Wall clock time and date at job start Tue Mar 31 2020 23:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31914 * 119.04179 * 2 1 4 4 C 1.32168 * 121.03689 * 179.97438 * 3 2 1 5 5 C 1.38805 * 119.14805 * 359.97438 * 4 3 2 6 6 C 1.39499 * 118.26209 * 359.97438 * 5 4 3 7 7 C 1.48452 * 120.55178 * 180.02562 * 6 5 4 8 8 O 1.21474 * 119.99665 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99891 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99797 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.38234 * 119.99974 * 90.00190 * 11 10 9 13 13 C 1.38229 * 120.00103 * 180.02562 * 12 11 10 14 14 C 1.38242 * 120.00049 * 359.95024 * 13 12 11 15 15 C 1.50697 * 120.00178 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47420 * 340.00426 * 15 14 13 17 17 C 1.53006 * 109.46954 * 100.00234 * 15 14 13 18 18 N 1.46493 * 109.47479 * 220.00062 * 15 14 13 19 19 C 1.36936 * 120.00314 * 154.99980 * 18 15 14 20 20 H 1.08001 * 120.00159 * 0.02562 * 19 18 15 21 21 C 1.38811 * 119.99842 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 179.72505 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.38230 * 119.99726 * 0.27887 * 14 13 12 28 28 C 1.38235 * 119.99970 * 269.97600 * 11 10 9 29 29 N 1.31547 * 119.04304 * 180.27312 * 2 1 3 30 30 H 1.09007 * 109.46659 * 90.00430 * 1 2 3 31 31 H 1.08998 * 109.47327 * 210.00062 * 1 2 3 32 32 H 1.08998 * 109.47341 * 330.00769 * 1 2 3 33 33 H 1.08004 * 120.43165 * 180.02562 * 4 3 2 34 34 H 1.07993 * 120.87129 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99953 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.47202 * 60.00169 * 10 9 7 37 37 H 1.09011 * 109.46831 * 300.00354 * 10 9 7 38 38 H 1.08004 * 120.00354 * 359.97438 * 12 11 10 39 39 H 1.08004 * 120.00662 * 179.97438 * 13 12 11 40 40 H 1.08995 * 109.47185 * 59.99905 * 17 15 14 41 41 H 1.08997 * 109.47326 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.47067 * 300.00148 * 17 15 14 43 43 H 0.97000 * 120.00040 * 335.00112 * 18 15 14 44 44 H 0.96999 * 119.99889 * 180.27497 * 22 21 19 45 45 H 1.07998 * 120.00233 * 179.72434 * 27 14 13 46 46 H 1.07995 * 119.99552 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4682 1.1993 0.0005 5 6 4.1861 0.0113 0.0016 6 6 3.4761 -1.1895 0.0026 7 6 4.1925 -2.4897 0.0044 8 8 5.4070 -2.5140 0.0054 9 7 3.4953 -3.6432 0.0059 10 6 4.2023 -4.9263 0.0082 11 6 3.2003 -6.0519 0.0090 12 6 2.7418 -6.5698 -1.1879 13 6 1.8223 -7.6019 -1.1872 14 6 1.3621 -8.1169 0.0103 15 6 0.3601 -9.2425 0.0110 16 1 -0.1435 -9.2814 -0.9549 17 6 1.0820 -10.5678 0.2634 18 7 -0.6283 -9.0159 1.0683 19 6 -1.8784 -9.5653 0.9662 20 1 -2.1357 -10.1661 0.1063 21 6 -2.8151 -9.3501 1.9678 22 7 -4.0184 -9.8737 1.8669 23 14 -2.3705 -8.3103 3.4546 24 1 -1.8092 -9.1818 4.5180 25 1 -1.3612 -7.2936 3.0637 26 1 -3.5876 -7.6291 3.9641 27 6 1.8171 -7.5959 1.2071 28 6 2.7402 -6.5669 1.2064 29 7 2.1456 -1.1500 -0.0055 30 1 -0.3633 -0.0001 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 3.9825 2.1490 0.0009 34 1 5.2660 0.0164 0.0016 35 1 2.5256 -3.6238 0.0055 36 1 4.8273 -4.9952 0.8985 37 1 4.8282 -4.9979 -0.8815 38 1 3.1012 -6.1675 -2.1235 39 1 1.4636 -8.0064 -2.1222 40 1 1.5856 -10.5290 1.2293 41 1 0.3574 -11.3820 0.2635 42 1 1.8174 -10.7365 -0.5233 43 1 -0.3972 -8.4766 1.8407 44 1 -4.6743 -9.7200 2.5649 45 1 1.4542 -7.9952 2.1426 46 1 3.0985 -6.1622 2.1414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272708611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:28 Heat of formation + Delta-G solvation = 51.261689 kcal Electronic energy + Delta-G solvation = -27762.492792 eV Core-core repulsion = 23845.521983 eV Total energy + Delta-G solvation = -3916.970809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.68791 -39.98683 -39.23533 -36.23102 -34.87575 -34.24029 -33.66719 -32.35524 -30.92166 -30.59363 -28.92989 -28.92291 -26.89709 -25.28266 -23.78921 -23.33422 -22.75020 -21.62695 -21.16347 -19.85316 -18.77992 -18.08092 -17.93284 -16.31991 -16.15132 -16.07766 -15.70723 -15.58759 -15.28693 -14.94497 -14.82057 -14.31789 -14.06277 -13.83793 -13.79532 -13.36045 -13.31294 -13.02543 -12.86795 -12.76125 -12.66052 -12.37561 -12.27869 -11.82837 -11.45150 -11.41657 -11.29558 -11.11218 -10.93757 -10.84165 -10.72423 -10.37842 -10.08198 -9.99009 -9.79138 -9.62694 -9.42845 -9.04113 -8.80617 -8.49139 -7.33850 -5.81332 -3.17204 0.04127 0.43770 1.28810 1.52289 2.34454 2.69541 3.33674 3.34058 3.35883 3.36067 3.41939 3.55919 3.88711 4.17021 4.37672 4.51671 4.54707 4.55364 4.82108 4.93815 4.99074 5.05581 5.10881 5.18768 5.21477 5.32541 5.40273 5.43878 5.49926 5.50803 5.59667 5.77386 5.87146 5.88770 5.98929 6.09264 6.16088 6.19021 6.31957 6.35290 6.48448 6.56911 6.59348 6.83655 6.98748 7.08605 7.12376 7.51153 7.72998 7.94011 8.37398 9.14960 9.87367 10.06626 11.36828 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.002570 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.382350 B =10890.878186 C =12628.413693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.320 3.680 3 N -0.506 5.506 4 C 0.154 3.846 5 C -0.179 4.179 6 C 0.136 3.864 7 C 0.569 3.431 8 O -0.528 6.528 9 N -0.699 5.699 10 C 0.165 3.835 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.118 4.118 14 C -0.054 4.054 15 C 0.209 3.791 16 H 0.065 0.935 17 C -0.160 4.160 18 N -0.745 5.745 19 C -0.244 4.244 20 H 0.092 0.908 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.880 3.120 24 H -0.284 1.284 25 H -0.276 1.276 26 H -0.290 1.290 27 C -0.113 4.113 28 C -0.097 4.097 29 N -0.494 5.494 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.416 0.584 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.123 0.877 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.575 19.181 -5.433 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.221 5.221 4 C -0.014 4.014 5 C -0.202 4.202 6 C -0.012 4.012 7 C 0.352 3.648 8 O -0.403 6.403 9 N -0.350 5.350 10 C 0.042 3.958 11 C -0.132 4.132 12 C -0.116 4.116 13 C -0.136 4.136 14 C -0.055 4.055 15 C 0.100 3.900 16 H 0.083 0.917 17 C -0.220 4.220 18 N -0.389 5.389 19 C -0.373 4.373 20 H 0.110 0.890 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.710 3.290 24 H -0.210 1.210 25 H -0.202 1.202 26 H -0.216 1.216 27 C -0.132 4.132 28 C -0.115 4.115 29 N -0.212 5.212 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.253 0.747 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.196 0.804 44 H 0.070 0.930 45 H 0.141 0.859 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.236 18.961 -5.513 26.211 hybrid contribution 0.661 0.737 1.192 1.549 sum 17.897 19.698 -4.321 26.963 Atomic orbital electron populations 1.20657 0.84891 1.04774 1.04402 1.23331 0.98463 0.82793 0.90078 1.68245 1.10466 1.30428 1.12943 1.23392 0.89435 0.98704 0.89820 1.22962 1.03894 0.92965 1.00409 1.21639 0.89958 0.94713 0.94904 1.17805 0.86523 0.82988 0.77479 1.90802 1.12620 1.86946 1.49945 1.46032 1.11700 1.04810 1.72448 1.20258 0.92896 0.79431 1.03170 1.19611 1.00759 0.98901 0.93904 1.20961 0.97093 0.96530 0.97011 1.21040 0.97776 0.96928 0.97881 1.20556 0.95633 0.96447 0.92852 1.19227 0.87380 0.89631 0.93772 0.91684 1.22389 0.99903 0.99454 1.00239 1.42869 1.11746 1.62219 1.22080 1.19062 0.87019 1.25336 1.05929 0.89046 1.24651 0.95708 1.00243 0.98353 1.69696 1.04341 1.48945 1.34996 0.86614 0.77478 0.80735 0.84150 1.21015 1.20247 1.21610 1.21019 0.96926 0.96752 0.98459 1.21002 0.96953 0.96456 0.97133 1.68219 1.08610 1.31337 1.13002 0.89160 0.89035 0.89268 0.80490 0.82133 0.74749 0.90341 0.90317 0.86243 0.85752 0.93410 0.91857 0.93954 0.80438 0.92999 0.85934 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.31 36.00 0.37 -0.26 16 2 C 0.32 3.12 7.64 -157.30 -1.20 1.92 16 3 N -0.51 -4.70 10.32 -10.74 -0.11 -4.81 16 4 C 0.15 1.11 11.31 -17.20 -0.19 0.91 16 5 C -0.18 -1.48 9.72 -38.90 -0.38 -1.86 16 6 C 0.14 1.43 6.79 -82.63 -0.56 0.87 16 7 C 0.57 6.57 7.83 -12.05 -0.09 6.48 16 8 O -0.53 -7.17 16.43 5.39 0.09 -7.08 16 9 N -0.70 -7.45 5.54 -62.24 -0.34 -7.79 16 10 C 0.16 1.69 5.80 -5.20 -0.03 1.66 16 11 C -0.13 -1.52 5.25 -104.63 -0.55 -2.07 16 12 C -0.10 -1.14 9.70 -39.59 -0.38 -1.52 16 13 C -0.12 -1.59 9.67 -39.58 -0.38 -1.97 16 14 C -0.05 -0.85 4.96 -104.63 -0.52 -1.37 16 15 C 0.21 3.89 3.09 -69.08 -0.21 3.68 16 16 H 0.07 1.24 7.94 -51.93 -0.41 0.82 16 17 C -0.16 -2.71 9.47 37.16 0.35 -2.36 16 18 N -0.75 -17.12 4.87 -54.55 -0.27 -17.38 16 19 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -28.86 13.97 55.49 0.78 -28.09 16 23 Si 0.88 21.75 27.74 -169.99 -4.72 17.03 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.42 6.51 56.52 0.37 -6.06 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 C -0.11 -1.73 9.06 -39.58 -0.36 -2.09 16 28 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 16 29 N -0.49 -5.29 9.60 -7.32 -0.07 -5.36 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.18 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.16 1.09 7.74 -52.49 -0.41 0.69 16 35 H 0.42 4.41 7.85 -40.82 -0.32 4.09 16 36 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.08 0.77 8.09 -51.92 -0.42 0.35 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.12 1.49 8.04 -52.48 -0.42 1.07 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.36 8.17 3.91 -40.82 -0.16 8.01 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.12 1.96 6.90 -52.49 -0.36 1.59 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -33.42 393.34 -9.82 -43.24 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.32 Total: 10.69 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.78 Total: -6.37 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -0.02 Total: -63.43 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.09 Total: -7.08 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.03 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.42 -9.82 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272708611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.501 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds