Wall clock time and date at job start Tue Mar 31 2020 23:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31911 * 119.04244 * 2 1 4 4 C 1.32177 * 121.03429 * 179.97438 * 3 2 1 5 5 C 1.38804 * 119.14785 * 359.97438 * 4 3 2 6 6 C 1.39494 * 118.26052 * 0.25357 * 5 4 3 7 7 C 1.48459 * 120.54698 * 179.72252 * 6 5 4 8 8 O 1.21479 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99638 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99766 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47209 * 180.02562 * 10 9 7 12 12 C 1.38234 * 119.99625 * 269.71986 * 11 10 9 13 13 C 1.38234 * 119.99787 * 179.74154 * 12 11 10 14 14 C 1.38233 * 120.00020 * 0.55963 * 13 12 11 15 15 C 1.50703 * 120.00350 * 179.72296 * 14 13 12 16 16 H 1.08997 * 109.47154 * 199.97426 * 15 14 13 17 17 C 1.52997 * 109.46965 * 79.97374 * 15 14 13 18 18 N 1.46497 * 109.46658 * 319.97372 * 15 14 13 19 19 C 1.36943 * 119.99781 * 204.99648 * 18 15 14 20 20 H 1.08000 * 119.99971 * 0.02562 * 19 18 15 21 21 C 1.38811 * 119.99824 * 180.02562 * 19 18 15 22 22 N 1.31622 * 120.00047 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00057 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47181 * 89.99667 * 23 21 19 25 25 H 1.48497 * 109.47018 * 210.00048 * 23 21 19 26 26 H 1.48498 * 109.46689 * 329.99952 * 23 21 19 27 27 C 1.38233 * 119.99989 * 359.69474 * 14 13 12 28 28 C 1.38228 * 119.99980 * 89.99763 * 11 10 9 29 29 N 1.31554 * 119.04174 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47058 * 89.99856 * 1 2 3 31 31 H 1.08998 * 109.46823 * 210.00046 * 1 2 3 32 32 H 1.08999 * 109.46824 * 329.99788 * 1 2 3 33 33 H 1.08003 * 120.42615 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.86546 * 179.97438 * 5 4 3 35 35 H 0.96997 * 120.00614 * 0.02562 * 9 7 6 36 36 H 1.09007 * 109.46514 * 300.00102 * 10 9 7 37 37 H 1.08995 * 109.47352 * 59.99482 * 10 9 7 38 38 H 1.08004 * 120.00277 * 0.02562 * 12 11 10 39 39 H 1.07999 * 119.99964 * 180.27905 * 13 12 11 40 40 H 1.08997 * 109.47227 * 300.00007 * 17 15 14 41 41 H 1.09002 * 109.47309 * 60.00406 * 17 15 14 42 42 H 1.09001 * 109.47106 * 180.02562 * 17 15 14 43 43 H 0.97004 * 120.00584 * 25.00412 * 18 15 14 44 44 H 0.96998 * 120.00043 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.00667 * 180.02562 * 27 14 13 46 46 H 1.07999 * 120.00327 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1532 0.0000 4 6 3.4683 1.1992 0.0005 5 6 4.1861 0.0111 0.0016 6 6 3.4761 -1.1895 -0.0033 7 6 4.1925 -2.4898 -0.0086 8 8 5.4070 -2.5140 -0.0082 9 7 3.4953 -3.6432 -0.0139 10 6 4.2023 -4.9264 -0.0186 11 6 3.2003 -6.0520 -0.0246 12 6 2.7437 -6.5772 1.1698 13 6 1.8206 -7.6061 1.1644 14 6 1.3627 -8.1176 -0.0355 15 6 0.3610 -9.2435 -0.0415 16 1 0.3831 -9.7442 -1.0094 17 6 -1.0395 -8.6813 0.2101 18 7 0.6987 -10.2031 1.0126 19 6 0.2983 -11.5082 0.9044 20 1 -0.2661 -11.8300 0.0417 21 6 0.6179 -12.4173 1.9035 22 7 1.3053 -12.0249 2.9551 23 14 0.0724 -14.1977 1.7555 24 1 1.1207 -14.9799 1.0523 25 1 -0.1419 -14.7641 3.1114 26 1 -1.1954 -14.2645 0.9851 27 6 1.8233 -7.5959 -1.2299 28 6 2.7422 -6.5630 -1.2244 29 7 2.1456 -1.1501 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.9826 2.1489 0.0009 34 1 5.2661 0.0163 0.0016 35 1 2.5256 -3.6238 -0.0146 36 1 4.8284 -4.9929 -0.9084 37 1 4.8270 -5.0003 0.8715 38 1 3.1048 -6.1806 2.1073 39 1 1.4605 -8.0134 2.0975 40 1 -1.0616 -8.1805 1.1780 41 1 -1.2908 -7.9673 -0.5743 42 1 -1.7640 -9.4957 0.2062 43 1 1.2059 -9.9140 1.7874 44 1 1.5289 -12.6602 3.6531 45 1 1.4653 -7.9951 -2.1673 46 1 3.1026 -6.1560 -2.1576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272708612.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:31 Heat of formation + Delta-G solvation = 46.882751 kcal Electronic energy + Delta-G solvation = -27502.602331 eV Core-core repulsion = 23585.441637 eV Total energy + Delta-G solvation = -3917.160694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69499 -39.91378 -39.12418 -36.07345 -34.79486 -34.21985 -33.68837 -32.34363 -30.74696 -30.36421 -28.95987 -28.40491 -26.83348 -25.24289 -23.93419 -23.39085 -22.59319 -21.68022 -21.14040 -19.76158 -18.75734 -18.03341 -17.44284 -16.26363 -16.11512 -16.05222 -15.71168 -15.47577 -15.29437 -14.83160 -14.71925 -14.32314 -14.00054 -13.85273 -13.42999 -13.41451 -13.18647 -13.04586 -13.00544 -12.82233 -12.56545 -12.32633 -11.95531 -11.57066 -11.45009 -11.30274 -11.26545 -10.93627 -10.86844 -10.79338 -10.63583 -10.31070 -10.01561 -10.00517 -9.79968 -9.70018 -9.37572 -8.99737 -8.66034 -8.35483 -7.01757 -5.80417 -3.09298 0.03789 0.42219 1.42050 1.66904 2.36458 2.73055 3.33473 3.34980 3.41571 3.46679 3.48296 3.54477 3.99774 4.20101 4.37669 4.51203 4.56460 4.65424 4.92357 4.94492 4.97000 5.12544 5.19082 5.27392 5.30153 5.36725 5.45673 5.53133 5.54056 5.69923 5.76011 5.84108 5.93824 6.00067 6.03902 6.22795 6.28856 6.32962 6.34493 6.48240 6.59913 6.69270 6.74618 6.93263 7.13671 7.14148 7.25688 7.49875 7.66800 7.76615 8.37857 9.49226 10.04677 10.39799 11.42182 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.001917 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.062178 B =14599.016403 C =15264.757511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.319 3.681 3 N -0.507 5.507 4 C 0.154 3.846 5 C -0.179 4.179 6 C 0.137 3.863 7 C 0.567 3.433 8 O -0.527 6.527 9 N -0.697 5.697 10 C 0.164 3.836 11 C -0.133 4.133 12 C -0.097 4.097 13 C -0.106 4.106 14 C -0.051 4.051 15 C 0.203 3.797 16 H 0.056 0.944 17 C -0.159 4.159 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.121 4.121 28 C -0.100 4.100 29 N -0.495 5.495 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.048 0.952 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.121 0.879 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 26.725 -7.542 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 N -0.222 5.222 4 C -0.013 4.013 5 C -0.202 4.202 6 C -0.011 4.011 7 C 0.350 3.650 8 O -0.402 6.402 9 N -0.348 5.348 10 C 0.042 3.958 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.124 4.124 14 C -0.052 4.052 15 C 0.094 3.906 16 H 0.074 0.926 17 C -0.220 4.220 18 N -0.364 5.364 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.140 4.140 28 C -0.119 4.119 29 N -0.212 5.212 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.251 0.749 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.139 0.861 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.195 26.438 -7.570 27.588 hybrid contribution 0.465 -0.949 0.276 1.092 sum 2.660 25.489 -7.293 26.645 Atomic orbital electron populations 1.20636 0.84988 1.04670 1.04296 1.23312 0.98427 0.82855 0.90279 1.68239 1.10487 1.30431 1.13017 1.23392 0.89414 0.98722 0.89811 1.22976 1.03958 0.92960 1.00272 1.21664 0.89913 0.94776 0.94715 1.17808 0.86557 0.82979 0.77631 1.90812 1.12618 1.86902 1.49864 1.46030 1.11589 1.04855 1.72363 1.20274 0.92955 0.79334 1.03214 1.19582 1.00764 0.99014 0.93956 1.21016 0.96900 0.96562 0.97050 1.21086 0.96896 0.95719 0.98698 1.20542 0.96198 0.95710 0.92797 1.19254 0.90105 0.87302 0.93973 0.92609 1.22419 0.99160 1.00178 1.00196 1.42526 1.66029 1.05972 1.21838 1.19240 1.28400 0.85447 1.03994 0.91061 1.24749 1.00897 0.98249 0.97005 1.69657 1.43767 1.34191 1.10392 0.86181 0.78143 0.85068 0.76737 1.21713 1.21772 1.20733 1.21013 0.98013 0.97120 0.97855 1.20918 0.97292 0.96785 0.96883 1.68209 1.08655 1.31271 1.13072 0.89248 0.89131 0.89318 0.80492 0.82096 0.74896 0.90373 0.90273 0.86304 0.85336 0.93313 0.94310 0.92381 0.77988 0.93454 0.86084 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.31 36.00 0.37 -0.14 16 2 C 0.32 2.83 7.64 -157.30 -1.20 1.63 16 3 N -0.51 -4.39 10.32 -10.73 -0.11 -4.50 16 4 C 0.15 1.04 11.31 -17.19 -0.19 0.85 16 5 C -0.18 -1.43 9.72 -38.90 -0.38 -1.81 16 6 C 0.14 1.40 6.79 -82.64 -0.56 0.83 16 7 C 0.57 6.54 7.83 -12.05 -0.09 6.44 16 8 O -0.53 -7.30 16.43 5.38 0.09 -7.21 16 9 N -0.70 -7.40 5.54 -62.23 -0.34 -7.75 16 10 C 0.16 1.81 5.80 -5.19 -0.03 1.78 16 11 C -0.13 -1.65 5.25 -104.63 -0.55 -2.20 16 12 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 13 C -0.11 -1.74 9.06 -39.58 -0.36 -2.10 16 14 C -0.05 -0.87 4.95 -104.62 -0.52 -1.39 16 15 C 0.20 3.97 3.09 -69.08 -0.21 3.75 16 16 H 0.06 1.10 7.94 -51.93 -0.41 0.68 16 17 C -0.16 -2.81 9.47 37.16 0.35 -2.46 16 18 N -0.72 -17.68 5.07 -54.55 -0.28 -17.95 16 19 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.12 -1.75 9.67 -39.58 -0.38 -2.13 16 28 C -0.10 -1.26 9.70 -39.58 -0.38 -1.64 16 29 N -0.49 -4.92 9.60 -7.32 -0.07 -4.99 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.16 1.08 7.74 -52.49 -0.41 0.67 16 35 H 0.41 4.17 7.85 -40.82 -0.32 3.85 16 36 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.13 2.28 6.92 -52.49 -0.36 1.92 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.38 9.94 6.07 -40.82 -0.25 9.69 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 396.49 15.07 5.97 5.97 Total: -1.00 -32.69 396.49 -10.17 -42.87 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.36 Total: 10.92 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -4.77 Total: -7.44 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.08 Total: -62.25 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.69 -10.17 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272708612.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.748 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds