Wall clock time and date at job start Tue Mar 31 2020 22:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38397 * 119.55561 * 2 1 4 4 C 1.38675 * 119.34821 * 179.78637 * 3 2 1 5 5 C 1.38528 * 118.50085 * 0.48060 * 4 3 2 6 6 C 1.39237 * 119.06759 * 359.50068 * 5 4 3 7 7 C 1.48411 * 119.72021 * 180.25766 * 6 5 4 8 8 N 1.32542 * 119.18221 * 179.73384 * 7 6 5 9 9 C 1.32332 * 120.88933 * 179.71392 * 8 7 6 10 10 C 1.50700 * 120.36664 * 180.27634 * 9 8 7 11 11 C 1.38341 * 119.26368 * 0.54456 * 9 8 7 12 12 C 1.39481 * 118.50504 * 359.72871 * 11 9 8 13 13 O 1.35522 * 120.46940 * 180.02562 * 12 11 9 14 14 C 1.42905 * 116.99703 * 179.97438 * 13 12 11 15 15 C 1.53927 * 113.73160 * 246.73032 * 14 13 12 16 16 N 1.47956 * 86.18000 * 221.92116 * 15 14 13 17 17 C 1.46905 * 111.00433 * 137.58613 * 16 15 14 18 18 C 1.50698 * 109.47223 * 70.63672 * 17 16 15 19 19 H 1.07999 * 120.00160 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47297 * 60.00468 * 22 20 18 24 24 H 1.48506 * 109.47072 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47444 * 299.99831 * 22 20 18 26 26 C 1.47955 * 90.76573 * 24.68940 * 16 15 14 27 27 N 1.32542 * 119.18057 * 359.97438 * 7 6 5 28 28 N 1.31658 * 119.55257 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47472 * 269.98022 * 1 2 3 30 30 H 1.09005 * 109.46782 * 29.97716 * 1 2 3 31 31 H 1.08998 * 109.47248 * 149.97617 * 1 2 3 32 32 H 1.07998 * 120.32964 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.75315 * 180.25677 * 4 3 2 34 34 H 1.08002 * 120.47004 * 179.78298 * 5 4 3 35 35 H 1.09003 * 109.47285 * 270.26612 * 10 9 8 36 36 H 1.08998 * 109.47277 * 30.26960 * 10 9 8 37 37 H 1.09007 * 109.46915 * 150.27402 * 10 9 8 38 38 H 1.07997 * 120.75090 * 179.75219 * 11 9 8 39 39 H 1.09006 * 112.93748 * 18.43554 * 14 13 12 40 40 H 1.09004 * 113.76618 * 336.23691 * 15 14 13 41 41 H 1.09000 * 113.76045 * 107.60563 * 15 14 13 42 42 H 1.08998 * 109.47580 * 190.64497 * 17 16 15 43 43 H 1.09007 * 109.46653 * 310.64008 * 17 16 15 44 44 H 0.97005 * 120.00067 * 180.02562 * 21 20 18 45 45 H 1.08998 * 113.76655 * 220.99386 * 26 16 15 46 46 H 1.09000 * 113.76017 * 89.62336 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.2039 0.0000 4 6 3.5764 1.1989 0.0045 5 6 4.2330 -0.0209 -0.0013 6 6 3.4821 -1.1934 -0.0009 7 6 4.1706 -2.5081 -0.0013 8 7 3.4454 -3.6175 0.0046 9 6 4.0241 -4.8075 -0.0013 10 6 3.1880 -6.0613 -0.0008 11 6 5.4052 -4.8879 -0.0022 12 6 6.1409 -3.7029 -0.0026 13 8 7.4957 -3.7352 -0.0040 14 6 8.1746 -2.4777 -0.0050 15 6 8.9574 -2.1973 -1.3003 16 7 10.0294 -1.6777 -0.4229 17 6 11.3501 -2.1290 -0.8813 18 6 11.7030 -1.4260 -2.1666 19 1 11.0153 -0.7147 -2.5996 20 6 12.9040 -1.6909 -2.7900 21 7 13.7413 -2.5574 -2.2631 22 14 13.3417 -0.8189 -4.3829 23 1 13.3733 0.6476 -4.1519 24 1 14.6763 -1.2762 -4.8470 25 1 12.3236 -1.1355 -5.4166 26 6 9.5435 -2.5121 0.6982 27 7 5.4956 -2.5437 -0.0026 28 7 2.1563 -1.1453 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6478 2.1381 0.0004 33 1 4.1320 2.1250 0.0088 34 1 5.3122 -0.0619 -0.0016 35 1 2.9871 -6.3637 1.0270 36 1 2.2456 -5.8698 -0.5140 37 1 3.7266 -6.8574 -0.5150 38 1 5.9025 -5.8465 -0.0029 39 1 7.5387 -1.6514 0.3130 40 1 9.2363 -3.0972 -1.8486 41 1 8.5008 -1.4365 -1.9334 42 1 12.0973 -1.8960 -0.1226 43 1 11.3276 -3.2057 -1.0503 44 1 14.5864 -2.7435 -2.7014 45 1 9.5552 -2.0030 1.6619 46 1 9.9937 -3.5041 0.7345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234699923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:53 Heat of formation + Delta-G solvation = 85.917294 kcal Electronic energy + Delta-G solvation = -28163.965353 eV Core-core repulsion = 24248.497324 eV Total energy + Delta-G solvation = -3915.468029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45890 -40.30238 -39.55428 -37.36708 -34.68571 -33.21674 -33.06530 -32.81731 -31.38069 -29.44292 -28.69438 -27.80262 -25.79508 -25.41201 -25.14632 -23.23544 -22.52450 -22.06421 -21.22494 -19.56388 -18.53505 -17.54146 -16.75964 -16.48090 -16.32249 -15.95629 -15.83926 -15.56278 -15.23158 -14.85100 -14.55745 -14.34726 -14.20689 -14.02303 -13.43240 -13.39074 -13.24283 -13.03667 -12.65537 -12.51752 -12.51295 -12.40643 -12.14882 -12.03950 -11.96310 -11.62911 -10.99900 -10.88017 -10.75931 -10.56202 -10.32779 -10.30173 -9.96786 -9.76489 -9.71061 -9.43394 -9.33661 -9.23417 -8.71918 -8.54025 -7.93759 -6.09341 -4.11721 0.13280 1.01981 1.06166 1.36763 2.81229 3.24357 3.30213 3.32673 3.34076 3.37242 3.73545 3.88314 4.28357 4.37480 4.50591 4.58346 4.65451 4.69845 4.77127 4.82572 4.94105 4.99976 5.03484 5.26323 5.26884 5.29908 5.31327 5.32984 5.34825 5.40731 5.46078 5.58448 5.74666 5.76939 5.86083 5.94506 5.96986 6.04392 6.15225 6.30632 6.35269 6.41109 6.55691 6.83847 7.12954 7.25976 7.55305 7.68394 7.79944 7.99719 8.02330 8.33635 8.94783 9.52866 11.01811 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002523 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.606923 B =11094.475006 C =12644.999560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.121 3.879 3 C -0.157 4.157 4 C -0.079 4.079 5 C -0.124 4.124 6 C 0.175 3.825 7 C 0.403 3.597 8 N -0.508 5.508 9 C 0.195 3.805 10 C -0.102 4.102 11 C -0.247 4.247 12 C 0.378 3.622 13 O -0.286 6.286 14 C 0.046 3.954 15 C 0.014 3.986 16 N -0.471 5.471 17 C 0.164 3.836 18 C -0.513 4.513 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.003 3.997 27 N -0.565 5.565 28 N -0.441 5.441 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.001 0.999 44 H 0.263 0.737 45 H 0.088 0.912 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.049 0.219 6.751 26.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.178 4.178 4 C -0.104 4.104 5 C -0.146 4.146 6 C 0.038 3.962 7 C 0.136 3.864 8 N -0.227 5.227 9 C 0.052 3.948 10 C -0.160 4.160 11 C -0.270 4.270 12 C 0.191 3.809 13 O -0.188 6.188 14 C -0.010 4.010 15 C -0.115 4.115 16 N -0.196 5.196 17 C 0.038 3.962 18 C -0.552 4.552 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.126 4.126 27 N -0.296 5.296 28 N -0.151 5.151 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.172 0.828 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.384 0.622 6.808 27.255 hybrid contribution 1.622 -0.267 -1.026 1.937 sum -24.762 0.355 5.782 25.431 Atomic orbital electron populations 1.20700 0.88454 1.03564 1.03147 1.21301 0.97165 0.87766 0.95699 1.22156 0.95092 0.99396 1.01126 1.21626 0.94342 0.98409 0.96069 1.22219 1.02580 0.91727 0.98079 1.18625 0.88880 0.89304 0.99418 1.20324 0.84166 0.91217 0.90680 1.68313 1.40196 0.97487 1.16700 1.21572 0.90548 0.94035 0.88657 1.20757 0.99741 0.91673 1.03779 1.21892 0.94576 0.99056 1.11469 1.19994 0.85492 0.88876 0.86539 1.86429 1.12520 1.34743 1.85115 1.25099 0.92023 0.84187 0.99690 1.24174 0.92575 0.99921 0.94859 1.68601 1.04336 1.43788 1.02828 1.20224 0.85037 0.94411 0.96549 1.21030 1.03119 1.24348 1.06673 0.91989 1.24990 0.96224 0.95292 0.97982 1.69943 1.09832 1.34003 1.39809 0.86531 0.77478 0.80022 0.83227 1.20071 1.21247 1.20226 1.24253 0.91716 0.98474 0.98132 1.67747 1.10714 1.29167 1.21977 1.67345 1.08290 1.29335 1.10129 0.90387 0.90666 0.90272 0.84460 0.83974 0.83151 0.89550 0.89659 0.89932 0.82833 0.86219 0.90577 0.89672 0.94654 0.98087 0.92739 0.89342 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.17 36.00 0.37 -0.32 16 2 C 0.12 1.22 6.78 -82.61 -0.56 0.66 16 3 C -0.16 -1.31 9.74 -39.36 -0.38 -1.70 16 4 C -0.08 -0.72 10.17 -39.31 -0.40 -1.12 16 5 C -0.12 -1.46 9.60 -39.10 -0.38 -1.84 16 6 C 0.18 2.42 6.75 -82.95 -0.56 1.86 16 7 C 0.40 6.03 7.57 -156.99 -1.19 4.84 16 8 N -0.51 -7.30 10.03 -7.45 -0.07 -7.37 16 9 C 0.20 2.33 6.82 -82.34 -0.56 1.77 16 10 C -0.10 -0.78 10.21 36.01 0.37 -0.41 16 11 C -0.25 -3.07 9.80 -39.08 -0.38 -3.45 16 12 C 0.38 5.67 7.53 -16.73 -0.13 5.54 16 13 O -0.29 -4.62 10.15 -18.26 -0.19 -4.81 16 14 C 0.05 0.78 4.38 -25.80 -0.11 0.66 16 15 C 0.01 0.27 7.29 -2.77 -0.02 0.25 16 16 N -0.47 -10.22 6.25 -240.02 -1.50 -11.72 16 17 C 0.16 4.27 4.58 -4.97 -0.02 4.25 16 18 C -0.51 -14.48 8.84 -34.44 -0.30 -14.79 16 19 H 0.06 1.73 7.80 -52.49 -0.41 1.32 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.00 0.06 7.81 -2.77 -0.02 0.04 16 27 N -0.56 -8.58 7.73 -11.18 -0.09 -8.66 16 28 N -0.44 -5.84 9.94 -6.03 -0.06 -5.90 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.15 1.77 7.50 -52.49 -0.39 1.37 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.47 8.09 -51.92 -0.42 0.05 16 38 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.12 1.91 6.91 -51.93 -0.36 1.56 16 40 H 0.08 1.59 7.78 -51.93 -0.40 1.19 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.00 0.04 7.69 -51.93 -0.40 -0.36 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.07 1.34 7.79 -51.93 -0.40 0.94 16 LS Contribution 392.87 15.07 5.92 5.92 Total: -1.00 -33.26 392.87 -11.23 -44.48 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.57 Total: -0.52 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.38 Total: -2.23 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.99 Total: -59.51 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.19 Total: -4.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.26 -11.23 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234699923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.402 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds