Wall clock time and date at job start Tue Mar 31 2020 23:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38549 * 120.01258 * 2 1 4 4 C 1.40077 * 117.81558 * 180.02562 * 3 2 1 5 5 C 1.48132 * 121.14563 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99928 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00225 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47412 * 179.97438 * 8 7 5 10 10 C 1.38231 * 120.00232 * 269.73041 * 9 8 7 11 11 C 1.38241 * 119.99836 * 179.76493 * 10 9 8 12 12 C 1.38228 * 119.99947 * 0.48336 * 11 10 9 13 13 C 1.50706 * 120.00059 * 179.76403 * 12 11 10 14 14 C 1.52994 * 109.47328 * 270.02849 * 13 12 11 15 15 N 1.46505 * 109.46780 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99547 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99597 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00424 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 89.99424 * 20 18 16 22 22 H 1.48498 * 109.47190 * 210.00252 * 20 18 16 23 23 H 1.48505 * 109.47041 * 329.99933 * 20 18 16 24 24 C 1.38235 * 120.00069 * 359.79541 * 12 11 10 25 25 C 1.38229 * 120.00193 * 359.95120 * 24 12 11 26 26 C 1.39772 * 117.70623 * 0.02562 * 4 3 2 27 27 N 1.31886 * 119.65777 * 359.97438 * 26 4 3 28 28 N 1.28284 * 122.32918 * 359.97438 * 27 26 4 29 29 H 1.08998 * 109.47434 * 269.97597 * 1 2 3 30 30 H 1.09001 * 109.46885 * 29.98003 * 1 2 3 31 31 H 1.09004 * 109.47045 * 149.97737 * 1 2 3 32 32 H 1.07992 * 121.09374 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00285 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.47210 * 300.00729 * 8 7 5 35 35 H 1.09000 * 109.46746 * 60.00146 * 8 7 5 36 36 H 1.07995 * 120.00047 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.99952 * 180.25525 * 11 10 9 38 38 H 1.09004 * 109.46607 * 30.02548 * 13 12 11 39 39 H 1.08998 * 109.46729 * 150.02376 * 13 12 11 40 40 H 1.09004 * 109.47030 * 299.99439 * 14 13 12 41 41 H 1.09000 * 109.47269 * 59.99648 * 14 13 12 42 42 H 0.96995 * 120.00099 * 359.97438 * 15 14 13 43 43 H 0.96994 * 120.00399 * 180.02562 * 19 18 16 44 44 H 1.08001 * 119.99764 * 179.97438 * 24 12 11 45 45 H 1.08000 * 120.00037 * 180.02562 * 25 24 12 46 46 H 1.08003 * 120.16545 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3835 0.0000 6 8 3.8688 3.4695 0.0004 7 7 5.7594 2.3049 -0.0011 8 6 6.5647 3.5288 -0.0011 9 6 8.0277 3.1675 -0.0018 10 6 8.7006 3.0070 1.1950 11 6 10.0415 2.6709 1.1943 12 6 10.7118 2.5050 -0.0031 13 6 12.1750 2.1438 -0.0039 14 6 13.0159 3.4219 -0.0038 15 7 14.4382 3.0705 -0.0052 16 6 15.3872 4.0577 -0.0048 17 1 15.0873 5.0952 -0.0039 18 6 16.7348 3.7249 -0.0056 19 7 17.1005 2.4605 -0.0061 20 14 18.0295 5.0714 -0.0043 21 1 18.3729 5.4267 1.3960 22 1 19.2464 4.5888 -0.7053 23 1 17.4984 6.2695 -0.7029 24 6 10.0403 2.6712 -1.2000 25 6 8.6983 3.0022 -1.1993 26 6 4.2017 -0.1154 -0.0016 27 7 3.4484 -1.1980 -0.0016 28 7 2.1668 -1.1419 -0.0001 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6782 2.1452 0.0004 33 1 6.1946 1.4381 -0.0026 34 1 6.3344 4.1152 -0.8906 35 1 6.3358 4.1143 0.8893 36 1 8.1779 3.1409 2.1305 37 1 10.5662 2.5414 2.1294 38 1 12.4048 1.5575 0.8859 39 1 12.4040 1.5581 -0.8941 40 1 12.7860 4.0081 -0.8936 41 1 12.7867 4.0076 0.8864 42 1 14.7076 2.1388 -0.0056 43 1 18.0421 2.2279 -0.0062 44 1 10.5642 2.5420 -2.1355 45 1 8.1736 3.1316 -2.1344 46 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266083877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:13 Heat of formation + Delta-G solvation = 49.488368 kcal Electronic energy + Delta-G solvation = -26621.298349 eV Core-core repulsion = 22704.250643 eV Total energy + Delta-G solvation = -3917.047706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83423 -40.19836 -39.37026 -36.04140 -35.01702 -34.51843 -33.89877 -32.78152 -31.02965 -30.94891 -28.92460 -28.73542 -26.45808 -24.97977 -24.33799 -23.41361 -22.82425 -21.66122 -21.24546 -20.55508 -18.79328 -18.22054 -17.21520 -16.97151 -16.31636 -16.26693 -15.86514 -15.78347 -15.24335 -15.11343 -14.87797 -14.67303 -14.16512 -13.93943 -13.73268 -13.59058 -13.56771 -13.44765 -13.32043 -13.01843 -12.87579 -12.62677 -12.42984 -11.59081 -11.30033 -11.28685 -11.18219 -10.99628 -10.92349 -10.82948 -10.73558 -10.64238 -10.37559 -10.20143 -10.09504 -9.74533 -9.67913 -9.01663 -8.89033 -8.66559 -6.95528 -5.78910 -3.08082 -0.27816 0.22969 1.07119 1.32418 2.16763 2.50611 3.01042 3.33434 3.42327 3.47395 3.49165 3.62924 3.70269 3.85288 3.98065 4.18664 4.33560 4.50287 4.57181 4.64812 4.72749 4.88753 4.92951 4.96903 5.01568 5.06015 5.19718 5.27984 5.35568 5.41474 5.47613 5.55039 5.55293 5.70505 5.74398 5.79208 5.85942 6.00553 6.14073 6.23378 6.38118 6.38901 6.55126 6.76978 6.81832 6.88120 6.91803 7.48293 7.68046 8.05418 8.39870 9.51076 10.08001 10.42889 11.43973 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.001461 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.920891 B =19154.783007 C =19678.315332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.068 3.932 3 C -0.058 4.058 4 C -0.128 4.128 5 C 0.562 3.438 6 O -0.524 6.524 7 N -0.713 5.713 8 C 0.166 3.834 9 C -0.133 4.133 10 C -0.097 4.097 11 C -0.118 4.118 12 C -0.049 4.049 13 C -0.096 4.096 14 C 0.161 3.839 15 N -0.734 5.734 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.118 4.118 25 C -0.097 4.097 26 C 0.063 3.937 27 N -0.235 5.235 28 N -0.228 5.228 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.404 0.596 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.553 -4.050 0.005 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.076 4.076 3 C -0.088 4.088 4 C -0.142 4.142 5 C 0.347 3.653 6 O -0.400 6.400 7 N -0.365 5.365 8 C 0.044 3.956 9 C -0.133 4.133 10 C -0.116 4.116 11 C -0.136 4.136 12 C -0.049 4.049 13 C -0.133 4.133 14 C 0.033 3.967 15 N -0.378 5.378 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.136 4.136 25 C -0.116 4.116 26 C -0.102 4.102 27 N -0.074 5.074 28 N -0.072 5.072 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.181 0.819 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -33.895 -4.735 -0.005 34.225 hybrid contribution 1.403 1.611 0.024 2.137 sum -32.492 -3.124 0.019 32.642 Atomic orbital electron populations 1.20747 0.86658 1.04572 1.04122 1.23016 0.99588 0.89795 0.95246 1.22528 0.93098 1.00799 0.92339 1.21247 0.95334 0.95169 1.02491 1.17901 0.82270 0.87962 0.77215 1.90819 1.71797 1.28376 1.49052 1.46047 1.05295 1.10831 1.74288 1.20252 0.86130 0.85748 1.03488 1.19647 0.94487 1.05255 0.93921 1.21018 0.94601 0.98783 0.97151 1.21140 0.94162 1.00118 0.98180 1.20116 0.96131 0.95754 0.92930 1.20891 0.89516 0.99642 1.03273 1.20583 0.85003 0.93012 0.98054 1.42367 0.99138 1.06727 1.89615 1.19235 0.86652 0.88545 1.42777 0.91167 1.24745 0.97049 0.96206 1.02940 1.69655 1.15672 1.15159 1.57745 0.86180 0.81482 0.80928 0.77553 1.21676 1.21711 1.20735 1.21138 0.94138 1.00130 0.98188 1.21019 0.94598 0.98802 0.97145 1.24555 1.02615 0.88790 0.94289 1.73093 0.99190 1.26719 1.08438 1.72879 1.01874 1.24987 1.07448 0.89377 0.89797 0.89480 0.81861 0.76048 0.90159 0.90165 0.86102 0.85604 0.90711 0.90708 0.96251 0.96256 0.78267 0.93482 0.85604 0.86102 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.19 36.01 0.37 0.02 16 2 C 0.07 0.46 6.86 -82.46 -0.57 -0.11 16 3 C -0.06 -0.38 9.43 -38.78 -0.37 -0.75 16 4 C -0.13 -0.93 5.92 -104.57 -0.62 -1.55 16 5 C 0.56 4.70 7.80 -12.20 -0.10 4.61 16 6 O -0.52 -6.03 16.49 5.35 0.09 -5.94 16 7 N -0.71 -4.81 5.51 -62.34 -0.34 -5.16 16 8 C 0.17 1.28 5.80 -5.19 -0.03 1.25 16 9 C -0.13 -1.17 5.25 -104.63 -0.55 -1.72 16 10 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 11 C -0.12 -1.35 9.70 -39.58 -0.38 -1.74 16 12 C -0.05 -0.62 5.13 -104.62 -0.54 -1.16 16 13 C -0.10 -1.48 5.46 -27.88 -0.15 -1.63 16 14 C 0.16 3.20 6.24 -4.04 -0.03 3.18 16 15 N -0.73 -18.59 5.60 -59.91 -0.34 -18.93 16 16 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 20 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 C -0.12 -1.35 9.70 -39.59 -0.38 -1.74 16 25 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 26 C 0.06 0.44 10.84 -16.96 -0.18 0.26 16 27 N -0.23 -2.24 11.49 30.78 0.35 -1.89 16 28 N -0.23 -2.14 11.40 33.58 0.38 -1.76 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.13 8.09 -51.93 -0.42 -0.29 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.16 0.84 7.80 -52.49 -0.41 0.43 16 33 H 0.40 1.98 6.62 -40.82 -0.27 1.71 16 34 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 35 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.38 10.11 7.67 -40.82 -0.31 9.80 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.18 0.70 6.54 -52.48 -0.34 0.36 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -34.63 397.64 -9.06 -43.69 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.36 Total: 5.20 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -4.54 Total: -11.11 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.78 Total: -55.18 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: 0.09 Total: -5.94 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.63 -9.06 -43.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266083877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.177 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds