Wall clock time and date at job start Tue Mar 31 2020 23:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38803 * 120.42820 * 2 1 4 4 C 1.39495 * 118.26185 * 179.72829 * 3 2 1 5 5 C 1.48456 * 120.54455 * 179.97438 * 4 3 2 6 6 O 1.21471 * 120.00645 * 353.21138 * 5 4 3 7 7 N 1.34787 * 119.99777 * 173.20993 * 5 4 3 8 8 C 1.46494 * 119.99620 * 3.37675 * 7 5 4 9 9 C 1.53003 * 109.47423 * 82.97010 * 8 7 5 10 10 N 1.46495 * 109.47489 * 179.97438 * 9 8 7 11 11 C 1.36936 * 119.99971 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00407 * 0.02562 * 11 10 9 13 13 C 1.38816 * 120.00229 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99668 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00226 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47539 * 0.02562 * 15 13 11 17 17 H 1.48510 * 109.46993 * 120.00306 * 15 13 11 18 18 H 1.48503 * 109.47421 * 239.99966 * 15 13 11 19 19 C 1.46500 * 119.99781 * 183.37497 * 7 5 4 20 20 C 1.50698 * 109.46653 * 85.74734 * 19 7 5 21 21 C 1.38234 * 119.99892 * 274.24588 * 20 19 7 22 22 C 1.38240 * 120.00156 * 179.77344 * 21 20 19 23 23 C 1.38240 * 119.99508 * 0.50448 * 22 21 20 24 24 C 1.38230 * 119.99906 * 359.75200 * 23 22 21 25 25 C 1.38232 * 120.00443 * 359.97438 * 24 23 22 26 26 N 1.33102 * 118.90372 * 359.97438 * 4 3 2 27 27 C 1.31550 * 120.73820 * 0.02562 * 26 4 3 28 28 N 1.31913 * 121.91558 * 359.97438 * 27 26 4 29 29 H 1.08997 * 109.47471 * 90.00493 * 1 2 3 30 30 H 1.09010 * 109.46920 * 210.00419 * 1 2 3 31 31 H 1.08999 * 109.46819 * 329.99537 * 1 2 3 32 32 H 1.08001 * 120.86671 * 359.69732 * 3 2 1 33 33 H 1.09002 * 109.47147 * 202.96475 * 8 7 5 34 34 H 1.08997 * 109.47563 * 322.96737 * 8 7 5 35 35 H 1.09008 * 109.46925 * 299.99964 * 9 8 7 36 36 H 1.09001 * 109.47428 * 59.99156 * 9 8 7 37 37 H 0.96994 * 120.00153 * 0.02562 * 10 9 8 38 38 H 0.96999 * 120.00217 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46698 * 205.74115 * 19 7 5 40 40 H 1.08998 * 109.47154 * 325.74547 * 19 7 5 41 41 H 1.08000 * 119.99915 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.00044 * 180.23484 * 22 21 20 43 43 H 1.07996 * 119.99123 * 179.72742 * 23 22 21 44 44 H 1.07997 * 119.99569 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00084 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.04684 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1969 0.0000 4 6 3.6039 1.1441 0.0058 5 6 4.4062 2.3932 0.0055 6 8 3.8561 3.4685 -0.1241 7 7 5.7450 2.3343 0.1492 8 6 6.4163 1.0348 0.2313 9 6 6.6464 0.4895 -1.1797 10 7 7.3182 -0.8098 -1.0976 11 6 7.6286 -1.4936 -2.2427 12 1 7.3786 -1.0749 -3.2063 13 6 8.2657 -2.7245 -2.1650 14 7 8.5709 -3.2345 -0.9906 15 14 8.6885 -3.6576 -3.7270 16 1 8.2421 -2.8749 -4.9074 17 1 10.1574 -3.8647 -3.7976 18 1 8.0028 -4.9748 -3.7177 19 6 6.5289 3.5697 0.2231 20 6 6.5586 4.0611 1.6475 21 6 5.5342 4.8564 2.1257 22 6 5.5591 5.3034 3.4337 23 6 6.6138 4.9634 4.2602 24 6 7.6408 4.1725 3.7803 25 6 7.6131 3.7209 2.4741 26 7 4.2027 -0.0446 0.0117 27 6 3.4954 -1.1537 0.0114 28 7 2.1764 -1.1397 0.0060 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6912 2.1441 -0.0049 33 1 7.3752 1.1523 0.7361 34 1 5.7931 0.3386 0.7926 35 1 5.6876 0.3719 -1.6846 36 1 7.2696 1.1856 -1.7411 37 1 7.5425 -1.1860 -0.2322 38 1 9.0158 -4.0948 -0.9363 39 1 7.5466 3.3751 -0.1154 40 1 6.0729 4.3280 -0.4134 41 1 4.7123 5.1254 1.4788 42 1 4.7568 5.9216 3.8084 43 1 6.6353 5.3162 5.2807 44 1 8.4649 3.9073 4.4259 45 1 8.4157 3.1033 2.0991 46 1 4.0095 -2.1035 0.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279305053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:12 Heat of formation + Delta-G solvation = 75.083360 kcal Electronic energy + Delta-G solvation = -29307.657056 eV Core-core repulsion = 25391.719233 eV Total energy + Delta-G solvation = -3915.937824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33886 -39.88425 -38.76534 -36.32821 -34.52424 -34.27621 -32.70244 -31.91306 -30.94993 -30.86873 -28.75162 -27.76117 -26.77053 -24.48598 -23.84000 -23.31796 -22.57479 -21.53934 -21.50345 -19.62655 -17.99632 -17.38231 -16.92117 -16.54004 -16.01504 -15.88674 -15.52166 -15.34605 -15.16800 -14.90016 -14.64489 -14.38183 -13.87485 -13.67761 -13.46953 -13.30052 -13.20528 -12.97462 -12.92983 -12.83197 -12.60921 -12.51068 -11.92096 -11.54791 -11.22381 -11.15841 -11.01749 -10.85538 -10.82293 -10.66865 -10.34849 -10.29829 -10.06198 -9.72643 -9.59066 -9.10029 -8.96239 -8.84473 -8.75779 -8.51055 -6.87802 -5.74998 -3.02308 0.53921 0.93608 1.21214 1.36313 2.76545 2.91316 3.43795 3.50382 3.51844 3.76113 3.84831 3.95921 4.02357 4.32361 4.63488 4.74176 4.75624 4.83831 4.92125 4.94730 5.09253 5.12422 5.24850 5.32735 5.43477 5.47212 5.51842 5.56699 5.61398 5.61939 5.66380 5.75460 5.92785 5.96069 6.01017 6.12024 6.21052 6.39443 6.41818 6.44812 6.49484 6.57037 6.86537 6.89631 6.94555 6.99810 7.38972 7.72640 7.96952 8.14562 8.44078 9.55587 10.13603 10.49168 11.47795 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007962 B = 0.004032 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.006260 B = 6943.154381 C = 9616.949732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.169 3.831 3 C -0.176 4.176 4 C 0.129 3.871 5 C 0.573 3.427 6 O -0.535 6.535 7 N -0.576 5.576 8 C 0.091 3.909 9 C 0.156 3.844 10 N -0.723 5.723 11 C -0.231 4.231 12 H 0.067 0.933 13 C -0.013 4.013 14 N -0.933 5.933 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.292 1.292 18 H -0.292 1.292 19 C 0.152 3.848 20 C -0.105 4.105 21 C -0.098 4.098 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.102 4.102 26 N -0.466 5.466 27 C 0.306 3.694 28 N -0.510 5.510 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.022 0.978 36 H 0.010 0.990 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 14.452 9.071 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.021 3.979 3 C -0.199 4.199 4 C -0.018 4.018 5 C 0.359 3.641 6 O -0.412 6.412 7 N -0.306 5.306 8 C -0.031 4.031 9 C 0.027 3.973 10 N -0.368 5.368 11 C -0.363 4.363 12 H 0.085 0.915 13 C -0.209 4.209 14 N -0.582 5.582 15 Si 0.735 3.265 16 H -0.207 1.207 17 H -0.219 1.219 18 H -0.219 1.219 19 C 0.030 3.970 20 C -0.106 4.106 21 C -0.116 4.116 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.121 4.121 26 N -0.183 5.183 27 C 0.019 3.981 28 N -0.225 5.225 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.088 0.912 34 H 0.135 0.865 35 H 0.040 0.960 36 H 0.027 0.973 37 H 0.217 0.783 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.925 14.144 8.807 19.924 hybrid contribution 0.154 -0.107 -0.605 0.633 sum -10.771 14.037 8.202 19.502 Atomic orbital electron populations 1.20778 0.87587 1.04049 1.03794 1.21790 0.97752 0.87930 0.90462 1.22678 0.94569 1.01046 1.01582 1.21604 0.91849 0.93026 0.95312 1.17846 0.82130 0.87040 0.77074 1.90715 1.71142 1.28780 1.50565 1.47855 1.05503 1.07950 1.69320 1.22477 0.97775 0.82548 1.00296 1.20788 0.95221 0.88248 0.92994 1.42103 1.70248 1.17873 1.06537 1.19217 1.30886 0.99559 0.86622 0.91469 1.24678 1.01818 0.97907 0.96490 1.69662 1.47264 1.19435 1.21808 0.86170 0.77741 0.79873 0.82741 1.20715 1.21946 1.21912 1.20470 0.97050 0.86650 0.92876 1.20239 0.95364 0.98372 0.96612 1.21274 0.98001 0.96556 0.95776 1.21156 0.98547 1.00695 0.94149 1.21161 0.94534 0.98528 0.99563 1.21134 0.98899 0.98473 0.95790 1.21158 0.98131 0.98987 0.93791 1.69066 1.39457 0.98272 1.11479 1.25325 0.86027 0.97591 0.89204 1.68260 1.10894 1.30246 1.13095 0.89581 0.89785 0.90111 0.82816 0.91177 0.86452 0.96040 0.97270 0.78304 0.93651 0.88790 0.89007 0.85266 0.86294 0.86365 0.86078 0.85761 0.77652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.22 36.00 0.37 -0.48 16 2 C 0.17 2.07 6.83 -82.24 -0.56 1.51 16 3 C -0.18 -2.28 9.41 -38.90 -0.37 -2.65 16 4 C 0.13 1.98 6.53 -82.64 -0.54 1.44 16 5 C 0.57 9.00 7.58 -12.04 -0.09 8.91 16 6 O -0.54 -8.77 14.83 5.39 0.08 -8.69 16 7 N -0.58 -8.59 2.48 -175.95 -0.44 -9.02 16 8 C 0.09 1.49 5.08 -4.04 -0.02 1.47 16 9 C 0.16 3.13 5.94 -4.04 -0.02 3.11 16 10 N -0.72 -17.60 5.60 -59.91 -0.34 -17.94 16 11 C -0.23 -6.34 9.99 -15.06 -0.15 -6.49 16 12 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 13 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 14 N -0.93 -27.38 13.06 55.49 0.72 -26.66 16 15 Si 0.90 22.23 29.55 -169.99 -5.02 17.20 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 C 0.15 1.95 5.49 -5.19 -0.03 1.92 16 20 C -0.10 -1.31 5.43 -104.63 -0.57 -1.87 16 21 C -0.10 -1.20 9.51 -39.58 -0.38 -1.58 16 22 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 25 C -0.10 -1.19 9.68 -39.58 -0.38 -1.58 16 26 N -0.47 -7.54 4.61 -11.14 -0.05 -7.59 16 27 C 0.31 4.70 12.28 -92.26 -1.13 3.57 16 28 N -0.51 -7.31 10.36 -10.81 -0.11 -7.42 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.15 1.72 7.75 -52.49 -0.41 1.31 16 33 H 0.07 1.10 8.02 -51.93 -0.42 0.69 16 34 H 0.12 2.01 5.24 -51.97 -0.27 1.74 16 35 H 0.02 0.46 6.80 -51.92 -0.35 0.11 16 36 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.38 9.73 7.67 -40.82 -0.31 9.42 16 38 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.09 1.11 7.95 -51.93 -0.41 0.69 16 40 H 0.09 1.17 7.48 -51.93 -0.39 0.78 16 41 H 0.13 1.65 7.01 -52.49 -0.37 1.28 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.21 3.03 8.06 -52.49 -0.42 2.61 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -31.95 388.29 -10.75 -42.70 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.28 Total: 9.87 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -5.16 Total: 1.69 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -0.21 Total: -68.63 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.95 -10.75 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279305053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.782 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds