Wall clock time and date at job start Tue Mar 31 2020 23:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31911 * 119.04244 * 2 1 4 4 C 1.32177 * 121.03429 * 179.97438 * 3 2 1 5 5 C 1.38804 * 119.14785 * 359.97438 * 4 3 2 6 6 C 1.39494 * 118.26052 * 0.25357 * 5 4 3 7 7 C 1.48459 * 120.54698 * 179.72252 * 6 5 4 8 8 O 1.21479 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99638 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99766 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47209 * 180.02562 * 10 9 7 12 12 C 1.38234 * 119.99625 * 269.71986 * 11 10 9 13 13 C 1.38234 * 119.99787 * 179.74154 * 12 11 10 14 14 C 1.38233 * 120.00020 * 0.55963 * 13 12 11 15 15 C 1.50703 * 120.00350 * 179.72296 * 14 13 12 16 16 H 1.08997 * 109.47154 * 199.97426 * 15 14 13 17 17 C 1.52997 * 109.46965 * 79.97374 * 15 14 13 18 18 N 1.46497 * 109.46658 * 319.97372 * 15 14 13 19 19 C 1.36943 * 119.99781 * 204.99648 * 18 15 14 20 20 H 1.08000 * 119.99971 * 0.02562 * 19 18 15 21 21 C 1.38811 * 119.99824 * 180.02562 * 19 18 15 22 22 N 1.31622 * 120.00047 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00057 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47181 * 89.99667 * 23 21 19 25 25 H 1.48497 * 109.47018 * 210.00048 * 23 21 19 26 26 H 1.48498 * 109.46689 * 329.99952 * 23 21 19 27 27 C 1.38233 * 119.99989 * 359.69474 * 14 13 12 28 28 C 1.38228 * 119.99980 * 89.99763 * 11 10 9 29 29 N 1.31554 * 119.04174 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47058 * 89.99856 * 1 2 3 31 31 H 1.08998 * 109.46823 * 210.00046 * 1 2 3 32 32 H 1.08999 * 109.46824 * 329.99788 * 1 2 3 33 33 H 1.08003 * 120.42615 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.86546 * 179.97438 * 5 4 3 35 35 H 0.96997 * 120.00614 * 0.02562 * 9 7 6 36 36 H 1.09007 * 109.46514 * 300.00102 * 10 9 7 37 37 H 1.08995 * 109.47352 * 59.99482 * 10 9 7 38 38 H 1.08004 * 120.00277 * 0.02562 * 12 11 10 39 39 H 1.07999 * 119.99964 * 180.27905 * 13 12 11 40 40 H 1.08997 * 109.47227 * 300.00007 * 17 15 14 41 41 H 1.09002 * 109.47309 * 60.00406 * 17 15 14 42 42 H 1.09001 * 109.47106 * 180.02562 * 17 15 14 43 43 H 0.97004 * 120.00584 * 25.00412 * 18 15 14 44 44 H 0.96998 * 120.00043 * 180.02562 * 22 21 19 45 45 H 1.07998 * 120.00667 * 180.02562 * 27 14 13 46 46 H 1.07999 * 120.00327 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1532 0.0000 4 6 3.4683 1.1992 0.0005 5 6 4.1861 0.0111 0.0016 6 6 3.4761 -1.1895 -0.0033 7 6 4.1925 -2.4898 -0.0086 8 8 5.4070 -2.5140 -0.0082 9 7 3.4953 -3.6432 -0.0139 10 6 4.2023 -4.9264 -0.0186 11 6 3.2003 -6.0520 -0.0246 12 6 2.7437 -6.5772 1.1698 13 6 1.8206 -7.6061 1.1644 14 6 1.3627 -8.1176 -0.0355 15 6 0.3610 -9.2435 -0.0415 16 1 0.3831 -9.7442 -1.0094 17 6 -1.0395 -8.6813 0.2101 18 7 0.6987 -10.2031 1.0126 19 6 0.2983 -11.5082 0.9044 20 1 -0.2661 -11.8300 0.0417 21 6 0.6179 -12.4173 1.9035 22 7 1.3053 -12.0249 2.9551 23 14 0.0724 -14.1977 1.7555 24 1 1.1207 -14.9799 1.0523 25 1 -0.1419 -14.7641 3.1114 26 1 -1.1954 -14.2645 0.9851 27 6 1.8233 -7.5959 -1.2299 28 6 2.7422 -6.5630 -1.2244 29 7 2.1456 -1.1501 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 3.9826 2.1489 0.0009 34 1 5.2661 0.0163 0.0016 35 1 2.5256 -3.6238 -0.0146 36 1 4.8284 -4.9929 -0.9084 37 1 4.8270 -5.0003 0.8715 38 1 3.1048 -6.1806 2.1073 39 1 1.4605 -8.0134 2.0975 40 1 -1.0616 -8.1805 1.1780 41 1 -1.2908 -7.9673 -0.5743 42 1 -1.7640 -9.4957 0.2062 43 1 1.2059 -9.9140 1.7874 44 1 1.5289 -12.6602 3.6531 45 1 1.4653 -7.9951 -2.1673 46 1 3.1026 -6.1560 -2.1576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272708612.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:30 Heat of formation + Delta-G solvation = 26.399366 kcal Electronic energy + Delta-G solvation = -27503.490557 eV Core-core repulsion = 23585.441637 eV Total energy + Delta-G solvation = -3918.048920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34606 -40.88948 -40.19972 -37.47602 -35.94232 -34.99169 -34.26910 -34.07646 -31.95995 -31.68438 -30.06962 -29.48236 -27.80769 -26.24704 -25.66203 -24.11659 -23.74386 -22.93108 -21.96616 -21.11444 -19.56060 -19.37403 -18.67353 -17.35619 -17.01170 -16.92337 -16.72027 -16.49200 -16.24791 -16.04410 -15.72161 -15.66406 -15.08810 -15.02298 -14.72937 -14.45898 -14.37512 -14.27537 -13.84875 -13.70026 -13.46202 -13.41618 -13.24134 -12.99150 -12.79341 -12.71971 -12.48262 -12.15101 -12.05837 -12.03017 -11.97162 -11.72172 -11.60459 -11.52196 -11.00538 -10.61594 -10.46871 -10.25884 -9.79490 -9.56461 -9.02393 -7.94114 -5.22494 -0.65184 -0.15123 0.28539 0.52931 1.47262 1.48726 1.56280 1.56983 1.89021 2.55861 2.67618 2.68347 2.91026 3.02635 3.40295 3.51223 3.63412 3.72224 3.86569 3.97807 3.98695 4.03890 4.14978 4.33641 4.38704 4.46052 4.53629 4.59114 4.64295 4.72444 4.77632 4.78725 4.82980 5.00763 5.01396 5.06181 5.11755 5.16268 5.22013 5.32898 5.42024 5.50656 5.55433 5.61564 5.71601 5.83677 6.09021 6.28203 6.29464 6.83567 6.94403 7.34255 8.09221 8.32987 9.29449 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.001917 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.062178 B =14599.016403 C =15264.757511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.306 3.694 3 N -0.519 5.519 4 C 0.162 3.838 5 C -0.178 4.178 6 C 0.116 3.884 7 C 0.568 3.432 8 O -0.554 6.554 9 N -0.692 5.692 10 C 0.169 3.831 11 C -0.118 4.118 12 C -0.098 4.098 13 C -0.124 4.124 14 C -0.072 4.072 15 C 0.198 3.802 16 H 0.055 0.945 17 C -0.148 4.148 18 N -0.735 5.735 19 C -0.237 4.237 20 H 0.078 0.922 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.289 1.289 25 H -0.297 1.297 26 H -0.268 1.268 27 C -0.121 4.121 28 C -0.092 4.092 29 N -0.509 5.509 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.217 0.783 34 H 0.172 0.828 35 H 0.418 0.582 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.139 0.861 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 28.727 -9.384 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 N -0.234 5.234 4 C -0.006 4.006 5 C -0.200 4.200 6 C -0.031 4.031 7 C 0.353 3.647 8 O -0.432 6.432 9 N -0.342 5.342 10 C 0.047 3.953 11 C -0.119 4.119 12 C -0.116 4.116 13 C -0.142 4.142 14 C -0.073 4.073 15 C 0.091 3.909 16 H 0.073 0.927 17 C -0.208 4.208 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.096 0.904 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.216 1.216 25 H -0.224 1.224 26 H -0.193 1.193 27 C -0.140 4.140 28 C -0.110 4.110 29 N -0.226 5.226 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.234 0.766 34 H 0.190 0.810 35 H 0.255 0.745 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.149 0.851 39 H 0.122 0.878 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.157 0.843 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.184 28.459 -9.459 30.069 hybrid contribution 0.477 -1.390 0.783 1.666 sum 2.661 27.069 -8.676 28.549 Atomic orbital electron populations 1.20725 0.83333 1.05211 1.05126 1.23839 0.99593 0.82728 0.89983 1.68335 1.11401 1.30279 1.13364 1.24045 0.88880 0.99811 0.87814 1.23188 1.04583 0.92680 0.99589 1.21594 0.90387 0.94714 0.96440 1.18008 0.86273 0.83560 0.76883 1.90791 1.13715 1.87364 1.51310 1.45947 1.11700 1.04591 1.71980 1.20218 0.92471 0.78944 1.03686 1.19709 1.00015 0.98723 0.93428 1.21129 0.96226 0.95834 0.98424 1.20964 0.98408 0.97089 0.97750 1.20337 0.96933 0.96001 0.94046 1.19427 0.91826 0.87453 0.92236 0.92702 1.22251 0.97445 1.00154 1.00961 1.42735 1.65931 1.06104 1.22861 1.19640 1.27014 0.86676 1.03582 0.90435 1.25551 1.02029 1.02281 0.97134 1.69819 1.45842 1.35152 1.11294 0.85153 0.78102 0.80295 0.76304 1.21594 1.22408 1.19300 1.21196 0.97999 0.97321 0.97438 1.21223 0.96032 0.95667 0.98069 1.68189 1.08614 1.31960 1.13881 0.88172 0.89000 0.88332 0.76650 0.81000 0.74490 0.89465 0.90371 0.85092 0.87809 0.94087 0.91080 0.93882 0.79252 0.94130 0.84337 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.31 71.24 0.73 -0.15 16 2 C 0.31 5.01 7.64 138.79 1.06 6.07 16 3 N -0.52 -7.97 10.32 -187.87 -1.94 -9.91 16 4 C 0.16 1.80 11.31 84.78 0.96 2.76 16 5 C -0.18 -2.54 9.72 22.71 0.22 -2.32 16 6 C 0.12 2.22 6.79 41.98 0.29 2.50 16 7 C 0.57 12.51 7.83 86.97 0.68 13.19 16 8 O -0.55 -14.84 16.43 -3.65 -0.06 -14.90 16 9 N -0.69 -13.67 5.54 -469.10 -2.60 -16.27 16 10 C 0.17 3.41 5.80 85.63 0.50 3.91 16 11 C -0.12 -2.72 5.25 -19.87 -0.10 -2.83 16 12 C -0.10 -2.66 9.70 22.27 0.22 -2.44 16 13 C -0.12 -4.15 9.06 22.27 0.20 -3.95 16 14 C -0.07 -2.42 4.95 -19.87 -0.10 -2.52 16 15 C 0.20 7.77 3.09 44.25 0.14 7.91 16 16 H 0.05 2.14 7.94 -2.39 -0.02 2.12 16 17 C -0.15 -5.19 9.47 71.98 0.68 -4.51 16 18 N -0.73 -36.95 5.07 -326.51 -1.66 -38.61 16 19 C -0.24 -13.10 9.93 84.03 0.83 -12.27 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 22 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 23 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 27 C -0.12 -3.25 9.67 22.27 0.22 -3.03 16 28 C -0.09 -2.06 9.70 22.27 0.22 -1.84 16 29 N -0.51 -9.55 9.60 -177.08 -1.70 -11.25 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.22 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.17 2.00 7.74 -2.91 -0.02 1.98 16 35 H 0.42 7.81 7.85 -92.71 -0.73 7.08 16 36 H 0.09 1.66 8.09 -2.38 -0.02 1.64 16 37 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 38 H 0.13 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.10 3.95 6.92 -2.91 -0.02 3.93 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.37 20.20 6.07 -92.70 -0.56 19.64 16 44 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.14 3.18 8.04 -2.91 -0.02 3.16 16 46 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -71.66 396.49 1.29 -70.37 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.27 Total: 35.20 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 7.20 Total: -3.53 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -7.61 Total: -135.39 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.06 Total: -14.90 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -71.66 1.29 -70.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272708612.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.768 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds