Wall clock time and date at job start Tue Mar 31 2020 23:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35315 * 126.12691 * 2 1 4 4 C 1.39864 * 107.91932 * 180.14195 * 3 2 1 5 5 C 1.50703 * 125.89826 * 179.86839 * 4 3 2 6 6 N 1.46891 * 109.47690 * 94.71255 * 5 4 3 7 7 C 1.46901 * 111.00344 * 293.95987 * 6 5 4 8 8 C 1.46903 * 111.00200 * 169.99799 * 6 5 4 9 9 H 1.09007 * 109.46712 * 174.58160 * 8 6 5 10 10 C 1.52998 * 109.46846 * 54.58388 * 8 6 5 11 11 C 1.52994 * 109.47390 * 294.58329 * 8 6 5 12 12 N 1.46508 * 109.47164 * 305.18052 * 11 8 6 13 13 C 1.34772 * 119.99775 * 174.94968 * 12 11 8 14 14 O 1.21276 * 120.00336 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99677 * 179.97438 * 13 12 11 16 16 S 1.80996 * 109.47008 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00163 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99741 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99867 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46892 * 90.00014 * 21 19 17 23 23 H 1.48497 * 109.47114 * 210.00331 * 21 19 17 24 24 H 1.48504 * 109.46877 * 330.00293 * 21 19 17 25 25 N 1.30833 * 108.20382 * 359.59932 * 4 3 2 26 26 N 1.34951 * 126.12692 * 179.69990 * 2 1 3 27 27 C 1.46500 * 126.03792 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47439 * 270.29197 * 1 2 3 29 29 H 1.08993 * 109.46994 * 30.29567 * 1 2 3 30 30 H 1.09006 * 109.46551 * 150.29069 * 1 2 3 31 31 H 1.08003 * 126.04076 * 0.02747 * 3 2 1 32 32 H 1.09008 * 109.46689 * 334.71217 * 5 4 3 33 33 H 1.09003 * 109.47375 * 214.71924 * 5 4 3 34 34 H 1.09007 * 109.46552 * 302.14579 * 7 6 5 35 35 H 1.08999 * 109.47248 * 62.14178 * 7 6 5 36 36 H 1.08996 * 109.47467 * 182.15008 * 7 6 5 37 37 H 1.08997 * 109.47046 * 299.99861 * 10 8 6 38 38 H 1.09003 * 109.46805 * 59.99870 * 10 8 6 39 39 H 1.09003 * 109.47005 * 179.97438 * 10 8 6 40 40 H 1.09004 * 109.47355 * 65.17609 * 11 8 6 41 41 H 1.08998 * 109.47500 * 185.18015 * 11 8 6 42 42 H 0.97001 * 119.99679 * 354.94894 * 12 11 8 43 43 H 1.08999 * 109.46852 * 299.99809 * 15 13 12 44 44 H 1.08998 * 109.46748 * 60.00067 * 15 13 12 45 45 H 0.97007 * 119.99637 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46480 * 270.01710 * 27 26 2 47 47 H 1.09002 * 109.47407 * 30.01409 * 27 26 2 48 48 H 1.08998 * 109.47213 * 150.02225 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6559 -0.0033 5 6 4.8543 1.5395 -0.0073 6 7 5.3215 1.7355 1.3715 7 6 4.3411 2.4975 2.1564 8 6 6.6367 2.3896 1.3938 9 1 6.9156 2.6095 2.4244 10 6 6.5720 3.6922 0.5938 11 6 7.6795 1.4596 0.7705 12 7 7.6546 0.1667 1.4592 13 6 8.4203 -0.8489 1.0137 14 8 9.1296 -0.6928 0.0424 15 6 8.3951 -2.1786 1.7225 16 16 9.5205 -3.3268 0.8911 17 6 9.2992 -4.7555 1.8983 18 1 8.6198 -4.7247 2.7374 19 6 9.9979 -5.9205 1.6136 20 7 9.8321 -6.9879 2.3658 21 14 11.1724 -5.9740 0.1620 22 1 12.5285 -5.5643 0.6072 23 1 11.2257 -7.3552 -0.3809 24 1 10.6965 -5.0450 -0.8943 25 7 3.6334 -0.6524 0.0035 26 7 2.3027 -1.0900 0.0057 27 6 1.8540 -2.4846 0.0125 28 1 -0.3634 0.0052 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3633 -0.8927 -0.5094 31 1 1.9741 2.1211 0.0004 32 1 4.6025 2.5050 -0.4463 33 1 5.6423 1.0678 -0.5944 34 1 4.1596 3.4591 1.6760 35 1 3.4074 1.9380 2.2135 36 1 4.7287 2.6612 3.1619 37 1 6.2930 3.4722 -0.4366 38 1 5.8290 4.3547 1.0379 39 1 7.5477 4.1778 0.6107 40 1 7.4511 1.3132 -0.2852 41 1 8.6693 1.9051 0.8698 42 1 7.0870 0.0418 2.2358 43 1 8.7110 -2.0449 2.7571 44 1 7.3831 -2.5827 1.7008 45 1 10.3201 -7.8022 2.1666 46 1 1.7420 -2.8252 1.0419 47 1 0.8958 -2.5605 -0.5015 48 1 2.5902 -3.1056 -0.4976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275773381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:48 Heat of formation + Delta-G solvation = 17.873888 kcal Electronic energy + Delta-G solvation = -27403.023661 eV Core-core repulsion = 23620.049000 eV Total energy + Delta-G solvation = -3782.974661 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.22368 -40.75230 -39.32362 -35.62105 -34.68522 -34.48229 -32.84248 -32.29231 -30.75983 -29.45298 -27.92878 -27.89029 -27.16490 -26.51506 -24.89443 -21.77678 -21.58414 -21.01103 -20.00699 -19.73887 -17.81631 -17.55112 -17.46991 -17.15413 -17.07241 -16.58321 -16.26614 -15.85704 -15.62876 -15.52349 -14.94186 -14.90785 -14.69406 -14.49978 -14.16460 -14.01811 -13.95700 -13.56057 -13.44141 -13.36028 -13.31845 -13.18912 -13.05642 -12.96289 -12.96008 -12.82618 -12.62148 -12.41374 -12.13922 -11.88020 -11.75432 -11.33842 -11.17862 -10.97162 -10.55070 -10.10274 -9.99379 -9.41915 -9.20759 -8.99966 -8.52546 -6.23063 0.96482 0.98737 1.30271 1.46372 1.55763 1.62853 1.66339 1.77748 2.24110 2.33482 2.72519 2.85372 3.07699 3.57093 3.73468 3.80206 3.92520 4.03079 4.13966 4.20353 4.22715 4.32813 4.34299 4.37050 4.43932 4.46008 4.61179 4.62671 4.68059 4.71901 4.76372 4.80022 4.80877 4.89399 4.93095 5.03977 5.07607 5.14964 5.29339 5.33762 5.50315 5.69900 5.72122 6.04901 6.09843 6.13958 6.21018 6.56389 6.87347 6.92368 7.26509 8.60253 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.002981 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.985392 B = 9392.073369 C =11455.822302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.079 3.921 3 C -0.283 4.283 4 C 0.074 3.926 5 C 0.137 3.863 6 N -0.541 5.541 7 C 0.029 3.971 8 C 0.079 3.921 9 H 0.108 0.892 10 C -0.179 4.179 11 C 0.127 3.873 12 N -0.697 5.697 13 C 0.534 3.466 14 O -0.568 6.568 15 C -0.108 4.108 16 S -0.172 6.172 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.046 3.954 20 N -0.918 5.918 21 Si 0.916 3.084 22 H -0.260 1.260 23 H -0.257 1.257 24 H -0.239 1.239 25 N -0.330 5.330 26 N -0.384 5.384 27 C 0.092 3.908 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.163 0.837 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.415 0.585 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.277 0.723 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.207 24.356 -2.459 33.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.312 4.312 4 C -0.092 4.092 5 C 0.008 3.992 6 N -0.265 5.265 7 C -0.119 4.119 8 C -0.029 4.029 9 H 0.126 0.874 10 C -0.238 4.238 11 C 0.003 3.997 12 N -0.349 5.349 13 C 0.319 3.681 14 O -0.448 6.448 15 C -0.259 4.259 16 S 0.055 5.945 17 C -0.677 4.677 18 H 0.077 0.923 19 C -0.160 4.160 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.184 1.184 23 H -0.181 1.181 24 H -0.163 1.163 25 N -0.153 5.153 26 N -0.167 5.167 27 C -0.048 4.048 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.180 0.820 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.251 0.749 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.136 0.864 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.310 22.765 -3.782 30.741 hybrid contribution -0.981 0.214 0.822 1.297 sum -21.291 22.979 -2.960 31.466 Atomic orbital electron populations 1.20578 0.84409 1.05128 1.04416 1.21782 0.96417 0.86704 0.99982 1.21340 0.90945 0.99935 1.19006 1.22313 0.96182 0.91279 0.99437 1.20358 0.91810 0.96236 0.90781 1.61990 1.03009 1.49885 1.11656 1.22398 0.95361 0.96202 0.97929 1.21974 0.87588 0.91826 1.01554 0.87364 1.22350 1.04030 0.96865 1.00560 1.21546 0.99343 0.82541 0.96286 1.45552 1.44478 1.11273 1.33599 1.19856 0.79437 0.85201 0.83557 1.90661 1.42455 1.83357 1.28308 1.23217 1.03873 0.95200 1.03588 1.84611 1.58371 1.08284 1.43248 1.22461 1.30917 0.98058 1.16260 0.92305 1.25575 0.97485 0.93943 0.98956 1.70022 1.42683 1.02889 1.39972 0.85851 0.80100 0.79612 0.80709 1.18441 1.18092 1.16279 1.77444 0.97993 1.13929 1.25916 1.48786 1.03445 1.07377 1.57097 1.22076 1.01909 0.76659 1.04194 0.89054 0.88177 0.89919 0.81980 0.90535 0.91589 0.93582 0.92281 0.90479 0.92310 0.90319 0.90633 0.92956 0.90915 0.74854 0.87154 0.88118 0.91314 0.90088 0.86397 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.12 71.24 0.72 0.03 16 2 C 0.08 1.40 6.93 41.41 0.29 1.69 16 3 C -0.28 -5.36 9.71 21.99 0.21 -5.15 16 4 C 0.07 1.81 5.93 43.10 0.26 2.06 16 5 C 0.14 2.80 4.49 85.56 0.38 3.19 16 6 N -0.54 -9.52 4.21 -901.60 -3.80 -13.32 16 7 C 0.03 0.38 8.94 127.69 1.14 1.52 16 8 C 0.08 1.19 2.46 44.91 0.11 1.30 16 9 H 0.11 1.35 8.00 -2.38 -0.02 1.33 16 10 C -0.18 -1.95 8.46 71.98 0.61 -1.34 16 11 C 0.13 2.90 4.85 86.38 0.42 3.32 16 12 N -0.70 -19.69 5.35 -463.06 -2.48 -22.17 16 13 C 0.53 20.73 7.85 87.66 0.69 21.41 16 14 O -0.57 -26.35 15.86 -3.02 -0.05 -26.40 16 15 C -0.11 -4.58 6.16 71.24 0.44 -4.14 16 16 S -0.17 -9.26 18.55 -56.49 -1.05 -10.31 16 17 C -0.53 -32.36 10.04 67.95 0.68 -31.68 16 18 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 19 C 0.05 2.78 5.50 84.86 0.47 3.24 16 20 N -0.92 -57.49 13.97 21.65 0.30 -57.19 16 21 Si 0.92 46.61 27.74 68.60 1.90 48.51 16 22 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.24 -12.24 6.74 99.48 0.67 -11.57 16 25 N -0.33 -9.97 12.58 -47.39 -0.60 -10.57 16 26 N -0.38 -8.90 4.01 -356.02 -1.43 -10.33 16 27 C 0.09 1.51 11.27 127.77 1.44 2.95 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.46 7.08 -2.38 -0.02 0.44 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.08 1.20 6.81 -2.38 -0.02 1.18 16 33 H 0.07 1.69 6.16 -2.39 -0.01 1.67 16 34 H 0.05 0.45 6.85 -2.38 -0.02 0.44 16 35 H 0.06 0.96 6.66 -2.39 -0.02 0.94 16 36 H 0.08 0.87 8.02 -2.39 -0.02 0.85 16 37 H 0.06 0.71 6.56 -2.39 -0.02 0.70 16 38 H 0.08 0.64 6.80 -2.39 -0.02 0.63 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 1.39 6.58 -2.39 -0.02 1.37 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.41 10.28 8.23 -92.71 -0.76 9.52 16 43 H 0.11 4.31 8.14 -2.40 -0.02 4.29 16 44 H 0.10 4.20 8.14 -2.40 -0.02 4.18 16 45 H 0.28 16.00 8.31 -92.70 -0.77 15.23 16 46 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.12 1.04 7.05 -2.39 -0.02 1.02 16 48 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -83.62 400.25 0.83 -82.79 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.17 Total: 20.58 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 7.86 Total: -1.60 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -8.00 Total: -113.57 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 1.90 Total: 48.51 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.05 Total: -10.31 kcal Total: -83.62 0.83 -82.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275773381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.665 kcal (2) G-P(sol) polarization free energy of solvation -83.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds