Wall clock time and date at job start Tue Mar 31 2020 23:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35316 * 126.12712 * 2 1 4 4 C 1.39864 * 107.91828 * 180.14439 * 3 2 1 5 5 C 1.50706 * 125.89999 * 179.86198 * 4 3 2 6 6 N 1.46896 * 109.47020 * 94.71066 * 5 4 3 7 7 C 1.46904 * 111.00044 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46758 * 325.00240 * 7 6 5 9 9 C 1.53000 * 109.46767 * 84.99844 * 7 6 5 10 10 C 1.52999 * 109.47475 * 205.00161 * 7 6 5 11 11 C 1.53009 * 109.46822 * 64.99907 * 10 7 6 12 12 N 1.46498 * 109.46748 * 180.02562 * 11 10 7 13 13 C 1.34780 * 119.99634 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99648 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00139 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99816 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00034 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47239 * 89.99828 * 21 19 17 23 23 H 1.48507 * 109.47318 * 209.99742 * 21 19 17 24 24 H 1.48501 * 109.47140 * 329.99814 * 21 19 17 25 25 N 1.30836 * 108.20352 * 359.59749 * 4 3 2 26 26 N 1.34952 * 126.12632 * 179.69687 * 2 1 3 27 27 C 1.46497 * 126.03662 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47246 * 270.30038 * 1 2 3 29 29 H 1.09004 * 109.46790 * 30.29907 * 1 2 3 30 30 H 1.08999 * 109.46935 * 150.29416 * 1 2 3 31 31 H 1.07995 * 126.03881 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47262 * 214.71431 * 5 4 3 33 33 H 1.09002 * 109.46811 * 334.71511 * 5 4 3 34 34 H 1.00900 * 111.00313 * 303.95648 * 6 5 4 35 35 H 1.08999 * 109.47158 * 60.00641 * 9 7 6 36 36 H 1.09010 * 109.46596 * 180.02562 * 9 7 6 37 37 H 1.08988 * 109.47539 * 300.00008 * 9 7 6 38 38 H 1.08991 * 109.47140 * 184.99622 * 10 7 6 39 39 H 1.08994 * 109.47175 * 305.00412 * 10 7 6 40 40 H 1.09002 * 109.47009 * 300.00298 * 11 10 7 41 41 H 1.09002 * 109.46708 * 59.99986 * 11 10 7 42 42 H 0.96999 * 120.00323 * 359.97438 * 12 11 10 43 43 H 1.09002 * 109.47539 * 299.99747 * 15 13 12 44 44 H 1.09006 * 109.47241 * 59.99950 * 15 13 12 45 45 H 0.96999 * 120.00575 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46759 * 270.01771 * 27 26 2 47 47 H 1.08999 * 109.47396 * 30.01153 * 27 26 2 48 48 H 1.08996 * 109.47687 * 150.02155 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 7 5.3215 1.7354 1.3714 7 6 6.5129 2.5943 1.4065 8 1 7.1272 2.3995 0.5274 9 6 6.0829 4.0626 1.4130 10 6 7.3212 2.2938 2.6703 11 6 7.8563 0.8618 2.6050 12 7 8.6297 0.5740 3.8154 13 6 9.2010 -0.6358 3.9782 14 8 9.0752 -1.4860 3.1225 15 6 9.9971 -0.9318 5.2231 16 16 10.6300 -2.6257 5.1460 17 6 11.4941 -2.6997 6.6798 18 1 11.5081 -1.8402 7.3336 19 6 12.1578 -3.8621 7.0471 20 7 12.1412 -4.9094 6.2499 21 14 13.0733 -3.9406 8.6735 22 1 12.1551 -4.4247 9.7355 23 1 14.2226 -4.8730 8.5500 24 1 13.5700 -2.5868 9.0278 25 7 3.6333 -0.6524 0.0034 26 7 2.3027 -1.0900 0.0058 27 6 1.8539 -2.4845 0.0126 28 1 -0.3634 0.0054 1.0276 29 1 -0.3633 0.8873 -0.5185 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9741 2.1210 0.0004 32 1 5.6423 1.0676 -0.5945 33 1 4.6027 2.5049 -0.4465 34 1 4.5873 2.1122 1.9519 35 1 5.4686 4.2574 2.2921 36 1 6.9670 4.6999 1.4387 37 1 5.5072 4.2767 0.5127 38 1 8.1561 2.9907 2.7418 39 1 6.6809 2.4028 3.5456 40 1 7.0212 0.1649 2.5334 41 1 8.4966 0.7529 1.7297 42 1 8.7313 1.2543 4.4994 43 1 10.8319 -0.2346 5.2948 44 1 9.3566 -0.8230 6.0984 45 1 12.6046 -5.7219 6.5068 46 1 1.7420 -2.8251 1.0420 47 1 0.8957 -2.5605 -0.5014 48 1 2.5901 -3.1057 -0.4975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266127391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:28 Heat of formation + Delta-G solvation = 28.058612 kcal Electronic energy + Delta-G solvation = -25896.718227 eV Core-core repulsion = 22114.185209 eV Total energy + Delta-G solvation = -3782.533018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49764 -39.05794 -37.86807 -34.89960 -33.86590 -32.36972 -32.29148 -31.62195 -29.87427 -27.95795 -27.44769 -27.29346 -25.43108 -24.80058 -23.01208 -21.13379 -20.62164 -20.08175 -19.55221 -17.74755 -16.84086 -16.27480 -16.14540 -15.78131 -15.73880 -15.40773 -14.93275 -14.75235 -14.61210 -14.23259 -13.86797 -13.81587 -13.59729 -13.52879 -13.35455 -13.05150 -12.98579 -12.74204 -12.66728 -12.56041 -12.44410 -12.18094 -12.01858 -11.73731 -11.43643 -11.19886 -11.02667 -10.99429 -10.95971 -10.70556 -10.65936 -9.74771 -9.37875 -9.22950 -9.01156 -8.77174 -8.69216 -8.54765 -8.14620 -6.42160 -6.15586 -3.85291 1.62407 2.25533 2.47203 3.15703 3.25991 3.29038 3.32338 3.39056 3.86224 3.98834 4.21129 4.26410 4.29247 4.57279 4.63220 4.70240 4.76576 4.85701 4.95996 5.02283 5.04758 5.13657 5.18371 5.19135 5.21885 5.29797 5.35981 5.39515 5.40049 5.46669 5.54379 5.55895 5.72681 5.76082 5.80713 5.93324 5.98568 6.13094 6.23885 6.34718 6.39890 6.74662 6.77356 6.85317 7.12625 7.56760 7.65292 7.91275 8.41213 8.81119 9.29417 10.91838 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.001868 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.599543 B =14982.489115 C =16627.331497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.078 3.922 3 C -0.272 4.272 4 C 0.075 3.925 5 C 0.142 3.858 6 N -0.674 5.674 7 C 0.088 3.912 8 H 0.083 0.917 9 C -0.182 4.182 10 C -0.117 4.117 11 C 0.127 3.873 12 N -0.741 5.741 13 C 0.529 3.471 14 O -0.518 6.518 15 C -0.153 4.153 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.072 3.928 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.267 5.267 26 N -0.372 5.372 27 C 0.099 3.901 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.143 0.857 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.343 0.657 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.395 0.605 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.268 0.732 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.175 18.515 -13.365 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 C -0.301 4.301 4 C -0.092 4.092 5 C 0.011 3.989 6 N -0.306 5.306 7 C -0.023 4.023 8 H 0.102 0.898 9 C -0.241 4.241 10 C -0.155 4.155 11 C 0.003 3.997 12 N -0.395 5.395 13 C 0.315 3.685 14 O -0.392 6.392 15 C -0.304 4.304 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.090 0.910 19 C -0.137 4.137 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 N -0.089 5.089 26 N -0.155 5.155 27 C -0.043 4.043 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.161 0.839 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.228 0.772 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.306 15.079 -14.837 31.475 hybrid contribution -0.204 2.779 2.232 3.570 sum -23.509 17.858 -12.605 32.102 Atomic orbital electron populations 1.20442 0.87478 1.03681 1.03340 1.21074 0.94604 0.87441 1.01830 1.21076 0.91786 0.98798 1.18471 1.22072 0.94970 0.91720 1.00435 1.20201 0.92439 0.95326 0.90888 1.60485 1.08542 1.52107 1.09485 1.21509 0.91951 0.89910 0.98894 0.89840 1.22500 1.02155 0.97515 1.01919 1.21768 0.99207 0.96543 0.98029 1.21215 0.95462 0.95890 0.87102 1.46038 1.55327 1.15340 1.22783 1.20251 0.78864 0.81381 0.88003 1.90704 1.59276 1.45610 1.43594 1.23531 1.01840 1.07298 0.97692 1.85410 1.65419 1.04895 1.27732 1.22883 1.37722 1.02219 1.05446 0.90974 1.24993 0.96031 0.94709 0.97929 1.70024 1.41150 1.02962 1.36185 0.86173 0.79031 0.78107 0.82200 1.20314 1.20784 1.19726 1.77501 0.95701 1.12468 1.23256 1.48531 1.03965 1.06058 1.56970 1.21864 1.00865 0.77907 1.03630 0.90184 0.89738 0.91215 0.83932 0.89425 0.93216 0.83811 0.92267 0.91756 0.92588 0.91169 0.91261 0.90229 0.92384 0.77215 0.89375 0.89381 0.92246 0.90527 0.89686 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.41 10.12 36.01 0.36 -0.05 16 2 C 0.08 0.68 6.93 -82.26 -0.57 0.11 16 3 C -0.27 -2.51 10.65 -40.01 -0.43 -2.94 16 4 C 0.08 0.84 6.73 -82.41 -0.55 0.28 16 5 C 0.14 1.28 6.04 -4.98 -0.03 1.25 16 6 N -0.67 -6.11 5.69 -107.99 -0.61 -6.72 16 7 C 0.09 0.68 2.59 -67.71 -0.18 0.50 16 8 H 0.08 0.67 7.80 -51.93 -0.41 0.27 16 9 C -0.18 -1.04 9.16 37.16 0.34 -0.70 16 10 C -0.12 -1.03 5.01 -26.73 -0.13 -1.16 16 11 C 0.13 1.69 5.56 -4.04 -0.02 1.67 16 12 N -0.74 -10.95 5.56 -60.29 -0.33 -11.29 16 13 C 0.53 10.74 7.85 -10.98 -0.09 10.65 16 14 O -0.52 -12.79 15.86 5.56 0.09 -12.70 16 15 C -0.15 -3.27 6.16 36.01 0.22 -3.05 16 16 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 17 C -0.53 -15.67 9.50 30.94 0.29 -15.37 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.79 13.22 55.49 0.73 -26.05 16 21 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 N -0.27 -3.60 12.57 33.67 0.42 -3.18 16 26 N -0.37 -3.91 4.01 -63.89 -0.26 -4.17 16 27 C 0.10 0.67 11.27 59.85 0.67 1.34 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.23 7.08 -51.93 -0.37 -0.14 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.05 0.34 7.44 -51.93 -0.39 -0.04 16 34 H 0.34 2.85 8.46 -39.29 -0.33 2.51 16 35 H 0.06 0.33 8.13 -51.93 -0.42 -0.10 16 36 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 37 H 0.06 0.30 7.45 -51.94 -0.39 -0.09 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.39 4.53 8.47 -40.82 -0.35 4.19 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.32 7.05 -51.93 -0.37 -0.05 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 414.71 15.07 6.25 6.25 Total: -1.00 -38.78 414.71 -9.17 -47.95 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.03 Total: 2.45 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -0.20 Total: -5.44 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.05 Total: -51.41 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -38.78 -9.17 -47.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266127391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.010 kcal (2) G-P(sol) polarization free energy of solvation -38.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds