Wall clock time and date at job start Tue Mar 31 2020 23:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.64290 * 2 1 4 4 N 1.46497 * 109.46834 * 298.30872 * 3 2 1 5 5 C 1.36936 * 120.00082 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00075 * 0.02562 * 5 4 3 7 7 C 1.38818 * 120.00349 * 179.97438 * 5 4 3 8 8 N 1.31616 * 120.00338 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99765 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47353 * 89.99718 * 9 7 5 11 11 H 1.48503 * 109.47125 * 209.99514 * 9 7 5 12 12 H 1.48497 * 109.47203 * 329.99614 * 9 7 5 13 13 C 1.55160 * 110.87188 * 123.24718 * 2 1 3 14 14 C 1.54905 * 101.58157 * 82.92981 * 13 2 1 15 15 N 1.47416 * 104.83459 * 37.01228 * 14 13 2 16 16 C 1.34775 * 125.65264 * 156.13686 * 15 14 13 17 17 O 1.21556 * 119.99873 * 353.93506 * 16 15 14 18 18 C 1.47868 * 120.00518 * 173.93626 * 16 15 14 19 19 C 1.40618 * 119.75090 * 7.51553 * 18 16 15 20 20 C 1.35733 * 120.83350 * 179.97438 * 19 18 16 21 21 C 1.40699 * 120.08367 * 0.02562 * 20 19 18 22 22 N 1.33792 * 120.85721 * 180.02562 * 21 20 19 23 23 C 1.31333 * 119.76472 * 180.02562 * 22 21 20 24 24 C 1.39761 * 120.70851 * 359.95441 * 23 22 21 25 25 N 1.31277 * 120.67205 * 0.02562 * 24 23 22 26 26 C 1.33821 * 119.73940 * 0.02562 * 25 24 23 27 27 C 1.38409 * 119.75896 * 187.24213 * 18 16 15 28 28 C 1.47029 * 108.70176 * 335.87103 * 15 14 13 29 29 H 1.08999 * 109.47110 * 181.68990 * 1 2 3 30 30 H 1.08996 * 109.47206 * 301.69345 * 1 2 3 31 31 H 1.09000 * 109.46652 * 61.68999 * 1 2 3 32 32 H 1.08995 * 109.47347 * 58.30909 * 3 2 1 33 33 H 1.08999 * 109.46911 * 178.31326 * 3 2 1 34 34 H 0.97004 * 120.00051 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00027 * 180.02562 * 8 7 5 36 36 H 1.08994 * 111.00575 * 201.00693 * 13 2 1 37 37 H 1.09008 * 110.99907 * 324.85682 * 13 2 1 38 38 H 1.08998 * 110.36878 * 278.17219 * 14 13 2 39 39 H 1.09000 * 110.36682 * 155.85437 * 14 13 2 40 40 H 1.08003 * 119.58790 * 359.97438 * 19 18 16 41 41 H 1.07996 * 119.95530 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.64882 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.66156 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.24920 * 0.02562 * 27 18 16 45 45 H 1.08995 * 109.88057 * 120.48086 * 28 15 14 46 46 H 1.09005 * 109.88169 * 241.64261 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6286 2.1196 -1.2160 5 6 1.9917 3.4215 -1.4361 6 1 2.6034 3.9410 -0.7135 7 6 1.5745 4.0731 -2.5887 8 7 1.9231 5.3246 -2.8000 9 14 0.5171 3.1742 -3.8390 10 1 -0.9170 3.3705 -3.5069 11 1 0.7891 3.7129 -5.1959 12 1 0.8384 1.7248 -3.8083 13 6 2.0829 -0.7948 1.2125 14 6 2.0191 -2.2501 0.6855 15 7 2.3756 -2.1507 -0.7415 16 6 2.8861 -3.1450 -1.4947 17 8 3.1921 -4.2024 -0.9791 18 6 3.0741 -2.9496 -2.9483 19 6 2.8696 -1.6784 -3.5137 20 6 3.0364 -1.4742 -4.8452 21 6 3.4181 -2.5406 -5.6799 22 7 3.5874 -2.3566 -6.9942 23 6 3.9435 -3.3673 -7.7535 24 6 4.1492 -4.6355 -7.2034 25 7 3.9898 -4.8413 -5.9167 26 6 3.6262 -3.8275 -5.1224 27 6 3.4555 -4.0178 -3.7414 28 6 2.0761 -0.7892 -1.2085 29 1 -0.3633 -1.0272 0.0303 30 1 -0.3633 0.5399 0.8744 31 1 -0.3632 0.4874 -0.9048 32 1 1.6924 1.9621 0.8744 33 1 3.1588 1.4096 0.0302 34 1 1.0789 1.6531 -1.8650 35 1 1.6312 5.7800 -3.6052 36 1 3.1096 -0.5044 1.4347 37 1 1.4445 -0.6676 2.0868 38 1 1.0116 -2.6505 0.7978 39 1 2.7381 -2.8766 1.2134 40 1 2.5760 -0.8541 -2.8806 41 1 2.8759 -0.4919 -5.2643 42 1 4.0793 -3.2167 -8.8143 43 1 4.4422 -5.4546 -7.8434 44 1 3.6154 -4.9915 -3.3025 45 1 2.9852 -0.3164 -1.5800 46 1 1.3251 -0.8249 -1.9978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270839380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:06 Heat of formation + Delta-G solvation = 79.283145 kcal Electronic energy + Delta-G solvation = -29549.110218 eV Core-core repulsion = 25633.354511 eV Total energy + Delta-G solvation = -3915.755707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72786 -40.61253 -38.47459 -37.21884 -35.12340 -34.99228 -32.96829 -31.74316 -30.86344 -30.72700 -29.45267 -27.03868 -26.29738 -25.82437 -24.63442 -23.50414 -22.56269 -21.72719 -20.40575 -19.65878 -19.07920 -18.02197 -17.64231 -17.26616 -16.34845 -16.26539 -15.56046 -15.28825 -15.09207 -14.68452 -14.64196 -14.37145 -14.23257 -14.01560 -13.96501 -13.38273 -13.32343 -12.99515 -12.57313 -12.34119 -12.20405 -12.13080 -12.03566 -11.95245 -11.94599 -11.89713 -11.77669 -11.49372 -10.97515 -10.69380 -10.54469 -10.36570 -10.23214 -10.01589 -9.64893 -9.40876 -9.28249 -8.99042 -8.95480 -8.68366 -7.33275 -5.84081 -3.20802 -0.21174 0.15886 1.55161 2.12825 2.72162 3.02431 3.25778 3.31259 3.39540 3.70407 3.76354 3.82638 3.95969 4.15263 4.35173 4.50258 4.50610 4.55826 4.66631 4.77077 4.79243 4.94381 5.08450 5.11155 5.15865 5.33805 5.38784 5.45681 5.47934 5.55996 5.59548 5.62059 5.70953 5.73978 5.80709 5.87137 5.94910 6.00232 6.06404 6.09338 6.15052 6.33801 6.34790 6.52029 6.57349 6.94212 7.29932 7.40643 7.90735 7.93241 8.34252 9.12190 9.84044 10.02643 11.34220 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.004265 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.420369 B = 6563.832092 C = 9210.102726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 C 0.172 3.828 4 N -0.755 5.755 5 C -0.246 4.246 6 H 0.091 0.909 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.879 3.121 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.277 1.277 13 C -0.121 4.121 14 C 0.108 3.892 15 N -0.608 5.608 16 C 0.575 3.425 17 O -0.537 6.537 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.082 4.082 21 C 0.094 3.906 22 N -0.425 5.425 23 C 0.083 3.917 24 C 0.071 3.929 25 N -0.418 5.418 26 C 0.066 3.934 27 C -0.017 4.017 28 C 0.093 3.907 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.178 0.822 41 H 0.149 0.851 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.153 0.847 45 H 0.092 0.908 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -19.431 -2.394 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 C 0.044 3.956 4 N -0.401 5.401 5 C -0.376 4.376 6 H 0.109 0.891 7 C -0.188 4.188 8 N -0.579 5.579 9 Si 0.709 3.291 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.204 1.204 13 C -0.160 4.160 14 C -0.014 4.014 15 N -0.340 5.340 16 C 0.365 3.635 17 O -0.415 6.415 18 C -0.113 4.113 19 C -0.134 4.134 20 C -0.101 4.101 21 C -0.029 4.029 22 N -0.138 5.138 23 C -0.093 4.093 24 C -0.105 4.105 25 N -0.132 5.132 26 C -0.057 4.057 27 C -0.038 4.038 28 C -0.028 4.028 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.195 0.805 41 H 0.167 0.833 42 H 0.194 0.806 43 H 0.194 0.806 44 H 0.171 0.829 45 H 0.110 0.890 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.331 -19.725 -1.891 19.860 hybrid contribution -0.749 -0.427 -1.345 1.597 sum 0.582 -20.152 -3.236 20.418 Atomic orbital electron populations 1.21790 0.93149 1.01103 1.03182 1.21957 0.96599 0.96377 0.93499 1.20654 0.96749 0.87527 0.90660 1.42715 1.63403 1.12523 1.21430 1.19029 1.27309 0.86526 1.04754 0.89129 1.24659 1.00364 0.95821 0.97978 1.69688 1.49870 1.10296 1.28045 0.86651 0.81141 0.79127 0.82140 1.21025 1.21579 1.20366 1.22876 1.02589 0.92932 0.97592 1.22288 1.00769 0.98017 0.80328 1.48338 1.62507 1.11613 1.11584 1.17752 0.77296 0.82848 0.85615 1.90778 1.50923 1.26214 1.73603 1.19913 1.03352 0.94440 0.93600 1.22746 0.96111 0.98144 0.96371 1.20874 0.98085 0.98624 0.92536 1.19763 0.98228 0.93727 0.91225 1.68778 1.08444 1.32651 1.03968 1.24183 0.93990 0.89582 1.01593 1.24093 0.96165 0.98142 0.92103 1.68656 1.07781 1.31667 1.05067 1.19394 1.01045 0.90402 0.94880 1.21154 0.93099 0.99675 0.89861 1.22810 1.01082 0.81312 0.97633 0.93024 0.91675 0.91860 0.94597 0.95058 0.80736 0.92968 0.89980 0.89308 0.91147 0.90099 0.80532 0.83350 0.80624 0.80632 0.82912 0.89008 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.25 37.16 0.31 -1.33 16 2 C -0.08 -1.06 0.61 -152.67 -0.09 -1.15 16 3 C 0.17 2.83 5.07 -4.04 -0.02 2.81 16 4 N -0.75 -15.82 4.95 -59.91 -0.30 -16.12 16 5 C -0.25 -6.49 10.47 -15.06 -0.16 -6.64 16 6 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 7 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 8 N -0.93 -28.19 13.97 55.49 0.78 -27.41 16 9 Si 0.88 20.75 27.74 -169.99 -4.71 16.04 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -5.86 6.52 56.52 0.37 -5.49 16 13 C -0.12 -1.24 6.03 -24.58 -0.15 -1.39 16 14 C 0.11 1.18 6.62 -2.54 -0.02 1.16 16 15 N -0.61 -7.82 3.33 -178.54 -0.59 -8.41 16 16 C 0.58 8.37 7.80 -12.32 -0.10 8.28 16 17 O -0.54 -9.05 16.56 5.32 0.09 -8.96 16 18 C -0.11 -1.48 5.87 -105.00 -0.62 -2.10 16 19 C -0.11 -1.54 8.50 -39.58 -0.34 -1.87 16 20 C -0.08 -1.13 9.95 -39.55 -0.39 -1.52 16 21 C 0.09 1.31 6.59 -84.73 -0.56 0.75 16 22 N -0.42 -5.44 10.46 -10.74 -0.11 -5.55 16 23 C 0.08 0.73 11.22 -17.20 -0.19 0.54 16 24 C 0.07 0.61 11.22 -17.22 -0.19 0.42 16 25 N -0.42 -5.07 10.46 -10.81 -0.11 -5.18 16 26 C 0.07 0.90 6.58 -84.82 -0.56 0.34 16 27 C -0.02 -0.24 9.56 -38.69 -0.37 -0.61 16 28 C 0.09 1.21 3.46 -3.06 -0.01 1.20 16 29 H 0.05 0.54 7.47 -51.93 -0.39 0.16 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.87 7.11 -51.93 -0.37 0.50 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 34 H 0.36 7.27 4.23 -40.82 -0.17 7.10 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 37 H 0.09 0.75 8.04 -51.92 -0.42 0.34 16 38 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 39 H 0.08 0.89 7.99 -51.93 -0.41 0.48 16 40 H 0.18 2.34 2.66 -61.38 -0.16 2.18 16 41 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.15 2.01 7.63 -52.49 -0.40 1.61 16 45 H 0.09 1.27 6.40 -51.93 -0.33 0.94 16 46 H 0.08 1.02 6.43 -51.93 -0.33 0.69 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -33.61 370.16 -8.88 -42.48 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.94 Total: 8.53 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -3.55 Total: -0.99 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.34 Total: -62.68 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.61 -8.88 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270839380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.766 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds