Wall clock time and date at job start Tue Mar 31 2020 22:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38397 * 119.55561 * 2 1 4 4 C 1.38675 * 119.34821 * 179.78637 * 3 2 1 5 5 C 1.38528 * 118.50085 * 0.48060 * 4 3 2 6 6 C 1.39237 * 119.06759 * 359.50068 * 5 4 3 7 7 C 1.48411 * 119.72021 * 180.25766 * 6 5 4 8 8 N 1.32542 * 119.18221 * 179.73384 * 7 6 5 9 9 C 1.32332 * 120.88933 * 179.71392 * 8 7 6 10 10 C 1.50700 * 120.36664 * 180.27634 * 9 8 7 11 11 C 1.38341 * 119.26368 * 0.54456 * 9 8 7 12 12 C 1.39481 * 118.50504 * 359.72871 * 11 9 8 13 13 O 1.35522 * 120.46940 * 180.02562 * 12 11 9 14 14 C 1.42905 * 116.99703 * 179.97438 * 13 12 11 15 15 C 1.53927 * 113.73160 * 246.73032 * 14 13 12 16 16 N 1.47956 * 86.18000 * 221.92116 * 15 14 13 17 17 C 1.46905 * 111.00433 * 137.58613 * 16 15 14 18 18 C 1.50698 * 109.47223 * 70.63672 * 17 16 15 19 19 H 1.07999 * 120.00160 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99683 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47297 * 60.00468 * 22 20 18 24 24 H 1.48506 * 109.47072 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47444 * 299.99831 * 22 20 18 26 26 C 1.47955 * 90.76573 * 24.68940 * 16 15 14 27 27 N 1.32542 * 119.18057 * 359.97438 * 7 6 5 28 28 N 1.31658 * 119.55257 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47472 * 269.98022 * 1 2 3 30 30 H 1.09005 * 109.46782 * 29.97716 * 1 2 3 31 31 H 1.08998 * 109.47248 * 149.97617 * 1 2 3 32 32 H 1.07998 * 120.32964 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.75315 * 180.25677 * 4 3 2 34 34 H 1.08002 * 120.47004 * 179.78298 * 5 4 3 35 35 H 1.09003 * 109.47285 * 270.26612 * 10 9 8 36 36 H 1.08998 * 109.47277 * 30.26960 * 10 9 8 37 37 H 1.09007 * 109.46915 * 150.27402 * 10 9 8 38 38 H 1.07997 * 120.75090 * 179.75219 * 11 9 8 39 39 H 1.09006 * 112.93748 * 18.43554 * 14 13 12 40 40 H 1.09004 * 113.76618 * 336.23691 * 15 14 13 41 41 H 1.09000 * 113.76045 * 107.60563 * 15 14 13 42 42 H 1.08998 * 109.47580 * 190.64497 * 17 16 15 43 43 H 1.09007 * 109.46653 * 310.64008 * 17 16 15 44 44 H 0.97005 * 120.00067 * 180.02562 * 21 20 18 45 45 H 1.08998 * 113.76655 * 220.99386 * 26 16 15 46 46 H 1.09000 * 113.76017 * 89.62336 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.2039 0.0000 4 6 3.5764 1.1989 0.0045 5 6 4.2330 -0.0209 -0.0013 6 6 3.4821 -1.1934 -0.0009 7 6 4.1706 -2.5081 -0.0013 8 7 3.4454 -3.6175 0.0046 9 6 4.0241 -4.8075 -0.0013 10 6 3.1880 -6.0613 -0.0008 11 6 5.4052 -4.8879 -0.0022 12 6 6.1409 -3.7029 -0.0026 13 8 7.4957 -3.7352 -0.0040 14 6 8.1746 -2.4777 -0.0050 15 6 8.9574 -2.1973 -1.3003 16 7 10.0294 -1.6777 -0.4229 17 6 11.3501 -2.1290 -0.8813 18 6 11.7030 -1.4260 -2.1666 19 1 11.0153 -0.7147 -2.5996 20 6 12.9040 -1.6909 -2.7900 21 7 13.7413 -2.5574 -2.2631 22 14 13.3417 -0.8189 -4.3829 23 1 13.3733 0.6476 -4.1519 24 1 14.6763 -1.2762 -4.8470 25 1 12.3236 -1.1355 -5.4166 26 6 9.5435 -2.5121 0.6982 27 7 5.4956 -2.5437 -0.0026 28 7 2.1563 -1.1453 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6478 2.1381 0.0004 33 1 4.1320 2.1250 0.0088 34 1 5.3122 -0.0619 -0.0016 35 1 2.9871 -6.3637 1.0270 36 1 2.2456 -5.8698 -0.5140 37 1 3.7266 -6.8574 -0.5150 38 1 5.9025 -5.8465 -0.0029 39 1 7.5387 -1.6514 0.3130 40 1 9.2363 -3.0972 -1.8486 41 1 8.5008 -1.4365 -1.9334 42 1 12.0973 -1.8960 -0.1226 43 1 11.3276 -3.2057 -1.0503 44 1 14.5864 -2.7435 -2.7014 45 1 9.5552 -2.0030 1.6619 46 1 9.9937 -3.5041 0.7345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234699923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:53 Heat of formation + Delta-G solvation = 62.475147 kcal Electronic energy + Delta-G solvation = -28164.981881 eV Core-core repulsion = 24248.497324 eV Total energy + Delta-G solvation = -3916.484557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50786 -41.28977 -40.82769 -38.73939 -35.59222 -35.07201 -34.02823 -33.81831 -32.32872 -31.16357 -29.63085 -28.55367 -27.45480 -26.92592 -26.27239 -24.49296 -23.42382 -23.32588 -22.39222 -21.06378 -19.71838 -18.66292 -18.55036 -17.64026 -17.21865 -17.16765 -16.89992 -16.60958 -16.54609 -16.28506 -15.92842 -15.73258 -15.31257 -14.82641 -14.75624 -14.27026 -14.23678 -13.94852 -13.90661 -13.83682 -13.78251 -13.37415 -13.16995 -13.15345 -13.03376 -12.83966 -12.75256 -12.63495 -12.29573 -11.94349 -11.91377 -11.61296 -11.27150 -11.19723 -10.86011 -10.69140 -10.59798 -10.42136 -10.38504 -9.76040 -9.61356 -8.27319 -6.38309 -0.79127 0.02096 0.25636 0.48787 1.37873 1.41041 1.49116 1.63444 2.26759 2.36379 2.42739 2.82112 2.95123 3.05137 3.09308 3.33525 3.48709 3.58090 3.79496 3.90141 3.97083 4.05502 4.09039 4.17038 4.20975 4.25931 4.41944 4.52819 4.56140 4.62494 4.67223 4.73055 4.75324 4.79394 4.82071 4.84501 4.85132 4.90940 5.05718 5.17913 5.19861 5.23152 5.34001 5.44355 5.67597 5.69237 5.78937 6.00900 6.05542 6.27795 6.75156 6.81612 7.03622 7.31399 8.84220 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011975 B = 0.002523 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.606923 B =11094.475006 C =12644.999560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.107 3.893 3 C -0.144 4.144 4 C -0.077 4.077 5 C -0.137 4.137 6 C 0.144 3.856 7 C 0.388 3.612 8 N -0.525 5.525 9 C 0.194 3.806 10 C -0.098 4.098 11 C -0.244 4.244 12 C 0.353 3.647 13 O -0.293 6.293 14 C 0.073 3.927 15 C 0.010 3.990 16 N -0.482 5.482 17 C 0.179 3.821 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.268 1.268 26 C 0.005 3.995 27 N -0.576 5.576 28 N -0.470 5.470 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.142 0.858 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.179 0.821 39 H 0.130 0.870 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.010 0.990 43 H -0.023 1.023 44 H 0.267 0.733 45 H 0.113 0.887 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.227 1.370 6.456 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.033 4.033 3 C -0.164 4.164 4 C -0.103 4.103 5 C -0.159 4.159 6 C 0.007 3.993 7 C 0.122 3.878 8 N -0.244 5.244 9 C 0.050 3.950 10 C -0.155 4.155 11 C -0.266 4.266 12 C 0.167 3.833 13 O -0.196 6.196 14 C 0.016 3.984 15 C -0.119 4.119 16 N -0.206 5.206 17 C 0.052 3.948 18 C -0.571 4.571 19 H 0.079 0.921 20 C -0.195 4.195 21 N -0.571 5.571 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.193 1.193 26 C -0.124 4.124 27 N -0.307 5.307 28 N -0.181 5.181 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.195 0.805 33 H 0.189 0.811 34 H 0.160 0.840 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.196 0.804 39 H 0.148 0.852 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.028 0.972 43 H -0.006 1.006 44 H 0.075 0.925 45 H 0.131 0.869 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.589 1.767 6.524 29.377 hybrid contribution 2.130 -0.625 -0.882 2.389 sum -26.459 1.142 5.642 27.078 Atomic orbital electron populations 1.20796 0.86206 1.04456 1.04082 1.21976 0.98739 0.87705 0.94908 1.22591 0.94863 1.00318 0.98614 1.22007 0.95069 0.98363 0.94835 1.22271 1.02267 0.92456 0.98910 1.18730 0.89539 0.89357 1.01651 1.20723 0.84151 0.92224 0.90700 1.68397 1.40642 0.98203 1.17175 1.22307 0.90913 0.94731 0.87046 1.20906 0.99282 0.90114 1.05186 1.22205 0.94753 0.99189 1.10485 1.20312 0.84948 0.90012 0.88048 1.86394 1.13552 1.33890 1.85784 1.24648 0.91688 0.85041 0.97026 1.24147 0.92520 0.99239 0.95960 1.68485 1.02780 1.44755 1.04627 1.19876 0.86874 0.92687 0.95340 1.21347 1.03500 1.24580 1.07641 0.92144 1.25924 0.96013 0.95923 1.01635 1.70065 1.10286 1.35256 1.41458 0.85422 0.77442 0.78998 0.78702 1.19161 1.20523 1.19341 1.24309 0.92006 0.97954 0.98106 1.67690 1.11106 1.29441 1.22511 1.67314 1.08194 1.31261 1.11376 0.89308 0.87839 0.91310 0.80514 0.81111 0.84006 0.87809 0.89583 0.87528 0.80392 0.85210 0.92356 0.89269 0.97202 1.00555 0.92468 0.86919 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.17 71.23 0.72 -0.39 16 2 C 0.11 2.00 6.78 42.62 0.29 2.29 16 3 C -0.14 -2.00 9.74 22.41 0.22 -1.78 16 4 C -0.08 -1.26 10.17 22.44 0.23 -1.04 16 5 C -0.14 -3.23 9.60 22.58 0.22 -3.02 16 6 C 0.14 4.06 6.75 41.97 0.28 4.34 16 7 C 0.39 11.95 7.57 137.60 1.04 12.99 16 8 N -0.52 -15.21 10.03 -177.47 -1.78 -16.99 16 9 C 0.19 4.48 6.82 42.51 0.29 4.77 16 10 C -0.10 -1.30 10.21 71.24 0.73 -0.58 16 11 C -0.24 -5.89 9.80 22.59 0.22 -5.67 16 12 C 0.35 10.67 7.53 84.87 0.64 11.31 16 13 O -0.29 -9.58 10.15 -88.25 -0.90 -10.47 16 14 C 0.07 2.46 4.38 31.24 0.14 2.60 16 15 C 0.01 0.42 7.29 86.40 0.63 1.05 16 16 N -0.48 -21.46 6.25 -916.50 -5.73 -27.19 16 17 C 0.18 9.72 4.58 85.56 0.39 10.11 16 18 C -0.53 -30.73 8.84 25.60 0.23 -30.50 16 19 H 0.06 3.43 7.80 -2.91 -0.02 3.40 16 20 C 0.00 0.21 5.46 84.65 0.46 0.68 16 21 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 22 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.00 0.18 7.81 86.41 0.67 0.85 16 27 N -0.58 -17.94 7.73 -302.03 -2.34 -20.28 16 28 N -0.47 -12.47 9.94 -172.99 -1.72 -14.19 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.57 8.08 -2.38 -0.02 0.55 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 33 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.14 3.45 7.50 -2.91 -0.02 3.43 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 0.92 8.09 -2.38 -0.02 0.90 16 38 H 0.18 3.27 8.06 -2.91 -0.02 3.24 16 39 H 0.13 4.17 6.91 -2.38 -0.02 4.15 16 40 H 0.06 2.55 7.78 -2.39 -0.02 2.53 16 41 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H -0.02 -1.35 7.69 -2.38 -0.02 -1.37 16 44 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 45 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.07 2.57 7.79 -2.39 -0.02 2.56 16 Total: -1.00 -75.00 392.87 -1.76 -76.76 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.99 Total: 13.74 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 7.40 Total: 8.01 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -11.28 Total: -134.65 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.90 Total: -10.47 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -75.00 -1.76 -76.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234699923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.231 kcal (2) G-P(sol) polarization free energy of solvation -74.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds