Wall clock time and date at job start Tue Mar 31 2020 23:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.64290 * 2 1 4 4 N 1.46497 * 109.46834 * 298.30872 * 3 2 1 5 5 C 1.36936 * 120.00082 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00075 * 0.02562 * 5 4 3 7 7 C 1.38818 * 120.00349 * 179.97438 * 5 4 3 8 8 N 1.31616 * 120.00338 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99765 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47353 * 89.99718 * 9 7 5 11 11 H 1.48503 * 109.47125 * 209.99514 * 9 7 5 12 12 H 1.48497 * 109.47203 * 329.99614 * 9 7 5 13 13 C 1.55160 * 110.87188 * 123.24718 * 2 1 3 14 14 C 1.54905 * 101.58157 * 82.92981 * 13 2 1 15 15 N 1.47416 * 104.83459 * 37.01228 * 14 13 2 16 16 C 1.34775 * 125.65264 * 156.13686 * 15 14 13 17 17 O 1.21556 * 119.99873 * 353.93506 * 16 15 14 18 18 C 1.47868 * 120.00518 * 173.93626 * 16 15 14 19 19 C 1.40618 * 119.75090 * 7.51553 * 18 16 15 20 20 C 1.35733 * 120.83350 * 179.97438 * 19 18 16 21 21 C 1.40699 * 120.08367 * 0.02562 * 20 19 18 22 22 N 1.33792 * 120.85721 * 180.02562 * 21 20 19 23 23 C 1.31333 * 119.76472 * 180.02562 * 22 21 20 24 24 C 1.39761 * 120.70851 * 359.95441 * 23 22 21 25 25 N 1.31277 * 120.67205 * 0.02562 * 24 23 22 26 26 C 1.33821 * 119.73940 * 0.02562 * 25 24 23 27 27 C 1.38409 * 119.75896 * 187.24213 * 18 16 15 28 28 C 1.47029 * 108.70176 * 335.87103 * 15 14 13 29 29 H 1.08999 * 109.47110 * 181.68990 * 1 2 3 30 30 H 1.08996 * 109.47206 * 301.69345 * 1 2 3 31 31 H 1.09000 * 109.46652 * 61.68999 * 1 2 3 32 32 H 1.08995 * 109.47347 * 58.30909 * 3 2 1 33 33 H 1.08999 * 109.46911 * 178.31326 * 3 2 1 34 34 H 0.97004 * 120.00051 * 0.02562 * 4 3 2 35 35 H 0.97000 * 120.00027 * 180.02562 * 8 7 5 36 36 H 1.08994 * 111.00575 * 201.00693 * 13 2 1 37 37 H 1.09008 * 110.99907 * 324.85682 * 13 2 1 38 38 H 1.08998 * 110.36878 * 278.17219 * 14 13 2 39 39 H 1.09000 * 110.36682 * 155.85437 * 14 13 2 40 40 H 1.08003 * 119.58790 * 359.97438 * 19 18 16 41 41 H 1.07996 * 119.95530 * 180.02562 * 20 19 18 42 42 H 1.08000 * 119.64882 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.66156 * 180.02562 * 24 23 22 44 44 H 1.08001 * 120.24920 * 0.02562 * 27 18 16 45 45 H 1.08995 * 109.88057 * 120.48086 * 28 15 14 46 46 H 1.09005 * 109.88169 * 241.64261 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6286 2.1196 -1.2160 5 6 1.9917 3.4215 -1.4361 6 1 2.6034 3.9410 -0.7135 7 6 1.5745 4.0731 -2.5887 8 7 1.9231 5.3246 -2.8000 9 14 0.5171 3.1742 -3.8390 10 1 -0.9170 3.3705 -3.5069 11 1 0.7891 3.7129 -5.1959 12 1 0.8384 1.7248 -3.8083 13 6 2.0829 -0.7948 1.2125 14 6 2.0191 -2.2501 0.6855 15 7 2.3756 -2.1507 -0.7415 16 6 2.8861 -3.1450 -1.4947 17 8 3.1921 -4.2024 -0.9791 18 6 3.0741 -2.9496 -2.9483 19 6 2.8696 -1.6784 -3.5137 20 6 3.0364 -1.4742 -4.8452 21 6 3.4181 -2.5406 -5.6799 22 7 3.5874 -2.3566 -6.9942 23 6 3.9435 -3.3673 -7.7535 24 6 4.1492 -4.6355 -7.2034 25 7 3.9898 -4.8413 -5.9167 26 6 3.6262 -3.8275 -5.1224 27 6 3.4555 -4.0178 -3.7414 28 6 2.0761 -0.7892 -1.2085 29 1 -0.3633 -1.0272 0.0303 30 1 -0.3633 0.5399 0.8744 31 1 -0.3632 0.4874 -0.9048 32 1 1.6924 1.9621 0.8744 33 1 3.1588 1.4096 0.0302 34 1 1.0789 1.6531 -1.8650 35 1 1.6312 5.7800 -3.6052 36 1 3.1096 -0.5044 1.4347 37 1 1.4445 -0.6676 2.0868 38 1 1.0116 -2.6505 0.7978 39 1 2.7381 -2.8766 1.2134 40 1 2.5760 -0.8541 -2.8806 41 1 2.8759 -0.4919 -5.2643 42 1 4.0793 -3.2167 -8.8143 43 1 4.4422 -5.4546 -7.8434 44 1 3.6154 -4.9915 -3.3025 45 1 2.9852 -0.3164 -1.5800 46 1 1.3251 -0.8249 -1.9978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270839380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:05 Heat of formation + Delta-G solvation = 56.082190 kcal Electronic energy + Delta-G solvation = -29550.116287 eV Core-core repulsion = 25633.354511 eV Total energy + Delta-G solvation = -3916.761776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62892 -41.62895 -39.57480 -38.21067 -36.60714 -35.92562 -34.42441 -33.06903 -32.12055 -31.83823 -30.45526 -28.06747 -27.63724 -26.83968 -25.62293 -24.73615 -23.72909 -23.03056 -21.40088 -20.74560 -20.29408 -19.32289 -18.92892 -18.19108 -17.35806 -17.20097 -16.62697 -16.56933 -16.22982 -16.05534 -15.74629 -15.45371 -15.34377 -15.16757 -15.05673 -14.68160 -14.55615 -14.19984 -13.84615 -13.59610 -13.36921 -13.29302 -12.99837 -12.97373 -12.90069 -12.84870 -12.80588 -12.77430 -12.72829 -12.11752 -11.85772 -11.67699 -11.52371 -11.41599 -11.18181 -10.92386 -10.23956 -10.18987 -9.97535 -9.68656 -9.24732 -7.98261 -5.31121 -1.12101 -0.72032 0.62240 1.16815 1.38158 1.42708 1.50267 1.71004 2.02937 2.51303 2.84640 2.86587 3.00285 3.09659 3.16241 3.30785 3.35972 3.57810 3.66156 3.70171 3.82793 3.89945 3.92835 4.07607 4.21990 4.26681 4.31099 4.36622 4.45168 4.53474 4.62738 4.70573 4.72422 4.81547 4.84804 4.94972 4.97473 5.05684 5.08155 5.10668 5.17743 5.23328 5.25584 5.42194 5.47062 5.81912 6.12582 6.23099 6.25169 6.59063 6.84722 7.13120 7.88219 8.07115 9.23420 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.004265 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.420369 B = 6563.832092 C = 9210.102726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C 0.169 3.831 4 N -0.753 5.753 5 C -0.228 4.228 6 H 0.057 0.943 7 C -0.061 4.061 8 N -0.985 5.985 9 Si 0.940 3.060 10 H -0.280 1.280 11 H -0.301 1.301 12 H -0.240 1.240 13 C -0.110 4.110 14 C 0.105 3.895 15 N -0.603 5.603 16 C 0.574 3.426 17 O -0.566 6.566 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.093 4.093 21 C 0.078 3.922 22 N -0.458 5.458 23 C 0.099 3.901 24 C 0.089 3.911 25 N -0.444 5.444 26 C 0.050 3.950 27 C -0.019 4.019 28 C 0.094 3.906 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.178 0.822 41 H 0.147 0.853 42 H 0.224 0.776 43 H 0.226 0.774 44 H 0.150 0.850 45 H 0.081 0.919 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -22.148 -3.532 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 C 0.043 3.957 4 N -0.399 5.399 5 C -0.359 4.359 6 H 0.075 0.925 7 C -0.252 4.252 8 N -0.636 5.636 9 Si 0.768 3.232 10 H -0.206 1.206 11 H -0.228 1.228 12 H -0.164 1.164 13 C -0.148 4.148 14 C -0.016 4.016 15 N -0.335 5.335 16 C 0.364 3.636 17 O -0.447 6.447 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.044 4.044 22 N -0.173 5.173 23 C -0.078 4.078 24 C -0.088 4.088 25 N -0.158 5.158 26 C -0.072 4.072 27 C -0.040 4.040 28 C -0.028 4.028 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.194 0.806 41 H 0.164 0.836 42 H 0.240 0.760 43 H 0.243 0.757 44 H 0.168 0.832 45 H 0.099 0.901 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.634 -22.473 -2.946 22.675 hybrid contribution -0.407 0.358 -1.089 1.216 sum 0.227 -22.115 -4.034 22.481 Atomic orbital electron populations 1.21786 0.92183 1.02371 1.02714 1.21824 0.97203 0.93840 0.94758 1.20789 0.96563 0.89637 0.88685 1.42666 1.63310 1.10824 1.23110 1.19007 1.25147 0.88344 1.03369 0.92463 1.25425 1.02648 0.96624 1.00500 1.69877 1.52385 1.12509 1.28835 0.85626 0.79132 0.79979 0.78489 1.20637 1.22843 1.16409 1.22866 1.03041 0.91636 0.97251 1.22472 1.01635 0.98448 0.79068 1.48355 1.61659 1.11115 1.12351 1.17868 0.77041 0.82700 0.85962 1.90753 1.52476 1.27323 1.74165 1.19860 1.04445 0.94739 0.93293 1.22669 0.96489 0.97941 0.96305 1.20935 0.98686 0.98796 0.92812 1.19826 0.98835 0.93743 0.92022 1.68824 1.10268 1.34469 1.03694 1.25074 0.90669 0.88784 1.03263 1.24998 0.93067 0.99488 0.91274 1.68719 1.09093 1.31395 1.06641 1.19424 1.01858 0.90853 0.95025 1.21192 0.92998 0.99473 0.90307 1.22767 1.00763 0.81337 0.97916 0.90976 0.90947 0.93470 0.94467 0.95476 0.79983 0.93528 0.90022 0.86713 0.89541 0.90111 0.80564 0.83554 0.76003 0.75746 0.83225 0.90084 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.25 71.98 0.59 -2.27 16 2 C -0.08 -1.75 0.61 -50.99 -0.03 -1.78 16 3 C 0.17 5.43 5.07 86.38 0.44 5.86 16 4 N -0.75 -31.04 4.95 -343.46 -1.70 -32.74 16 5 C -0.23 -12.16 10.47 84.04 0.88 -11.28 16 6 H 0.06 3.39 8.06 -2.91 -0.02 3.37 16 7 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 8 N -0.99 -61.61 13.97 21.65 0.30 -61.30 16 9 Si 0.94 42.84 27.74 68.60 1.90 44.74 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.24 -9.31 6.52 99.48 0.65 -8.66 16 13 C -0.11 -1.95 6.03 31.99 0.19 -1.76 16 14 C 0.10 2.05 6.62 86.86 0.58 2.63 16 15 N -0.60 -14.83 3.33 -837.05 -2.78 -17.61 16 16 C 0.57 16.61 7.80 86.79 0.68 17.28 16 17 O -0.57 -19.13 16.56 -3.89 -0.06 -19.20 16 18 C -0.12 -3.29 5.87 -20.11 -0.12 -3.40 16 19 C -0.12 -3.10 8.50 22.27 0.19 -2.91 16 20 C -0.09 -2.57 9.95 22.29 0.22 -2.34 16 21 C 0.08 2.12 6.59 40.32 0.27 2.39 16 22 N -0.46 -10.94 10.46 -187.89 -1.96 -12.90 16 23 C 0.10 1.40 11.22 85.14 0.95 2.35 16 24 C 0.09 1.20 11.22 85.14 0.95 2.15 16 25 N -0.44 -9.99 10.46 -188.11 -1.97 -11.95 16 26 C 0.05 1.33 6.58 40.25 0.27 1.60 16 27 C -0.02 -0.53 9.56 22.85 0.22 -0.31 16 28 C 0.09 2.32 3.46 86.73 0.30 2.62 16 29 H 0.07 1.27 7.47 -2.39 -0.02 1.25 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.17 7.11 -2.39 -0.02 1.16 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 34 H 0.37 14.22 4.23 -92.71 -0.39 13.83 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 37 H 0.11 1.51 8.04 -2.38 -0.02 1.49 16 38 H 0.09 1.46 7.73 -2.39 -0.02 1.44 16 39 H 0.08 1.63 7.99 -2.39 -0.02 1.62 16 40 H 0.18 4.63 2.66 -11.26 -0.03 4.60 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.22 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.23 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.15 4.06 7.63 -2.91 -0.02 4.04 16 45 H 0.08 2.20 6.40 -2.39 -0.02 2.19 16 46 H 0.08 2.02 6.43 -2.38 -0.02 2.00 16 Total: -1.00 -76.52 370.16 1.32 -75.20 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.55 Total: 27.89 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 7.05 Total: 7.88 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -8.11 Total: -136.51 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.20 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Total: -76.52 1.32 -75.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270839380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.280 kcal (2) G-P(sol) polarization free energy of solvation -76.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds