Wall clock time and date at job start Tue Mar 31 2020 23:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38782 * 119.90308 * 2 1 4 4 N 1.31776 * 120.11766 * 179.97438 * 3 2 1 5 5 C 1.33028 * 119.93163 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.09683 * 180.02562 * 5 4 3 7 7 O 1.21513 * 120.00022 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99747 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99843 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47332 * 179.97438 * 9 8 6 11 11 C 1.38258 * 120.00519 * 255.37628 * 10 9 8 12 12 C 1.38214 * 120.00065 * 179.97438 * 11 10 9 13 13 C 1.38254 * 119.99818 * 359.79372 * 12 11 10 14 14 C 1.38206 * 120.00289 * 0.48212 * 13 12 11 15 15 C 1.38216 * 119.99806 * 75.40003 * 10 9 8 16 16 C 1.50703 * 119.99784 * 359.97345 * 15 10 9 17 17 N 1.46498 * 109.46994 * 178.00727 * 16 15 10 18 18 C 1.46504 * 120.00111 * 273.78704 * 17 16 15 19 19 C 1.36934 * 120.00026 * 93.78579 * 17 16 15 20 20 H 1.07996 * 120.00213 * 21.82005 * 19 17 16 21 21 C 1.38818 * 119.99814 * 201.82006 * 19 17 16 22 22 N 1.31610 * 120.00088 * 15.24611 * 21 19 17 23 23 Si 1.86809 * 119.99719 * 195.24625 * 21 19 17 24 24 H 1.48501 * 109.46789 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46782 * 119.99815 * 23 21 19 26 26 H 1.48501 * 109.46806 * 240.00081 * 23 21 19 27 27 C 1.39407 * 119.80621 * 0.27391 * 5 4 3 28 28 N 1.32103 * 119.90499 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47105 * 90.00062 * 1 2 3 30 30 H 1.09006 * 109.47093 * 210.00476 * 1 2 3 31 31 H 1.09005 * 109.46903 * 329.99656 * 1 2 3 32 32 H 1.07996 * 119.93639 * 359.97438 * 3 2 1 33 33 H 0.96993 * 120.00058 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.46756 * 60.00053 * 9 8 6 35 35 H 1.08996 * 109.47328 * 300.00382 * 9 8 6 36 36 H 1.08002 * 119.99859 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.99786 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.99521 * 180.25300 * 13 12 11 39 39 H 1.07999 * 120.00071 * 179.76014 * 14 13 12 40 40 H 1.08992 * 109.47813 * 298.01042 * 16 15 10 41 41 H 1.09004 * 109.46988 * 58.01012 * 16 15 10 42 42 H 1.09001 * 109.47357 * 93.48480 * 18 17 16 43 43 H 1.09003 * 109.46965 * 213.49055 * 18 17 16 44 44 H 1.08999 * 109.46812 * 333.48603 * 18 17 16 45 45 H 0.97009 * 119.99649 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.05751 * 179.69619 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2031 0.0000 4 7 3.5166 1.2080 0.0005 5 6 4.1847 0.0576 0.0005 6 6 5.6662 0.0589 0.0017 7 8 6.2747 -0.9929 0.0012 8 7 6.3390 1.2267 0.0032 9 6 7.8040 1.2280 0.0049 10 6 8.3051 2.6492 0.0058 11 6 8.8214 3.2010 -1.1520 12 6 9.2805 4.5047 -1.1512 13 6 9.2195 5.2583 0.0063 14 6 8.7086 4.7049 1.1651 15 6 8.2490 3.4010 1.1643 16 6 7.6861 2.7996 2.4263 17 7 7.7805 3.7742 3.5159 18 6 9.0094 3.8713 4.3076 19 6 6.7201 4.5945 3.7946 20 1 5.7245 4.3149 3.4830 21 6 6.9247 5.7856 4.4775 22 7 8.1401 6.2766 4.5947 23 14 5.4747 6.6916 5.2302 24 1 4.2250 5.9362 4.9605 25 1 5.6734 6.8114 6.6969 26 1 5.3734 8.0470 4.6319 27 6 3.4867 -1.1491 -0.0058 28 7 2.1656 -1.1451 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6563 2.1368 -0.0004 33 1 5.8533 2.0663 0.0040 34 1 8.1687 0.7151 -0.8850 35 1 8.1668 0.7139 0.8949 36 1 8.8653 2.6136 -2.0572 37 1 9.6835 4.9358 -2.0557 38 1 9.5745 6.2783 0.0058 39 1 8.6646 5.2924 2.0703 40 1 6.6415 2.5326 2.2671 41 1 8.2536 1.9064 2.6876 42 1 9.6561 4.6387 3.8821 43 1 8.7597 4.1352 5.3352 44 1 9.5268 2.9120 4.2943 45 1 8.2831 7.1088 5.0723 46 1 4.0250 -2.0854 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280315155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:56 Heat of formation + Delta-G solvation = 63.823068 kcal Electronic energy + Delta-G solvation = -28952.325945 eV Core-core repulsion = 25035.899838 eV Total energy + Delta-G solvation = -3916.426106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.52051 -39.68592 -38.73077 -35.57026 -35.12195 -34.68876 -33.12196 -31.96119 -31.04829 -29.87314 -28.85379 -26.50132 -25.89601 -25.40625 -24.83255 -23.62375 -22.15629 -21.00612 -20.80587 -19.96202 -18.43263 -17.90123 -16.75387 -16.25414 -16.02357 -15.83196 -15.74281 -15.26240 -15.12751 -14.67185 -14.36976 -14.18509 -13.76385 -13.62810 -13.24841 -13.13159 -13.02297 -12.93731 -12.79902 -12.55525 -12.36888 -12.14961 -11.92447 -11.56723 -11.44711 -11.32684 -10.90899 -10.77994 -10.55589 -10.51019 -10.39018 -10.28222 -10.02502 -9.87084 -9.53281 -9.38769 -9.01396 -8.59360 -8.29974 -8.01236 -6.86467 -5.79470 -3.23920 0.12966 0.77956 1.71801 2.01268 2.57924 3.08262 3.34393 3.42650 3.43940 3.54415 3.71784 3.80311 4.11290 4.36812 4.46291 4.52585 4.73295 4.84427 4.99458 5.13696 5.18223 5.25429 5.29446 5.31910 5.44648 5.55092 5.55772 5.59649 5.77448 5.82525 6.00225 6.02655 6.26598 6.32234 6.40648 6.46787 6.57543 6.72867 6.75901 6.84832 6.92738 7.20796 7.29948 7.33436 7.40711 7.56897 7.66836 7.70699 7.79660 8.08847 8.33309 9.17884 9.80092 10.29212 11.25819 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.003700 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.807301 B = 7565.843245 C = 9597.884871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.098 3.902 3 C 0.054 3.946 4 N -0.404 5.404 5 C 0.023 3.977 6 C 0.575 3.425 7 O -0.535 6.535 8 N -0.696 5.696 9 C 0.166 3.834 10 C -0.129 4.129 11 C -0.113 4.113 12 C -0.141 4.141 13 C -0.120 4.120 14 C -0.087 4.087 15 C -0.074 4.074 16 C 0.181 3.819 17 N -0.598 5.598 18 C 0.160 3.840 19 C -0.252 4.252 20 H 0.068 0.932 21 C 0.004 3.996 22 N -0.906 5.906 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.114 3.886 28 N -0.444 5.444 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.177 0.823 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.162 0.838 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.030 0.970 43 H 0.045 0.955 44 H -0.002 1.002 45 H 0.253 0.747 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.396 -9.337 -11.979 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.043 4.043 3 C -0.109 4.109 4 N -0.121 5.121 5 C -0.117 4.117 6 C 0.358 3.642 7 O -0.411 6.411 8 N -0.347 5.347 9 C 0.044 3.956 10 C -0.130 4.130 11 C -0.132 4.132 12 C -0.159 4.159 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.078 4.078 16 C 0.053 3.947 17 N -0.320 5.320 18 C 0.015 3.985 19 C -0.382 4.382 20 H 0.086 0.914 21 C -0.194 4.194 22 N -0.551 5.551 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.046 4.046 28 N -0.159 5.159 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.194 0.806 33 H 0.251 0.749 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.180 0.820 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.017 0.983 45 H 0.063 0.937 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.824 -9.957 -11.842 17.337 hybrid contribution -0.850 1.261 0.323 1.555 sum -8.674 -8.696 -11.519 16.839 Atomic orbital electron populations 1.20766 0.87229 1.04439 1.03776 1.22680 0.98871 0.89753 0.93032 1.23729 0.90157 0.99542 0.97505 1.68373 1.09268 1.28581 1.05833 1.22199 0.95937 0.91020 1.02566 1.17605 0.84917 0.84386 0.77296 1.90792 1.68382 1.31233 1.50743 1.45978 1.07529 1.08864 1.72281 1.20198 0.78567 0.94104 1.02739 1.19602 1.03999 0.95050 0.94346 1.20817 1.00137 0.95460 0.96769 1.20970 1.02218 0.94633 0.98044 1.21287 0.99684 0.99496 0.93318 1.21796 0.94004 0.95198 0.99437 1.21287 0.95992 0.94618 0.95856 1.19928 0.98194 0.91687 0.84890 1.43957 1.14722 1.40814 1.32477 1.20844 0.87167 0.94667 0.95818 1.19220 0.87127 0.98649 1.33186 0.91420 1.24925 0.96338 0.96274 1.01849 1.70043 1.19345 1.20585 1.45121 0.86242 0.82191 0.79479 0.78982 1.20424 1.21654 1.21766 1.23811 0.89892 0.99317 0.91537 1.68471 1.08289 1.29004 1.10113 0.89546 0.89829 0.89708 0.80569 0.74874 0.90856 0.90231 0.87019 0.87085 0.86859 0.82025 0.92097 0.93177 0.95157 0.93624 0.98338 0.93707 0.79993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.19 36.00 0.37 -0.22 16 2 C 0.10 0.93 6.79 -82.28 -0.56 0.37 16 3 C 0.05 0.54 10.88 -17.37 -0.19 0.35 16 4 N -0.40 -5.14 9.71 -9.61 -0.09 -5.24 16 5 C 0.02 0.31 6.75 -82.84 -0.56 -0.25 16 6 C 0.57 8.41 7.81 -12.19 -0.10 8.31 16 7 O -0.53 -8.80 16.35 5.35 0.09 -8.71 16 8 N -0.70 -9.93 5.01 -62.34 -0.31 -10.24 16 9 C 0.17 2.37 5.15 -5.20 -0.03 2.35 16 10 C -0.13 -2.04 5.25 -104.62 -0.55 -2.59 16 11 C -0.11 -1.66 9.67 -39.58 -0.38 -2.04 16 12 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 13 C -0.12 -2.09 10.05 -39.59 -0.40 -2.48 16 14 C -0.09 -1.77 9.14 -39.59 -0.36 -2.13 16 15 C -0.07 -1.40 5.88 -104.62 -0.62 -2.01 16 16 C 0.18 3.65 5.00 -5.19 -0.03 3.62 16 17 N -0.60 -14.33 1.73 -182.50 -0.32 -14.64 16 18 C 0.16 3.80 8.61 59.85 0.52 4.32 16 19 C -0.25 -6.61 9.18 -15.06 -0.14 -6.75 16 20 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 21 C 0.00 0.12 5.04 -17.43 -0.09 0.03 16 22 N -0.91 -24.90 10.78 55.49 0.60 -24.30 16 23 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.11 1.37 10.77 -17.00 -0.18 1.19 16 28 N -0.44 -5.06 10.41 -8.94 -0.09 -5.15 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 33 H 0.41 6.01 7.81 -40.82 -0.32 5.69 16 34 H 0.07 0.96 7.95 -51.93 -0.41 0.55 16 35 H 0.08 1.19 7.22 -51.93 -0.37 0.81 16 36 H 0.11 1.36 8.00 -52.49 -0.42 0.94 16 37 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.16 3.95 5.75 -52.49 -0.30 3.65 16 40 H 0.06 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.05 0.96 7.30 -51.93 -0.38 0.59 16 42 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 43 H 0.05 1.17 7.21 -51.93 -0.37 0.79 16 44 H 0.00 -0.04 7.89 -51.93 -0.41 -0.45 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.18 1.94 7.65 -52.48 -0.40 1.54 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -30.34 386.92 -9.23 -39.57 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.22 Total: 7.13 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -3.69 Total: -0.46 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.22 Total: -59.58 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.34 -9.23 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280315155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.393 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds