Wall clock time and date at job start Tue Mar 31 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38549 * 120.01258 * 2 1 4 4 C 1.40077 * 117.81558 * 180.02562 * 3 2 1 5 5 C 1.48132 * 121.14563 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99928 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00029 * 180.02562 * 5 4 3 8 8 C 1.46503 * 120.00225 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47412 * 179.97438 * 8 7 5 10 10 C 1.38231 * 120.00232 * 269.73041 * 9 8 7 11 11 C 1.38241 * 119.99836 * 179.76493 * 10 9 8 12 12 C 1.38228 * 119.99947 * 0.48336 * 11 10 9 13 13 C 1.50706 * 120.00059 * 179.76403 * 12 11 10 14 14 C 1.52994 * 109.47328 * 270.02849 * 13 12 11 15 15 N 1.46505 * 109.46780 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99547 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99597 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00424 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00035 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 89.99424 * 20 18 16 22 22 H 1.48498 * 109.47190 * 210.00252 * 20 18 16 23 23 H 1.48505 * 109.47041 * 329.99933 * 20 18 16 24 24 C 1.38235 * 120.00069 * 359.79541 * 12 11 10 25 25 C 1.38229 * 120.00193 * 359.95120 * 24 12 11 26 26 C 1.39772 * 117.70623 * 0.02562 * 4 3 2 27 27 N 1.31886 * 119.65777 * 359.97438 * 26 4 3 28 28 N 1.28284 * 122.32918 * 359.97438 * 27 26 4 29 29 H 1.08998 * 109.47434 * 269.97597 * 1 2 3 30 30 H 1.09001 * 109.46885 * 29.98003 * 1 2 3 31 31 H 1.09004 * 109.47045 * 149.97737 * 1 2 3 32 32 H 1.07992 * 121.09374 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00285 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.47210 * 300.00729 * 8 7 5 35 35 H 1.09000 * 109.46746 * 60.00146 * 8 7 5 36 36 H 1.07995 * 120.00047 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.99952 * 180.25525 * 11 10 9 38 38 H 1.09004 * 109.46607 * 30.02548 * 13 12 11 39 39 H 1.08998 * 109.46729 * 150.02376 * 13 12 11 40 40 H 1.09004 * 109.47030 * 299.99439 * 14 13 12 41 41 H 1.09000 * 109.47269 * 59.99648 * 14 13 12 42 42 H 0.96995 * 120.00099 * 359.97438 * 15 14 13 43 43 H 0.96994 * 120.00399 * 180.02562 * 19 18 16 44 44 H 1.08001 * 119.99764 * 179.97438 * 24 12 11 45 45 H 1.08000 * 120.00037 * 180.02562 * 25 24 12 46 46 H 1.08003 * 120.16545 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5997 1.1460 -0.0006 5 6 4.4139 2.3835 0.0000 6 8 3.8688 3.4695 0.0004 7 7 5.7594 2.3049 -0.0011 8 6 6.5647 3.5288 -0.0011 9 6 8.0277 3.1675 -0.0018 10 6 8.7006 3.0070 1.1950 11 6 10.0415 2.6709 1.1943 12 6 10.7118 2.5050 -0.0031 13 6 12.1750 2.1438 -0.0039 14 6 13.0159 3.4219 -0.0038 15 7 14.4382 3.0705 -0.0052 16 6 15.3872 4.0577 -0.0048 17 1 15.0873 5.0952 -0.0039 18 6 16.7348 3.7249 -0.0056 19 7 17.1005 2.4605 -0.0061 20 14 18.0295 5.0714 -0.0043 21 1 18.3729 5.4267 1.3960 22 1 19.2464 4.5888 -0.7053 23 1 17.4984 6.2695 -0.7029 24 6 10.0403 2.6712 -1.2000 25 6 8.6983 3.0022 -1.1993 26 6 4.2017 -0.1154 -0.0016 27 7 3.4484 -1.1980 -0.0016 28 7 2.1668 -1.1419 -0.0001 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6782 2.1452 0.0004 33 1 6.1946 1.4381 -0.0026 34 1 6.3344 4.1152 -0.8906 35 1 6.3358 4.1143 0.8893 36 1 8.1779 3.1409 2.1305 37 1 10.5662 2.5414 2.1294 38 1 12.4048 1.5575 0.8859 39 1 12.4040 1.5581 -0.8941 40 1 12.7860 4.0081 -0.8936 41 1 12.7867 4.0076 0.8864 42 1 14.7076 2.1388 -0.0056 43 1 18.0421 2.2279 -0.0062 44 1 10.5642 2.5420 -2.1355 45 1 8.1736 3.1316 -2.1344 46 1 5.2781 -0.2031 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266083877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:12 Heat of formation + Delta-G solvation = 27.015513 kcal Electronic energy + Delta-G solvation = -26622.272845 eV Core-core repulsion = 22704.250643 eV Total energy + Delta-G solvation = -3918.022202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39390 -40.90883 -40.17422 -37.25248 -36.21121 -35.07638 -34.63565 -34.08589 -32.50125 -31.84424 -30.00172 -29.31980 -27.48007 -25.99091 -25.09746 -24.65920 -23.64356 -23.12074 -21.85885 -21.56804 -19.39051 -19.22732 -18.75975 -17.53646 -17.02361 -16.97092 -16.81918 -16.54743 -16.49909 -15.98443 -15.85779 -15.52194 -15.38861 -15.08561 -15.00534 -14.68724 -14.44159 -14.29115 -13.86076 -13.75428 -13.65661 -13.51523 -13.25171 -12.96393 -12.87487 -12.53305 -12.37334 -12.17321 -12.10142 -12.02244 -11.80587 -11.74385 -11.68367 -11.41356 -10.95914 -10.87005 -10.78665 -10.30118 -9.82123 -9.57778 -9.03607 -7.97406 -5.27189 -0.84030 -0.26288 0.23539 0.50652 1.46975 1.48735 1.54873 1.57352 1.87460 2.45820 2.54524 2.83016 2.87834 3.16633 3.36102 3.36304 3.45940 3.59524 3.71722 3.81624 3.87661 4.10435 4.14482 4.17525 4.31560 4.37720 4.45111 4.49247 4.56214 4.61167 4.68377 4.73862 4.74443 4.78390 4.83336 4.98091 5.06374 5.11195 5.14145 5.25171 5.25324 5.26688 5.45109 5.49449 5.60299 5.78866 6.06518 6.24851 6.25299 6.88501 7.31220 7.50499 8.05702 8.29910 9.26002 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.001461 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.920891 B =19154.783007 C =19678.315332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.069 3.931 3 C -0.056 4.056 4 C -0.134 4.134 5 C 0.568 3.432 6 O -0.557 6.557 7 N -0.701 5.701 8 C 0.170 3.830 9 C -0.118 4.118 10 C -0.094 4.094 11 C -0.127 4.127 12 C -0.070 4.070 13 C -0.080 4.080 14 C 0.162 3.838 15 N -0.748 5.748 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.270 1.270 24 C -0.127 4.127 25 C -0.094 4.094 26 C 0.068 3.932 27 N -0.267 5.267 28 N -0.259 5.259 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.178 0.822 33 H 0.414 0.586 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.375 0.625 43 H 0.252 0.748 44 H 0.126 0.874 45 H 0.142 0.858 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.398 -2.953 0.010 35.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.077 4.077 3 C -0.086 4.086 4 C -0.148 4.148 5 C 0.353 3.647 6 O -0.436 6.436 7 N -0.353 5.353 8 C 0.048 3.952 9 C -0.118 4.118 10 C -0.112 4.112 11 C -0.145 4.145 12 C -0.070 4.070 13 C -0.118 4.118 14 C 0.035 3.965 15 N -0.390 5.390 16 C -0.383 4.383 17 H 0.092 0.908 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.195 1.195 24 C -0.145 4.145 25 C -0.112 4.112 26 C -0.098 4.098 27 N -0.106 5.106 28 N -0.102 5.102 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.196 0.804 33 H 0.252 0.748 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.160 0.840 37 H 0.144 0.856 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.207 0.793 43 H 0.061 0.939 44 H 0.144 0.856 45 H 0.160 0.840 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -35.763 -3.655 0.000 35.949 hybrid contribution 1.841 1.306 0.025 2.257 sum -33.922 -2.349 0.025 34.003 Atomic orbital electron populations 1.20889 0.84359 1.05600 1.05180 1.23481 1.01041 0.89094 0.94040 1.22789 0.93082 1.01386 0.91307 1.21218 0.95650 0.94788 1.03149 1.17948 0.82510 0.87680 0.76527 1.90807 1.72424 1.29517 1.50852 1.45920 1.04836 1.11181 1.73392 1.20195 0.85203 0.86010 1.03827 1.19747 0.94961 1.03666 0.93460 1.21224 0.93797 0.97788 0.98386 1.21222 0.95128 1.00447 0.97679 1.19912 0.94627 0.98257 0.94240 1.20648 0.90918 0.97254 1.02991 1.20701 0.82974 0.95300 0.97488 1.42592 1.01071 1.05858 1.89527 1.19637 0.87606 0.89327 1.41702 0.90803 1.25584 0.99150 0.98424 1.03387 1.69809 1.15740 1.17096 1.59248 0.85127 0.78500 0.78517 0.77541 1.21246 1.21941 1.19460 1.21221 0.95106 1.00461 0.97688 1.21224 0.93793 0.97801 0.98378 1.24875 1.03622 0.88104 0.93242 1.73011 0.99677 1.28030 1.09889 1.72798 1.02154 1.26513 1.08758 0.88151 0.87690 0.89518 0.80415 0.74811 0.89906 0.89913 0.84028 0.85600 0.91011 0.91008 0.96468 0.96455 0.79320 0.93877 0.85599 0.84024 0.78269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 71.24 0.73 0.22 16 2 C 0.07 0.85 6.86 42.63 0.29 1.14 16 3 C -0.06 -0.65 9.43 22.79 0.22 -0.43 16 4 C -0.13 -1.74 5.92 -19.83 -0.12 -1.86 16 5 C 0.57 8.37 7.80 86.87 0.68 9.05 16 6 O -0.56 -11.85 16.49 -3.76 -0.06 -11.91 16 7 N -0.70 -7.65 5.51 -469.44 -2.59 -10.23 16 8 C 0.17 2.14 5.80 85.63 0.50 2.64 16 9 C -0.12 -1.76 5.25 -19.87 -0.10 -1.86 16 10 C -0.09 -1.55 9.70 22.27 0.22 -1.34 16 11 C -0.13 -2.75 9.70 22.27 0.22 -2.53 16 12 C -0.07 -1.74 5.13 -19.87 -0.10 -1.84 16 13 C -0.08 -2.51 5.46 29.85 0.16 -2.35 16 14 C 0.16 6.50 6.24 86.38 0.54 7.04 16 15 N -0.75 -38.49 5.60 -343.45 -1.92 -40.42 16 16 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 19 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 20 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.13 -2.75 9.70 22.27 0.22 -2.53 16 25 C -0.09 -1.55 9.70 22.27 0.22 -1.34 16 26 C 0.07 0.86 10.84 85.06 0.92 1.78 16 27 N -0.27 -4.97 11.49 -56.52 -0.65 -5.61 16 28 N -0.26 -4.76 11.40 -47.69 -0.54 -5.30 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.10 0.07 8.09 -2.39 -0.02 0.05 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.18 1.48 7.80 -2.91 -0.02 1.46 16 33 H 0.41 2.87 6.62 -92.71 -0.61 2.26 16 34 H 0.08 1.07 8.09 -2.39 -0.02 1.06 16 35 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 36 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.07 2.24 8.09 -2.38 -0.02 2.22 16 39 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16 40 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.37 20.29 7.67 -92.71 -0.71 19.58 16 43 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.20 1.19 6.54 -2.91 -0.02 1.17 16 Total: -1.00 -74.85 397.64 2.12 -72.74 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.31 Total: 23.01 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.88 Total: -11.35 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -5.42 Total: -120.59 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.06 Total: -11.91 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -74.85 2.12 -72.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266083877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.752 kcal (2) G-P(sol) polarization free energy of solvation -74.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds