Wall clock time and date at job start Tue Mar 31 2020 23:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31922 * 120.17342 * 2 1 4 4 N 1.28280 * 122.32731 * 180.02562 * 3 2 1 5 5 C 1.31918 * 122.51190 * 359.97438 * 4 3 2 6 6 C 1.38498 * 119.97291 * 0.02562 * 5 4 3 7 7 C 1.39724 * 120.16957 * 179.71820 * 2 1 3 8 8 C 1.48135 * 121.14749 * 359.97438 * 7 2 1 9 9 O 1.21517 * 119.99569 * 5.88403 * 8 7 2 10 10 N 1.34770 * 120.00147 * 185.87813 * 8 7 2 11 11 C 1.46509 * 120.00071 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47239 * 179.97438 * 11 10 8 13 13 C 1.38234 * 120.00056 * 269.72747 * 12 11 10 14 14 C 1.38232 * 120.00278 * 179.81152 * 13 12 11 15 15 C 1.38242 * 119.99661 * 0.41656 * 14 13 12 16 16 C 1.50698 * 119.99936 * 179.79292 * 15 14 13 17 17 H 1.08993 * 109.47116 * 160.02031 * 16 15 14 18 18 C 1.53001 * 109.46898 * 280.02079 * 16 15 14 19 19 N 1.46502 * 109.47084 * 40.01756 * 16 15 14 20 20 C 1.36934 * 119.99546 * 155.00292 * 19 16 15 21 21 H 1.08005 * 120.00590 * 359.97438 * 20 19 16 22 22 C 1.38817 * 120.00094 * 180.02562 * 20 19 16 23 23 N 1.31614 * 120.00210 * 179.97438 * 22 20 19 24 24 Si 1.86807 * 119.99413 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46846 * 90.00406 * 24 22 20 26 26 H 1.48503 * 109.46527 * 209.99973 * 24 22 20 27 27 H 1.48494 * 109.47282 * 330.00024 * 24 22 20 28 28 C 1.38233 * 120.00055 * 359.81027 * 15 14 13 29 29 C 1.38230 * 120.00081 * 89.99719 * 12 11 10 30 30 H 1.09000 * 109.47028 * 96.30249 * 1 2 3 31 31 H 1.09004 * 109.46672 * 336.30927 * 1 2 3 32 32 H 1.08994 * 109.47464 * 216.30641 * 1 2 3 33 33 H 1.08003 * 120.01439 * 179.97438 * 5 4 3 34 34 H 1.07998 * 121.09356 * 179.97438 * 6 5 4 35 35 H 0.96993 * 120.00313 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46716 * 300.00203 * 11 10 8 37 37 H 1.08997 * 109.47181 * 59.99728 * 11 10 8 38 38 H 1.08001 * 119.99578 * 359.97438 * 13 12 11 39 39 H 1.07994 * 120.00232 * 180.20390 * 14 13 12 40 40 H 1.09001 * 109.47167 * 180.02562 * 18 16 15 41 41 H 1.09000 * 109.47405 * 300.00117 * 18 16 15 42 42 H 1.09003 * 109.47221 * 60.00071 * 18 16 15 43 43 H 0.96993 * 120.00072 * 335.00349 * 19 16 15 44 44 H 0.97003 * 119.99619 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.00455 * 179.97438 * 28 15 14 46 46 H 1.08006 * 119.99973 * 359.97438 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 -0.0005 5 6 4.2023 0.1037 -0.0005 6 6 3.6091 -1.1478 -0.0006 7 6 2.2092 -1.2080 0.0059 8 6 1.4982 -2.5075 0.0129 9 8 0.2882 -2.5386 -0.0944 10 7 2.1934 -3.6553 0.1381 11 6 1.4902 -4.9406 0.1444 12 6 2.4891 -6.0589 0.2947 13 6 3.0501 -6.6401 -0.8270 14 6 3.9692 -7.6633 -0.6891 15 6 4.3210 -8.1112 0.5706 16 6 5.3195 -9.2298 0.7209 17 1 5.7356 -9.2124 1.7281 18 6 4.6233 -10.5707 0.4798 19 7 6.3975 -9.0567 -0.2560 20 6 7.6338 -9.5931 -0.0134 21 1 7.8144 -10.1434 0.8983 22 6 8.6555 -9.4287 -0.9387 23 7 9.8439 -9.9438 -0.7053 24 14 8.3433 -8.4763 -2.5151 25 1 8.6485 -7.0399 -2.2942 26 1 9.2141 -9.0070 -3.5946 27 1 6.9195 -8.6249 -2.9096 28 6 3.7565 -7.5332 1.6923 29 6 2.8402 -6.5074 1.5543 30 1 -0.3633 -0.1128 -1.0215 31 1 -0.3633 0.9411 0.4129 32 1 -0.3634 -0.8281 0.6084 33 1 5.2788 0.1913 -0.0014 34 1 4.2059 -2.0479 -0.0010 35 1 3.1592 -3.6305 0.2240 36 1 0.7874 -4.9661 0.9772 37 1 0.9473 -5.0624 -0.7929 38 1 2.7721 -6.2929 -1.8112 39 1 4.4099 -8.1151 -1.5654 40 1 5.3454 -11.3799 0.5890 41 1 3.8212 -10.6995 1.2066 42 1 4.2071 -10.5881 -0.5275 43 1 6.2354 -8.5622 -1.0745 44 1 10.5577 -9.8292 -1.3521 45 1 4.0309 -7.8833 2.6763 46 1 2.3989 -6.0560 2.4307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272692517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:20 Heat of formation + Delta-G solvation = 41.277974 kcal Electronic energy + Delta-G solvation = -27855.079253 eV Core-core repulsion = 23937.675518 eV Total energy + Delta-G solvation = -3917.403735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.42407 -40.91195 -40.24498 -37.61623 -36.07922 -34.84248 -34.54367 -34.00299 -32.18158 -31.78621 -30.49296 -29.32441 -27.57292 -26.28576 -25.48141 -24.12914 -23.82778 -22.90857 -22.10842 -21.19863 -19.93174 -19.39192 -18.83198 -17.25324 -17.02844 -16.95378 -16.81364 -16.67195 -16.23543 -16.16284 -15.73886 -15.61646 -15.26044 -14.84611 -14.73422 -14.55498 -14.34357 -14.26718 -13.97730 -13.88021 -13.83276 -13.53297 -13.30344 -13.04698 -12.93300 -12.73824 -12.48040 -12.11999 -12.09598 -11.94713 -11.72658 -11.57150 -11.52632 -11.41021 -11.04488 -10.90239 -10.64692 -10.22287 -9.81387 -9.60889 -9.32245 -8.01967 -5.35386 -0.81855 -0.22739 0.26040 0.51089 1.35544 1.39538 1.46929 1.59542 1.91790 2.46531 2.47923 2.85626 2.91394 3.24067 3.28427 3.29781 3.57129 3.60373 3.62988 3.73710 3.92059 3.96332 4.14106 4.21684 4.32717 4.38292 4.47446 4.52128 4.58011 4.67305 4.69215 4.71241 4.78251 4.89381 4.95310 5.03862 5.05467 5.08537 5.15319 5.20793 5.32897 5.39233 5.52491 5.60885 5.73717 5.82127 6.06800 6.22410 6.29006 6.93591 7.07764 7.53204 7.83022 8.02508 9.19477 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.002410 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.099846 B =11617.497477 C =13100.459655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.112 3.888 3 N -0.278 5.278 4 N -0.254 5.254 5 C 0.033 3.967 6 C -0.062 4.062 7 C -0.146 4.146 8 C 0.566 3.434 9 O -0.544 6.544 10 N -0.703 5.703 11 C 0.172 3.828 12 C -0.116 4.116 13 C -0.094 4.094 14 C -0.130 4.130 15 C -0.073 4.073 16 C 0.203 3.797 17 H 0.055 0.945 18 C -0.152 4.152 19 N -0.748 5.748 20 C -0.227 4.227 21 H 0.058 0.942 22 C -0.064 4.064 23 N -0.984 5.984 24 Si 0.950 3.050 25 H -0.276 1.276 26 H -0.298 1.298 27 H -0.252 1.252 28 C -0.121 4.121 29 C -0.089 4.089 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.215 0.785 34 H 0.191 0.809 35 H 0.413 0.587 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.366 0.634 44 H 0.257 0.743 45 H 0.134 0.866 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.916 16.346 2.663 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.034 4.034 3 N -0.120 5.120 4 N -0.095 5.095 5 C -0.132 4.132 6 C -0.092 4.092 7 C -0.160 4.160 8 C 0.352 3.648 9 O -0.423 6.423 10 N -0.355 5.355 11 C 0.049 3.951 12 C -0.117 4.117 13 C -0.112 4.112 14 C -0.149 4.149 15 C -0.074 4.074 16 C 0.095 3.905 17 H 0.073 0.927 18 C -0.211 4.211 19 N -0.392 5.392 20 C -0.358 4.358 21 H 0.076 0.924 22 C -0.256 4.256 23 N -0.634 5.634 24 Si 0.777 3.223 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.177 1.177 28 C -0.139 4.139 29 C -0.107 4.107 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.231 0.769 34 H 0.208 0.792 35 H 0.250 0.750 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.127 0.873 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.152 0.848 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.696 17.857 2.707 27.468 hybrid contribution 1.318 -1.517 -1.035 2.260 sum -19.378 16.340 1.672 25.403 Atomic orbital electron populations 1.20953 0.85772 1.04590 1.04648 1.23366 1.00284 0.88871 0.90831 1.73054 1.02184 1.24965 1.11764 1.72802 0.99701 1.29743 1.07234 1.24927 1.04351 0.88604 0.95285 1.23127 0.93328 1.01752 0.90989 1.21093 0.95484 0.94948 1.04493 1.17880 0.86613 0.83453 0.76871 1.90762 1.14221 1.87123 1.50204 1.45927 1.11718 1.04939 1.72940 1.20193 0.92466 0.78639 1.03774 1.19733 0.99832 0.98728 0.93364 1.21169 0.95508 0.95237 0.99294 1.21007 0.98668 0.98348 0.96865 1.20259 0.96339 0.96474 0.94341 1.19368 0.86128 0.91935 0.93025 0.92691 1.22256 0.99808 0.97645 1.01423 1.42856 1.08420 1.65972 1.21983 1.19020 0.87324 1.26090 1.03360 0.92359 1.25468 0.95345 1.02495 1.02251 1.69878 1.03257 1.52210 1.38102 0.85490 0.78234 0.78775 0.79782 1.20153 1.22542 1.17655 1.21188 0.97546 0.96922 0.98236 1.21241 0.96292 0.95723 0.97449 0.89255 0.89960 0.88213 0.76880 0.79208 0.74991 0.89497 0.90042 0.84404 0.87325 0.94329 0.91031 0.93270 0.79994 0.93410 0.84773 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 8.99 71.24 0.64 -1.04 16 2 C 0.11 2.13 6.91 42.91 0.30 2.43 16 3 N -0.28 -6.23 11.42 -46.95 -0.54 -6.77 16 4 N -0.25 -5.18 11.48 -57.34 -0.66 -5.84 16 5 C 0.03 0.40 11.30 84.74 0.96 1.36 16 6 C -0.06 -0.63 9.68 22.79 0.22 -0.41 16 7 C -0.15 -2.23 5.92 -19.83 -0.12 -2.35 16 8 C 0.57 8.98 7.74 86.87 0.67 9.65 16 9 O -0.54 -11.50 13.52 -3.77 -0.05 -11.55 16 10 N -0.70 -8.20 5.51 -469.42 -2.59 -10.78 16 11 C 0.17 2.17 5.80 85.63 0.50 2.67 16 12 C -0.12 -1.79 5.25 -19.87 -0.10 -1.89 16 13 C -0.09 -1.76 9.70 22.27 0.22 -1.55 16 14 C -0.13 -3.34 9.06 22.27 0.20 -3.14 16 15 C -0.07 -2.01 4.95 -19.87 -0.10 -2.11 16 16 C 0.20 7.10 3.09 44.24 0.14 7.24 16 17 H 0.06 2.01 7.94 -2.39 -0.02 1.99 16 18 C -0.15 -4.87 9.47 71.98 0.68 -4.19 16 19 N -0.75 -32.89 4.87 -326.50 -1.59 -34.48 16 20 C -0.23 -12.43 10.41 84.04 0.87 -11.56 16 21 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 22 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 23 N -0.98 -61.75 13.97 21.65 0.30 -61.45 16 24 Si 0.95 43.72 27.74 68.60 1.90 45.62 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 27 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 28 C -0.12 -2.59 9.67 22.27 0.22 -2.37 16 29 C -0.09 -1.43 9.70 22.27 0.22 -1.21 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.10 1.75 5.91 -2.39 -0.01 1.73 16 33 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.19 0.51 6.66 -2.91 -0.02 0.49 16 35 H 0.41 3.30 6.69 -92.71 -0.62 2.68 16 36 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 37 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.11 3.07 6.92 -2.91 -0.02 3.05 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.37 15.38 3.93 -92.71 -0.36 15.02 16 44 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.13 2.57 8.04 -2.91 -0.02 2.54 16 46 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -74.61 385.88 2.74 -71.87 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.02 Total: 25.05 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.97 Total: -11.67 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -5.07 Total: -119.32 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.05 Total: -11.55 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.90 Total: 45.62 kcal Total: -74.61 2.74 -71.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272692517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.147 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds