Wall clock time and date at job start Tue Mar 31 2020 23:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31914 * 119.04179 * 2 1 4 4 C 1.32168 * 121.03689 * 179.97438 * 3 2 1 5 5 C 1.38805 * 119.14805 * 359.97438 * 4 3 2 6 6 C 1.39499 * 118.26209 * 359.97438 * 5 4 3 7 7 C 1.48452 * 120.55178 * 180.02562 * 6 5 4 8 8 O 1.21474 * 119.99665 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99891 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99797 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.38234 * 119.99974 * 90.00190 * 11 10 9 13 13 C 1.38229 * 120.00103 * 180.02562 * 12 11 10 14 14 C 1.38242 * 120.00049 * 359.95024 * 13 12 11 15 15 C 1.50697 * 120.00178 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47420 * 340.00426 * 15 14 13 17 17 C 1.53006 * 109.46954 * 100.00234 * 15 14 13 18 18 N 1.46493 * 109.47479 * 220.00062 * 15 14 13 19 19 C 1.36936 * 120.00314 * 154.99980 * 18 15 14 20 20 H 1.08001 * 120.00159 * 0.02562 * 19 18 15 21 21 C 1.38811 * 119.99842 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 179.72505 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.38230 * 119.99726 * 0.27887 * 14 13 12 28 28 C 1.38235 * 119.99970 * 269.97600 * 11 10 9 29 29 N 1.31547 * 119.04304 * 180.27312 * 2 1 3 30 30 H 1.09007 * 109.46659 * 90.00430 * 1 2 3 31 31 H 1.08998 * 109.47327 * 210.00062 * 1 2 3 32 32 H 1.08998 * 109.47341 * 330.00769 * 1 2 3 33 33 H 1.08004 * 120.43165 * 180.02562 * 4 3 2 34 34 H 1.07993 * 120.87129 * 179.97438 * 5 4 3 35 35 H 0.96999 * 119.99953 * 0.02562 * 9 7 6 36 36 H 1.08994 * 109.47202 * 60.00169 * 10 9 7 37 37 H 1.09011 * 109.46831 * 300.00354 * 10 9 7 38 38 H 1.08004 * 120.00354 * 359.97438 * 12 11 10 39 39 H 1.08004 * 120.00662 * 179.97438 * 13 12 11 40 40 H 1.08995 * 109.47185 * 59.99905 * 17 15 14 41 41 H 1.08997 * 109.47326 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.47067 * 300.00148 * 17 15 14 43 43 H 0.97000 * 120.00040 * 335.00112 * 18 15 14 44 44 H 0.96999 * 119.99889 * 180.27497 * 22 21 19 45 45 H 1.07998 * 120.00233 * 179.72434 * 27 14 13 46 46 H 1.07995 * 119.99552 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1473 1.1533 0.0000 4 6 3.4682 1.1993 0.0005 5 6 4.1861 0.0113 0.0016 6 6 3.4761 -1.1895 0.0026 7 6 4.1925 -2.4897 0.0044 8 8 5.4070 -2.5140 0.0054 9 7 3.4953 -3.6432 0.0059 10 6 4.2023 -4.9263 0.0082 11 6 3.2003 -6.0519 0.0090 12 6 2.7418 -6.5698 -1.1879 13 6 1.8223 -7.6019 -1.1872 14 6 1.3621 -8.1169 0.0103 15 6 0.3601 -9.2425 0.0110 16 1 -0.1435 -9.2814 -0.9549 17 6 1.0820 -10.5678 0.2634 18 7 -0.6283 -9.0159 1.0683 19 6 -1.8784 -9.5653 0.9662 20 1 -2.1357 -10.1661 0.1063 21 6 -2.8151 -9.3501 1.9678 22 7 -4.0184 -9.8737 1.8669 23 14 -2.3705 -8.3103 3.4546 24 1 -1.8092 -9.1818 4.5180 25 1 -1.3612 -7.2936 3.0637 26 1 -3.5876 -7.6291 3.9641 27 6 1.8171 -7.5959 1.2071 28 6 2.7402 -6.5669 1.2064 29 7 2.1456 -1.1500 -0.0055 30 1 -0.3633 -0.0001 -1.0278 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 3.9825 2.1490 0.0009 34 1 5.2660 0.0164 0.0016 35 1 2.5256 -3.6238 0.0055 36 1 4.8273 -4.9952 0.8985 37 1 4.8282 -4.9979 -0.8815 38 1 3.1012 -6.1675 -2.1235 39 1 1.4636 -8.0064 -2.1222 40 1 1.5856 -10.5290 1.2293 41 1 0.3574 -11.3820 0.2635 42 1 1.8174 -10.7365 -0.5233 43 1 -0.3972 -8.4766 1.8407 44 1 -4.6743 -9.7200 2.5649 45 1 1.4542 -7.9952 2.1426 46 1 3.0985 -6.1622 2.1414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272708611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:27 Heat of formation + Delta-G solvation = 29.710596 kcal Electronic energy + Delta-G solvation = -27763.427318 eV Core-core repulsion = 23845.521983 eV Total energy + Delta-G solvation = -3917.905334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36529 -40.92596 -40.24333 -37.61394 -35.98197 -35.01386 -34.28932 -34.14428 -32.20483 -31.80900 -30.45539 -29.51255 -27.83059 -26.21453 -25.46408 -24.12992 -23.80254 -22.86125 -21.97608 -21.20483 -19.93998 -19.55717 -18.69917 -17.34456 -17.07984 -16.93258 -16.74524 -16.57941 -16.19818 -16.15847 -15.75747 -15.66572 -15.27317 -14.88500 -14.73980 -14.57437 -14.39954 -14.29202 -13.95395 -13.84958 -13.69285 -13.45013 -13.28110 -13.12682 -12.94028 -12.74009 -12.54180 -12.11790 -12.07087 -11.99794 -11.93921 -11.75806 -11.72157 -11.55960 -11.05765 -10.63246 -10.48582 -10.27056 -9.83530 -9.62748 -9.32989 -8.02703 -5.35838 -0.66669 -0.16996 0.24180 0.48977 1.35493 1.38329 1.45546 1.54505 1.87874 2.47102 2.64936 2.66316 2.87106 3.00482 3.29490 3.48969 3.60008 3.62132 3.70908 3.88674 3.93652 3.97076 4.11152 4.29347 4.36699 4.43549 4.50138 4.55857 4.62649 4.68484 4.70401 4.75285 4.79783 4.94978 4.98518 5.03121 5.07156 5.15137 5.18942 5.29987 5.38168 5.50801 5.58336 5.70333 5.71888 5.80599 6.04532 6.21949 6.26367 6.80995 6.92500 7.06918 7.82445 8.01690 9.18805 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011205 B = 0.002570 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.382350 B =10890.878186 C =12628.413693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.306 3.694 3 N -0.518 5.518 4 C 0.162 3.838 5 C -0.176 4.176 6 C 0.114 3.886 7 C 0.570 3.430 8 O -0.552 6.552 9 N -0.695 5.695 10 C 0.168 3.832 11 C -0.118 4.118 12 C -0.090 4.090 13 C -0.120 4.120 14 C -0.073 4.073 15 C 0.204 3.796 16 H 0.055 0.945 17 C -0.151 4.151 18 N -0.749 5.749 19 C -0.226 4.226 20 H 0.060 0.940 21 C -0.063 4.063 22 N -0.983 5.983 23 Si 0.947 3.053 24 H -0.278 1.278 25 H -0.253 1.253 26 H -0.295 1.295 27 C -0.129 4.129 28 C -0.096 4.096 29 N -0.511 5.511 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.218 0.782 34 H 0.175 0.825 35 H 0.416 0.584 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.365 0.635 44 H 0.257 0.743 45 H 0.111 0.889 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.191 21.778 -5.580 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.039 3.961 3 N -0.233 5.233 4 C -0.006 4.006 5 C -0.199 4.199 6 C -0.033 4.033 7 C 0.354 3.646 8 O -0.429 6.429 9 N -0.345 5.345 10 C 0.046 3.954 11 C -0.118 4.118 12 C -0.108 4.108 13 C -0.138 4.138 14 C -0.074 4.074 15 C 0.096 3.904 16 H 0.073 0.927 17 C -0.210 4.210 18 N -0.393 5.393 19 C -0.357 4.357 20 H 0.078 0.922 21 C -0.254 4.254 22 N -0.634 5.634 23 Si 0.775 3.225 24 H -0.204 1.204 25 H -0.178 1.178 26 H -0.222 1.222 27 C -0.148 4.148 28 C -0.114 4.114 29 N -0.229 5.229 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.234 0.766 34 H 0.192 0.808 35 H 0.253 0.747 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.199 0.801 44 H 0.066 0.934 45 H 0.129 0.871 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 19.904 21.552 -5.685 29.883 hybrid contribution -0.050 -0.038 1.108 1.110 sum 19.854 21.514 -4.577 29.631 Atomic orbital electron populations 1.20719 0.83648 1.05114 1.05061 1.23759 0.99442 0.82809 0.90089 1.68328 1.11512 1.30176 1.13330 1.24066 0.88813 0.99912 0.87813 1.23197 1.04617 0.92587 0.99472 1.21648 0.90289 0.94934 0.96458 1.17952 0.86255 0.83479 0.76868 1.90783 1.13528 1.87341 1.51295 1.46001 1.11697 1.04815 1.72025 1.20265 0.92465 0.78729 1.03944 1.19742 1.00048 0.98557 0.93477 1.21231 0.95930 0.95444 0.98222 1.21192 0.97963 0.97202 0.97465 1.20281 0.96333 0.96558 0.94265 1.19368 0.87354 0.91792 0.91874 0.92665 1.22242 0.99749 0.97525 1.01500 1.42880 1.10977 1.61946 1.23516 1.19031 0.88680 1.23703 1.04311 0.92198 1.25434 0.95706 1.02444 1.01826 1.69873 1.05773 1.51436 1.36308 0.85521 0.77379 0.79440 0.80185 1.20432 1.17808 1.22198 1.21000 0.98140 0.97931 0.97717 1.21159 0.96144 0.95628 0.98467 1.68190 1.08810 1.31970 1.13887 0.88283 0.89299 0.88275 0.76565 0.80771 0.74676 0.89902 0.89329 0.83593 0.84537 0.93181 0.94167 0.90980 0.80063 0.93376 0.87127 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 10.31 71.24 0.73 -0.40 16 2 C 0.31 5.54 7.64 138.79 1.06 6.60 16 3 N -0.52 -8.57 10.32 -187.88 -1.94 -10.51 16 4 C 0.16 1.88 11.31 84.78 0.96 2.84 16 5 C -0.18 -2.53 9.72 22.71 0.22 -2.31 16 6 C 0.11 2.22 6.79 41.98 0.29 2.51 16 7 C 0.57 12.24 7.83 86.97 0.68 12.92 16 8 O -0.55 -14.08 16.43 -3.63 -0.06 -14.14 16 9 N -0.69 -13.36 5.54 -469.12 -2.60 -15.96 16 10 C 0.17 2.99 5.80 85.63 0.50 3.48 16 11 C -0.12 -2.38 5.25 -19.87 -0.10 -2.48 16 12 C -0.09 -1.82 9.70 22.27 0.22 -1.61 16 13 C -0.12 -2.97 9.67 22.27 0.22 -2.75 16 14 C -0.07 -2.24 4.96 -19.87 -0.10 -2.34 16 15 C 0.20 7.55 3.09 44.25 0.14 7.69 16 16 H 0.06 2.13 7.94 -2.39 -0.02 2.11 16 17 C -0.15 -5.04 9.47 71.98 0.68 -4.36 16 18 N -0.75 -34.52 4.87 -326.51 -1.59 -36.12 16 19 C -0.23 -12.77 10.41 84.03 0.87 -11.90 16 20 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 21 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 22 N -0.98 -62.93 13.97 21.65 0.30 -62.63 16 23 Si 0.95 45.40 27.74 68.60 1.90 47.31 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.25 -11.02 6.51 99.48 0.65 -10.38 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 C -0.13 -3.76 9.06 22.27 0.20 -3.56 16 28 C -0.10 -2.22 9.70 22.27 0.22 -2.00 16 29 N -0.51 -10.30 9.60 -177.09 -1.70 -12.00 16 30 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.22 0.59 8.06 -2.91 -0.02 0.57 16 34 H 0.17 1.95 7.74 -2.91 -0.02 1.93 16 35 H 0.42 8.05 7.85 -92.71 -0.73 7.32 16 36 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 37 H 0.09 1.46 8.09 -2.38 -0.02 1.44 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.14 2.98 8.04 -2.91 -0.02 2.96 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.36 16.25 3.91 -92.71 -0.36 15.89 16 44 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.11 3.42 6.90 -2.91 -0.02 3.40 16 46 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -73.88 393.34 1.43 -72.45 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.13 Total: 32.49 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 7.24 Total: -0.90 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -7.53 Total: -137.21 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.06 Total: -14.14 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Total: -73.88 1.43 -72.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272708611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.161 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds