Wall clock time and date at job start Tue Mar 31 2020 23:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35316 * 126.12712 * 2 1 4 4 C 1.39864 * 107.91828 * 180.14439 * 3 2 1 5 5 C 1.50706 * 125.89999 * 179.86198 * 4 3 2 6 6 N 1.46896 * 109.47020 * 94.71066 * 5 4 3 7 7 C 1.46904 * 111.00044 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46758 * 325.00240 * 7 6 5 9 9 C 1.53000 * 109.46767 * 84.99844 * 7 6 5 10 10 C 1.52999 * 109.47475 * 205.00161 * 7 6 5 11 11 C 1.53009 * 109.46822 * 64.99907 * 10 7 6 12 12 N 1.46498 * 109.46748 * 180.02562 * 11 10 7 13 13 C 1.34780 * 119.99634 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99648 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.46992 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00139 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99816 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00034 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00160 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47239 * 89.99828 * 21 19 17 23 23 H 1.48507 * 109.47318 * 209.99742 * 21 19 17 24 24 H 1.48501 * 109.47140 * 329.99814 * 21 19 17 25 25 N 1.30836 * 108.20352 * 359.59749 * 4 3 2 26 26 N 1.34952 * 126.12632 * 179.69687 * 2 1 3 27 27 C 1.46497 * 126.03662 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47246 * 270.30038 * 1 2 3 29 29 H 1.09004 * 109.46790 * 30.29907 * 1 2 3 30 30 H 1.08999 * 109.46935 * 150.29416 * 1 2 3 31 31 H 1.07995 * 126.03881 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.47262 * 214.71431 * 5 4 3 33 33 H 1.09002 * 109.46811 * 334.71511 * 5 4 3 34 34 H 1.00900 * 111.00313 * 303.95648 * 6 5 4 35 35 H 1.08999 * 109.47158 * 60.00641 * 9 7 6 36 36 H 1.09010 * 109.46596 * 180.02562 * 9 7 6 37 37 H 1.08988 * 109.47539 * 300.00008 * 9 7 6 38 38 H 1.08991 * 109.47140 * 184.99622 * 10 7 6 39 39 H 1.08994 * 109.47175 * 305.00412 * 10 7 6 40 40 H 1.09002 * 109.47009 * 300.00298 * 11 10 7 41 41 H 1.09002 * 109.46708 * 59.99986 * 11 10 7 42 42 H 0.96999 * 120.00323 * 359.97438 * 12 11 10 43 43 H 1.09002 * 109.47539 * 299.99747 * 15 13 12 44 44 H 1.09006 * 109.47241 * 59.99950 * 15 13 12 45 45 H 0.96999 * 120.00575 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46759 * 270.01771 * 27 26 2 47 47 H 1.08999 * 109.47396 * 30.01153 * 27 26 2 48 48 H 1.08996 * 109.47687 * 150.02155 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 7 5.3215 1.7354 1.3714 7 6 6.5129 2.5943 1.4065 8 1 7.1272 2.3995 0.5274 9 6 6.0829 4.0626 1.4130 10 6 7.3212 2.2938 2.6703 11 6 7.8563 0.8618 2.6050 12 7 8.6297 0.5740 3.8154 13 6 9.2010 -0.6358 3.9782 14 8 9.0752 -1.4860 3.1225 15 6 9.9971 -0.9318 5.2231 16 16 10.6300 -2.6257 5.1460 17 6 11.4941 -2.6997 6.6798 18 1 11.5081 -1.8402 7.3336 19 6 12.1578 -3.8621 7.0471 20 7 12.1412 -4.9094 6.2499 21 14 13.0733 -3.9406 8.6735 22 1 12.1551 -4.4247 9.7355 23 1 14.2226 -4.8730 8.5500 24 1 13.5700 -2.5868 9.0278 25 7 3.6333 -0.6524 0.0034 26 7 2.3027 -1.0900 0.0058 27 6 1.8539 -2.4845 0.0126 28 1 -0.3634 0.0054 1.0276 29 1 -0.3633 0.8873 -0.5185 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9741 2.1210 0.0004 32 1 5.6423 1.0676 -0.5945 33 1 4.6027 2.5049 -0.4465 34 1 4.5873 2.1122 1.9519 35 1 5.4686 4.2574 2.2921 36 1 6.9670 4.6999 1.4387 37 1 5.5072 4.2767 0.5127 38 1 8.1561 2.9907 2.7418 39 1 6.6809 2.4028 3.5456 40 1 7.0212 0.1649 2.5334 41 1 8.4966 0.7529 1.7297 42 1 8.7313 1.2543 4.4994 43 1 10.8319 -0.2346 5.2948 44 1 9.3566 -0.8230 6.0984 45 1 12.6046 -5.7219 6.5068 46 1 1.7420 -2.8251 1.0420 47 1 0.8957 -2.5605 -0.5014 48 1 2.5901 -3.1057 -0.4975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266127391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:27 Heat of formation + Delta-G solvation = -1.313939 kcal Electronic energy + Delta-G solvation = -25897.991917 eV Core-core repulsion = 22114.185209 eV Total energy + Delta-G solvation = -3783.806708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19541 -40.58625 -38.66763 -36.05306 -34.74576 -34.58318 -32.85485 -32.55394 -31.16121 -29.09222 -28.07834 -27.83203 -27.65104 -25.49364 -24.00938 -22.06635 -21.42907 -21.26829 -20.29058 -19.79578 -17.78408 -17.46951 -17.18266 -17.02874 -16.87931 -16.62001 -16.23926 -16.08892 -15.81982 -15.24067 -14.86122 -14.74495 -14.71953 -14.44360 -14.24607 -13.99747 -13.89197 -13.63078 -13.48163 -13.30310 -13.16621 -13.15769 -13.09575 -12.88955 -12.78741 -12.63196 -12.52825 -12.22547 -12.10181 -11.72321 -11.71716 -11.38927 -11.14277 -10.92476 -10.27233 -10.11803 -10.05767 -9.44809 -9.25217 -8.67459 -8.34293 -6.13107 0.93102 1.27329 1.42785 1.47459 1.58277 1.64633 1.64868 1.76606 2.27145 2.35291 2.99446 3.32811 3.34062 3.59891 3.76687 3.88619 3.97282 4.08292 4.15843 4.25951 4.26839 4.32322 4.33875 4.44697 4.50181 4.51135 4.57315 4.61526 4.62893 4.75628 4.76312 4.79978 4.87589 4.95109 5.06891 5.07420 5.19686 5.24885 5.32845 5.35971 5.41606 5.52933 5.70030 6.09893 6.18598 6.20004 6.50504 6.57444 6.83698 7.06325 7.30354 8.75134 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.001868 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.599543 B =14982.489115 C =16627.331497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.079 3.921 3 C -0.286 4.286 4 C 0.065 3.935 5 C 0.147 3.853 6 N -0.690 5.690 7 C 0.090 3.910 8 H 0.077 0.923 9 C -0.172 4.172 10 C -0.105 4.105 11 C 0.130 3.870 12 N -0.712 5.712 13 C 0.528 3.472 14 O -0.571 6.571 15 C -0.127 4.127 16 S -0.157 6.157 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.912 5.912 21 Si 1.002 2.998 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.257 1.257 25 N -0.333 5.333 26 N -0.384 5.384 27 C 0.091 3.909 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.348 0.652 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.416 0.584 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.079 0.921 47 H 0.119 0.881 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.425 21.582 -11.895 35.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C -0.315 4.315 4 C -0.101 4.101 5 C 0.017 3.983 6 N -0.323 5.323 7 C -0.020 4.020 8 H 0.095 0.905 9 C -0.231 4.231 10 C -0.143 4.143 11 C 0.007 3.993 12 N -0.366 5.366 13 C 0.314 3.686 14 O -0.450 6.450 15 C -0.278 4.278 16 S 0.070 5.930 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.823 3.177 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.181 1.181 25 N -0.156 5.156 26 N -0.167 5.167 27 C -0.050 4.050 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.183 0.817 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.137 0.863 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.576 18.216 -13.355 33.379 hybrid contribution 0.077 1.880 1.705 2.540 sum -24.499 20.096 -11.650 33.761 Atomic orbital electron populations 1.20591 0.84313 1.05273 1.04413 1.21814 0.96495 0.86741 0.99863 1.21413 0.91019 1.00170 1.18896 1.22473 0.96462 0.91408 0.99741 1.20169 0.91358 0.95907 0.90873 1.60419 1.09165 1.53068 1.09641 1.21493 0.91262 0.91288 0.97992 0.90510 1.22392 1.02649 0.95479 1.02566 1.21735 1.00093 0.93344 0.99110 1.21267 0.93901 0.98403 0.85754 1.45804 1.53358 1.13828 1.23626 1.20148 0.78958 0.82427 0.87069 1.90693 1.61437 1.47680 1.45162 1.23367 1.02871 1.02476 0.99136 1.85644 1.66626 1.11642 1.29071 1.23212 1.37858 1.02987 1.05286 0.89799 1.26182 0.96834 0.94035 1.02318 1.70197 1.42249 1.03785 1.38646 0.84912 0.77456 0.78825 0.76503 1.19277 1.20246 1.18074 1.77403 0.98122 1.14039 1.26003 1.48818 1.03391 1.07514 1.56979 1.22109 1.02112 0.76535 1.04195 0.89177 0.88083 0.89703 0.81724 0.91318 0.90768 0.83298 0.91610 0.90909 0.91978 0.88952 0.90219 0.93115 0.93761 0.74705 0.87030 0.87258 0.92001 0.90289 0.86261 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 10.12 71.24 0.72 0.14 16 2 C 0.08 1.30 6.93 41.41 0.29 1.59 16 3 C -0.29 -5.07 10.65 21.99 0.23 -4.84 16 4 C 0.07 1.50 6.73 43.10 0.29 1.79 16 5 C 0.15 2.71 6.04 85.56 0.52 3.23 16 6 N -0.69 -12.31 5.69 -495.57 -2.82 -15.13 16 7 C 0.09 1.26 2.59 44.91 0.12 1.38 16 8 H 0.08 1.19 7.80 -2.39 -0.02 1.17 16 9 C -0.17 -1.49 9.16 71.98 0.66 -0.84 16 10 C -0.10 -1.62 5.01 30.60 0.15 -1.47 16 11 C 0.13 3.45 5.56 86.38 0.48 3.93 16 12 N -0.71 -20.21 5.56 -463.04 -2.57 -22.78 16 13 C 0.53 21.50 7.85 87.66 0.69 22.19 16 14 O -0.57 -29.38 15.86 -3.02 -0.05 -29.43 16 15 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 16 S -0.16 -9.14 20.57 -56.49 -1.16 -10.30 16 17 C -0.55 -32.09 9.50 67.95 0.65 -31.45 16 18 H 0.08 4.56 7.80 -2.91 -0.02 4.53 16 19 C 0.01 0.63 5.49 84.86 0.47 1.10 16 20 N -0.91 -57.53 13.22 21.65 0.29 -57.25 16 21 Si 1.00 44.54 29.55 68.60 2.03 46.57 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 25 N -0.33 -9.52 12.57 -47.38 -0.60 -10.12 16 26 N -0.38 -8.22 4.01 -356.03 -1.43 -9.65 16 27 C 0.09 1.25 11.27 127.77 1.44 2.69 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.32 7.08 -2.39 -0.02 0.30 16 31 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 32 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.07 0.95 7.44 -2.39 -0.02 0.93 16 34 H 0.35 5.46 8.46 -89.69 -0.76 4.70 16 35 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 36 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.06 0.49 7.45 -2.39 -0.02 0.47 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.68 7.75 -2.39 -0.02 1.66 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.42 8.36 8.47 -92.71 -0.79 7.58 16 43 H 0.11 4.18 8.14 -2.39 -0.02 4.16 16 44 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 45 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.12 0.72 7.05 -2.39 -0.02 0.71 16 48 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -89.48 414.71 0.24 -89.24 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.58 Total: 24.36 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 7.14 Total: -5.50 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -7.13 Total: -114.93 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.16 Total: -10.30 kcal Total: -89.48 0.24 -89.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266127391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.927 kcal (2) G-P(sol) polarization free energy of solvation -89.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds