Wall clock time and date at job start Tue Mar 31 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31922 * 120.17342 * 2 1 4 4 N 1.28280 * 122.32731 * 180.02562 * 3 2 1 5 5 C 1.31918 * 122.51190 * 359.97438 * 4 3 2 6 6 C 1.38498 * 119.97291 * 0.02562 * 5 4 3 7 7 C 1.39724 * 120.16957 * 179.71820 * 2 1 3 8 8 C 1.48135 * 121.14749 * 359.97438 * 7 2 1 9 9 O 1.21517 * 119.99569 * 5.88403 * 8 7 2 10 10 N 1.34770 * 120.00147 * 185.87813 * 8 7 2 11 11 C 1.46509 * 120.00071 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47239 * 179.97438 * 11 10 8 13 13 C 1.38234 * 120.00056 * 269.72747 * 12 11 10 14 14 C 1.38232 * 120.00278 * 179.81152 * 13 12 11 15 15 C 1.38242 * 119.99661 * 0.41656 * 14 13 12 16 16 C 1.50698 * 119.99936 * 179.79292 * 15 14 13 17 17 H 1.08993 * 109.47116 * 160.02031 * 16 15 14 18 18 C 1.53001 * 109.46898 * 280.02079 * 16 15 14 19 19 N 1.46502 * 109.47084 * 40.01756 * 16 15 14 20 20 C 1.36934 * 119.99546 * 155.00292 * 19 16 15 21 21 H 1.08005 * 120.00590 * 359.97438 * 20 19 16 22 22 C 1.38817 * 120.00094 * 180.02562 * 20 19 16 23 23 N 1.31614 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99413 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46846 * 90.00406 * 24 22 20 26 26 H 1.48503 * 109.46527 * 209.99973 * 24 22 20 27 27 H 1.48494 * 109.47282 * 330.00024 * 24 22 20 28 28 C 1.38233 * 120.00055 * 359.81027 * 15 14 13 29 29 C 1.38230 * 120.00081 * 89.99719 * 12 11 10 30 30 H 1.09000 * 109.47028 * 96.30249 * 1 2 3 31 31 H 1.09004 * 109.46672 * 336.30927 * 1 2 3 32 32 H 1.08994 * 109.47464 * 216.30641 * 1 2 3 33 33 H 1.08003 * 120.01439 * 179.97438 * 5 4 3 34 34 H 1.07998 * 121.09356 * 179.97438 * 6 5 4 35 35 H 0.96993 * 120.00313 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46716 * 300.00203 * 11 10 8 37 37 H 1.08997 * 109.47181 * 59.99728 * 11 10 8 38 38 H 1.08001 * 119.99578 * 359.97438 * 13 12 11 39 39 H 1.07994 * 120.00232 * 180.20390 * 14 13 12 40 40 H 1.09001 * 109.47167 * 180.02562 * 18 16 15 41 41 H 1.09000 * 109.47405 * 300.00117 * 18 16 15 42 42 H 1.09003 * 109.47221 * 60.00071 * 18 16 15 43 43 H 0.96993 * 120.00072 * 335.00349 * 19 16 15 44 44 H 0.97003 * 119.99619 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.00455 * 179.97438 * 28 15 14 46 46 H 1.08006 * 119.99973 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 -0.0005 5 6 4.2023 0.1037 -0.0005 6 6 3.6091 -1.1478 -0.0006 7 6 2.2092 -1.2080 0.0059 8 6 1.4982 -2.5075 0.0129 9 8 0.2882 -2.5386 -0.0944 10 7 2.1934 -3.6553 0.1381 11 6 1.4902 -4.9406 0.1444 12 6 2.4891 -6.0589 0.2947 13 6 3.0501 -6.6401 -0.8270 14 6 3.9692 -7.6633 -0.6891 15 6 4.3210 -8.1112 0.5706 16 6 5.3195 -9.2298 0.7209 17 1 5.7356 -9.2124 1.7281 18 6 4.6233 -10.5707 0.4798 19 7 6.3975 -9.0567 -0.2560 20 6 7.6338 -9.5931 -0.0134 21 1 7.8144 -10.1434 0.8983 22 6 8.6555 -9.4287 -0.9387 23 7 9.8439 -9.9438 -0.7053 24 14 8.3433 -8.4763 -2.5151 25 1 8.6485 -7.0399 -2.2942 26 1 9.2141 -9.0070 -3.5946 27 1 6.9195 -8.6249 -2.9096 28 6 3.7565 -7.5332 1.6923 29 6 2.8402 -6.5074 1.5543 30 1 -0.3633 -0.1128 -1.0215 31 1 -0.3633 0.9411 0.4129 32 1 -0.3634 -0.8281 0.6084 33 1 5.2788 0.1913 -0.0014 34 1 4.2059 -2.0479 -0.0010 35 1 3.1592 -3.6305 0.2240 36 1 0.7874 -4.9661 0.9772 37 1 0.9473 -5.0624 -0.7929 38 1 2.7721 -6.2929 -1.8112 39 1 4.4099 -8.1151 -1.5654 40 1 5.3454 -11.3799 0.5890 41 1 3.8212 -10.6995 1.2066 42 1 4.2071 -10.5881 -0.5275 43 1 6.2354 -8.5622 -1.0745 44 1 10.5577 -9.8292 -1.3521 45 1 4.0309 -7.8833 2.6763 46 1 2.3989 -6.0560 2.4307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272692517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:21 Heat of formation + Delta-G solvation = 62.942373 kcal Electronic energy + Delta-G solvation = -27854.139814 eV Core-core repulsion = 23937.675518 eV Total energy + Delta-G solvation = -3916.464296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.76920 -40.10889 -39.36256 -36.37079 -35.08036 -34.16833 -33.72118 -32.40622 -31.02383 -30.70634 -29.11509 -28.56937 -26.75559 -25.44499 -23.81830 -23.42931 -22.86959 -21.78262 -21.41099 -19.94377 -18.75141 -18.19041 -18.01694 -16.34541 -16.28210 -16.15643 -16.01075 -15.63869 -15.31988 -14.97353 -14.91029 -14.38170 -14.16859 -13.93498 -13.71263 -13.46221 -13.39580 -13.21029 -12.95407 -12.80804 -12.59148 -12.45815 -12.34627 -11.89418 -11.51265 -11.45891 -11.19895 -11.00045 -10.83845 -10.78450 -10.77488 -10.45867 -10.22828 -10.16588 -9.96354 -9.68265 -9.56192 -9.09996 -8.91663 -8.59715 -7.40063 -5.86753 -3.23018 -0.18803 0.37462 1.17316 1.41278 2.27436 2.61837 3.11235 3.27051 3.29545 3.36715 3.53534 3.75458 3.83674 3.86842 4.14134 4.20832 4.46182 4.48923 4.72074 4.77430 4.92141 4.95148 5.01641 5.08226 5.12153 5.31166 5.31265 5.33313 5.45556 5.46176 5.50423 5.62861 5.67686 5.78876 5.81023 5.97487 5.99447 6.07700 6.11673 6.24720 6.39720 6.46617 6.50838 6.76613 6.90289 6.91282 7.01137 7.58297 7.88169 8.18660 8.31759 9.09054 9.81300 10.00340 11.31327 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.002410 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.099846 B =11617.497477 C =13100.459655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.124 3.876 3 N -0.246 5.246 4 N -0.221 5.221 5 C 0.030 3.970 6 C -0.079 4.079 7 C -0.136 4.136 8 C 0.562 3.438 9 O -0.519 6.519 10 N -0.714 5.714 11 C 0.167 3.833 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.053 4.053 16 C 0.209 3.791 17 H 0.066 0.934 18 C -0.160 4.160 19 N -0.745 5.745 20 C -0.245 4.245 21 H 0.092 0.908 22 C 0.007 3.993 23 N -0.931 5.931 24 Si 0.882 3.118 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.278 1.278 28 C -0.118 4.118 29 C -0.098 4.098 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.181 0.819 34 H 0.156 0.844 35 H 0.403 0.597 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.125 0.875 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.131 15.022 2.931 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.020 4.020 3 N -0.089 5.089 4 N -0.063 5.063 5 C -0.134 4.134 6 C -0.108 4.108 7 C -0.151 4.151 8 C 0.347 3.653 9 O -0.396 6.396 10 N -0.366 5.366 11 C 0.045 3.955 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.133 4.133 15 C -0.054 4.054 16 C 0.099 3.901 17 H 0.084 0.916 18 C -0.220 4.220 19 N -0.389 5.389 20 C -0.375 4.375 21 H 0.110 0.890 22 C -0.189 4.189 23 N -0.578 5.578 24 Si 0.712 3.288 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.204 1.204 28 C -0.136 4.136 29 C -0.117 4.117 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.198 0.802 34 H 0.174 0.826 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.195 0.805 44 H 0.071 0.929 45 H 0.143 0.857 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.853 16.514 2.952 25.236 hybrid contribution 0.818 -1.067 -1.245 1.832 sum -18.035 15.447 1.707 23.807 Atomic orbital electron populations 1.21001 0.86178 1.04581 1.04714 1.23183 0.99761 0.88510 0.90537 1.73122 1.01528 1.24011 1.10269 1.72900 0.99638 1.27858 1.05869 1.24362 1.03026 0.89110 0.96921 1.22750 0.94052 1.00722 0.93314 1.21081 0.94529 0.95647 1.03804 1.17875 0.86965 0.83134 0.77299 1.90765 1.13086 1.86809 1.48911 1.46072 1.11294 1.05575 1.73619 1.20228 0.92897 0.79146 1.03201 1.19626 1.00755 0.99157 0.93900 1.21016 0.96524 0.96249 0.97846 1.21060 0.97360 0.97062 0.97786 1.20581 0.95556 0.96325 0.92905 1.19234 0.86311 0.89738 0.94767 0.91620 1.22395 0.99787 0.99432 1.00420 1.42859 1.09008 1.66289 1.20743 1.19058 0.85506 1.27872 1.05064 0.89033 1.24660 0.95547 1.00461 0.98267 1.69691 1.01994 1.49552 1.36604 0.86598 0.77211 0.80290 0.84666 1.21030 1.21601 1.20447 1.21060 0.97325 0.96605 0.98623 1.20978 0.97518 0.96890 0.96284 0.89306 0.90454 0.87692 0.80158 0.82594 0.76096 0.90252 0.90286 0.86235 0.85820 0.91823 0.93947 0.93415 0.80470 0.92949 0.85702 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 8.99 36.01 0.32 -0.58 16 2 C 0.12 1.24 6.91 -82.00 -0.57 0.68 16 3 N -0.25 -2.82 11.42 33.81 0.39 -2.43 16 4 N -0.22 -2.38 11.48 30.53 0.35 -2.03 16 5 C 0.03 0.22 11.30 -17.42 -0.20 0.02 16 6 C -0.08 -0.53 9.68 -38.78 -0.38 -0.91 16 7 C -0.14 -1.20 5.92 -104.57 -0.62 -1.82 16 8 C 0.56 5.24 7.74 -12.20 -0.09 5.14 16 9 O -0.52 -6.01 13.52 5.35 0.07 -5.93 16 10 N -0.71 -5.59 5.51 -62.33 -0.34 -5.93 16 11 C 0.17 1.41 5.80 -5.19 -0.03 1.38 16 12 C -0.13 -1.32 5.25 -104.63 -0.55 -1.87 16 13 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 14 C -0.11 -1.60 9.06 -39.58 -0.36 -1.96 16 15 C -0.05 -0.77 4.95 -104.62 -0.52 -1.29 16 16 C 0.21 3.70 3.09 -69.08 -0.21 3.49 16 17 H 0.07 1.19 7.94 -51.93 -0.41 0.78 16 18 C -0.16 -2.62 9.47 37.16 0.35 -2.27 16 19 N -0.75 -16.49 4.87 -54.55 -0.27 -16.75 16 20 C -0.25 -6.57 10.41 -15.06 -0.16 -6.73 16 21 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -28.31 13.97 55.49 0.78 -27.53 16 24 Si 0.88 21.18 27.74 -169.99 -4.71 16.46 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 28 C -0.12 -1.44 9.67 -39.58 -0.38 -1.82 16 29 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.95 5.91 -51.93 -0.31 0.64 16 33 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.16 0.60 6.66 -52.49 -0.35 0.25 16 35 H 0.40 2.57 6.69 -40.82 -0.27 2.30 16 36 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.86 6.92 -52.49 -0.36 1.49 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.36 7.84 3.93 -40.82 -0.16 7.68 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.13 1.36 8.04 -52.49 -0.42 0.94 16 46 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -32.98 385.88 -8.27 -41.26 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.10 Total: 8.37 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -4.25 Total: -11.30 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.90 Total: -54.68 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: 0.07 Total: -5.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.98 -8.27 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272692517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.197 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds