14 -3.48 7.99 -2.38 -0.02 -3.50 16 47 H 0.10 -0.94 6.98 -2.39 -0.02 -0.96 16 Total: 0.00 -57.33 371.62 4.87 -52.47 By element: Atomic # 1 Polarization: -46.23 SS G_CDS: 0.78 Total: -45.45 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 8.35 Total: 18.96 kcal Atomic # 7 Polarization: -22.55 SS G_CDS: -4.69 Total: -27.24 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -1.62 Total: -18.20 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: 2.05 Total: 19.47 kcal Total: -57.33 4.87 -52.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234564590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.090 kcal (2) G-P(sol) polarization free energy of solvation -57.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds