Wall clock time and date at job start Tue Mar 31 2020 23:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35315 * 126.12691 * 2 1 4 4 C 1.39864 * 107.91932 * 180.14195 * 3 2 1 5 5 C 1.50703 * 125.89826 * 179.86839 * 4 3 2 6 6 N 1.46891 * 109.47690 * 94.71255 * 5 4 3 7 7 C 1.46901 * 111.00344 * 293.95987 * 6 5 4 8 8 C 1.46903 * 111.00200 * 169.99799 * 6 5 4 9 9 H 1.09007 * 109.46712 * 174.58160 * 8 6 5 10 10 C 1.52998 * 109.46846 * 54.58388 * 8 6 5 11 11 C 1.52994 * 109.47390 * 294.58329 * 8 6 5 12 12 N 1.46508 * 109.47164 * 305.18052 * 11 8 6 13 13 C 1.34772 * 119.99775 * 174.94968 * 12 11 8 14 14 O 1.21276 * 120.00336 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99677 * 179.97438 * 13 12 11 16 16 S 1.80996 * 109.47008 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00163 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99741 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99867 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46892 * 90.00014 * 21 19 17 23 23 H 1.48497 * 109.47114 * 210.00331 * 21 19 17 24 24 H 1.48504 * 109.46877 * 330.00293 * 21 19 17 25 25 N 1.30833 * 108.20382 * 359.59932 * 4 3 2 26 26 N 1.34951 * 126.12692 * 179.69990 * 2 1 3 27 27 C 1.46500 * 126.03792 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47439 * 270.29197 * 1 2 3 29 29 H 1.08993 * 109.46994 * 30.29567 * 1 2 3 30 30 H 1.09006 * 109.46551 * 150.29069 * 1 2 3 31 31 H 1.08003 * 126.04076 * 0.02747 * 3 2 1 32 32 H 1.09008 * 109.46689 * 334.71217 * 5 4 3 33 33 H 1.09003 * 109.47375 * 214.71924 * 5 4 3 34 34 H 1.09007 * 109.46552 * 302.14579 * 7 6 5 35 35 H 1.08999 * 109.47248 * 62.14178 * 7 6 5 36 36 H 1.08996 * 109.47467 * 182.15008 * 7 6 5 37 37 H 1.08997 * 109.47046 * 299.99861 * 10 8 6 38 38 H 1.09003 * 109.46805 * 59.99870 * 10 8 6 39 39 H 1.09003 * 109.47005 * 179.97438 * 10 8 6 40 40 H 1.09004 * 109.47355 * 65.17609 * 11 8 6 41 41 H 1.08998 * 109.47500 * 185.18015 * 11 8 6 42 42 H 0.97001 * 119.99679 * 354.94894 * 12 11 8 43 43 H 1.08999 * 109.46852 * 299.99809 * 15 13 12 44 44 H 1.08998 * 109.46748 * 60.00067 * 15 13 12 45 45 H 0.97007 * 119.99637 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46480 * 270.01710 * 27 26 2 47 47 H 1.09002 * 109.47407 * 30.01409 * 27 26 2 48 48 H 1.08998 * 109.47213 * 150.02225 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0033 5 6 4.8543 1.5395 -0.0073 6 7 5.3215 1.7355 1.3715 7 6 4.3411 2.4975 2.1564 8 6 6.6367 2.3896 1.3938 9 1 6.9156 2.6095 2.4244 10 6 6.5720 3.6922 0.5938 11 6 7.6795 1.4596 0.7705 12 7 7.6546 0.1667 1.4592 13 6 8.4203 -0.8489 1.0137 14 8 9.1296 -0.6928 0.0424 15 6 8.3951 -2.1786 1.7225 16 16 9.5205 -3.3268 0.8911 17 6 9.2992 -4.7555 1.8983 18 1 8.6198 -4.7247 2.7374 19 6 9.9979 -5.9205 1.6136 20 7 9.8321 -6.9879 2.3658 21 14 11.1724 -5.9740 0.1620 22 1 12.5285 -5.5643 0.6072 23 1 11.2257 -7.3552 -0.3809 24 1 10.6965 -5.0450 -0.8943 25 7 3.6334 -0.6524 0.0035 26 7 2.3027 -1.0900 0.0057 27 6 1.8540 -2.4846 0.0125 28 1 -0.3634 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8927 -0.5094 31 1 1.9741 2.1211 0.0004 32 1 4.6025 2.5050 -0.4463 33 1 5.6423 1.0678 -0.5944 34 1 4.1596 3.4591 1.6760 35 1 3.4074 1.9380 2.2135 36 1 4.7287 2.6612 3.1619 37 1 6.2930 3.4722 -0.4366 38 1 5.8290 4.3547 1.0379 39 1 7.5477 4.1778 0.6107 40 1 7.4511 1.3132 -0.2852 41 1 8.6693 1.9051 0.8698 42 1 7.0870 0.0418 2.2358 43 1 8.7110 -2.0449 2.7571 44 1 7.3831 -2.5827 1.7008 45 1 10.3201 -7.8022 2.1666 46 1 1.7420 -2.8252 1.0419 47 1 0.8958 -2.5605 -0.5015 48 1 2.5902 -3.1056 -0.4976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275773381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:49 Heat of formation + Delta-G solvation = 45.943294 kcal Electronic energy + Delta-G solvation = -27401.806480 eV Core-core repulsion = 23620.049000 eV Total energy + Delta-G solvation = -3781.757480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.44593 -39.49905 -38.26290 -34.50534 -33.55549 -32.35980 -32.19966 -31.32976 -29.35127 -28.70149 -27.27751 -26.42896 -25.75163 -25.44439 -24.07932 -20.90162 -20.29613 -20.10965 -19.14687 -17.73625 -16.83057 -16.44948 -16.19561 -16.11718 -15.75308 -15.03484 -14.93866 -14.75281 -14.69655 -14.27654 -13.87009 -13.77776 -13.52635 -13.47209 -13.10941 -12.95177 -12.86566 -12.72183 -12.68291 -12.59597 -12.39459 -12.34514 -12.21627 -11.87338 -11.61182 -11.40906 -11.18242 -11.02607 -10.94056 -10.52174 -10.48862 -9.78070 -9.33351 -9.26218 -8.92910 -8.70964 -8.65004 -8.50424 -8.38519 -6.80573 -6.21490 -3.91253 1.73246 2.36318 2.54705 2.91557 3.20642 3.38515 3.45148 3.57457 3.73729 3.91576 4.29059 4.36210 4.40637 4.54912 4.66577 4.74530 4.81591 4.89169 4.96303 4.97995 5.02599 5.09164 5.12645 5.17689 5.22982 5.27077 5.34936 5.40335 5.43747 5.47247 5.48730 5.57822 5.62507 5.68626 5.76579 5.81321 5.92408 5.96584 6.02154 6.20333 6.49216 6.70867 6.77918 6.87625 6.88511 7.68410 7.91688 8.02095 8.50006 8.73636 9.25242 10.87933 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.002981 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.985392 B = 9392.073369 C =11455.822302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.076 3.924 3 C -0.272 4.272 4 C 0.081 3.919 5 C 0.132 3.868 6 N -0.526 5.526 7 C 0.024 3.976 8 C 0.069 3.931 9 H 0.093 0.907 10 C -0.185 4.185 11 C 0.130 3.870 12 N -0.721 5.721 13 C 0.532 3.468 14 O -0.529 6.529 15 C -0.120 4.120 16 S -0.144 6.144 17 C -0.518 4.518 18 H 0.087 0.913 19 C 0.094 3.906 20 N -0.883 5.883 21 Si 0.857 3.143 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.235 1.235 25 N -0.264 5.264 26 N -0.372 5.372 27 C 0.099 3.901 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.028 0.972 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.405 0.595 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.712 21.996 -2.382 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.051 4.051 3 C -0.301 4.301 4 C -0.086 4.086 5 C 0.003 3.997 6 N -0.250 5.250 7 C -0.124 4.124 8 C -0.040 4.040 9 H 0.111 0.889 10 C -0.244 4.244 11 C 0.005 3.995 12 N -0.375 5.375 13 C 0.317 3.683 14 O -0.405 6.405 15 C -0.271 4.271 16 S 0.082 5.918 17 C -0.665 4.665 18 H 0.105 0.895 19 C -0.114 4.114 20 N -0.520 5.520 21 Si 0.682 3.318 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.159 1.159 25 N -0.086 5.086 26 N -0.155 5.155 27 C -0.043 4.043 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.240 0.760 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.778 20.379 -3.741 27.963 hybrid contribution -1.292 0.869 0.714 1.713 sum -20.070 21.248 -3.027 29.384 Atomic orbital electron populations 1.20428 0.87590 1.03644 1.03213 1.21052 0.94532 0.87485 1.02018 1.21042 0.91784 0.98640 1.18670 1.21965 0.94770 0.91649 1.00204 1.20424 0.93064 0.95895 0.90352 1.62049 1.02242 1.48706 1.12011 1.22427 0.96433 0.95970 0.97606 1.22031 0.89097 0.92130 1.00737 0.88930 1.22403 1.03027 0.97897 1.01107 1.21315 0.97691 0.83556 0.96930 1.45715 1.46398 1.11398 1.33942 1.20194 0.78968 0.85011 0.84093 1.90676 1.40358 1.82792 1.26636 1.23242 1.05316 0.95383 1.03165 1.84723 1.56286 1.08158 1.42609 1.22346 1.31375 0.96285 1.16518 0.89473 1.24712 0.95963 0.94319 0.96384 1.69949 1.41572 1.02135 1.38364 0.86731 0.82165 0.78861 0.84086 1.19258 1.20062 1.15878 1.77549 0.95603 1.12356 1.23082 1.48538 1.03961 1.06029 1.56931 1.21870 1.00920 0.77925 1.03573 0.90296 0.89828 0.91229 0.84124 0.92521 0.88923 0.95332 0.91002 0.91495 0.91841 0.91946 0.91393 0.91541 0.91389 0.76000 0.88801 0.88520 0.92061 0.90578 0.89762 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.12 36.01 0.36 -0.12 16 2 C 0.08 0.73 6.93 -82.26 -0.57 0.16 16 3 C -0.27 -2.75 9.71 -40.02 -0.39 -3.14 16 4 C 0.08 0.99 5.93 -82.41 -0.49 0.51 16 5 C 0.13 1.38 4.49 -4.98 -0.02 1.36 16 6 N -0.53 -5.02 4.21 -236.33 -1.00 -6.02 16 7 C 0.02 0.19 8.94 60.07 0.54 0.72 16 8 C 0.07 0.59 2.46 -67.71 -0.17 0.42 16 9 H 0.09 0.72 8.00 -51.92 -0.42 0.31 16 10 C -0.19 -1.26 8.46 37.16 0.31 -0.94 16 11 C 0.13 1.54 4.85 -4.04 -0.02 1.52 16 12 N -0.72 -10.40 5.35 -60.29 -0.32 -10.72 16 13 C 0.53 10.29 7.85 -10.99 -0.09 10.21 16 14 O -0.53 -12.13 15.86 5.56 0.09 -12.04 16 15 C -0.12 -2.54 6.16 36.01 0.22 -2.32 16 16 S -0.14 -3.84 18.55 -107.50 -1.99 -5.84 16 17 C -0.52 -15.47 10.04 30.94 0.31 -15.16 16 18 H 0.09 2.72 8.03 -52.48 -0.42 2.30 16 19 C 0.09 2.84 5.50 -17.43 -0.10 2.75 16 20 N -0.88 -27.33 13.97 55.49 0.78 -26.55 16 21 Si 0.86 22.46 27.74 -169.99 -4.72 17.75 16 22 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.23 -6.17 6.74 56.52 0.38 -5.79 16 25 N -0.26 -3.88 12.58 33.67 0.42 -3.46 16 26 N -0.37 -4.34 4.01 -63.88 -0.26 -4.59 16 27 C 0.10 0.82 11.27 59.85 0.67 1.49 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.30 7.08 -51.93 -0.37 -0.07 16 31 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.06 0.49 6.81 -51.92 -0.35 0.13 16 33 H 0.09 1.15 6.16 -51.93 -0.32 0.83 16 34 H 0.03 0.19 6.85 -51.92 -0.36 -0.17 16 35 H 0.07 0.64 6.66 -51.93 -0.35 0.30 16 36 H 0.07 0.47 8.02 -51.93 -0.42 0.06 16 37 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 38 H 0.06 0.37 6.80 -51.93 -0.35 0.02 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.88 6.58 -51.93 -0.34 0.54 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.41 5.24 8.23 -40.82 -0.34 4.90 16 43 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 44 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 45 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.44 7.05 -51.93 -0.37 0.07 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -37.53 400.25 -8.07 -45.60 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.69 Total: 2.38 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.58 Total: -2.53 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.38 Total: -51.34 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.72 Total: 17.75 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -1.99 Total: -5.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.53 -8.07 -45.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275773381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.543 kcal (2) G-P(sol) polarization free energy of solvation -37.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds