Wall clock time and date at job start Tue Mar 31 2020 23:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38782 * 119.90308 * 2 1 4 4 N 1.31776 * 120.11766 * 179.97438 * 3 2 1 5 5 C 1.33028 * 119.93163 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.09683 * 180.02562 * 5 4 3 7 7 O 1.21513 * 120.00022 * 180.02562 * 6 5 4 8 8 N 1.34776 * 119.99747 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99843 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47332 * 179.97438 * 9 8 6 11 11 C 1.38258 * 120.00519 * 255.37628 * 10 9 8 12 12 C 1.38214 * 120.00065 * 179.97438 * 11 10 9 13 13 C 1.38254 * 119.99818 * 359.79372 * 12 11 10 14 14 C 1.38206 * 120.00289 * 0.48212 * 13 12 11 15 15 C 1.38216 * 119.99806 * 75.40003 * 10 9 8 16 16 C 1.50703 * 119.99784 * 359.97345 * 15 10 9 17 17 N 1.46498 * 109.46994 * 178.00727 * 16 15 10 18 18 C 1.46504 * 120.00111 * 273.78704 * 17 16 15 19 19 C 1.36934 * 120.00026 * 93.78579 * 17 16 15 20 20 H 1.07996 * 120.00213 * 21.82005 * 19 17 16 21 21 C 1.38818 * 119.99814 * 201.82006 * 19 17 16 22 22 N 1.31610 * 120.00088 * 15.24611 * 21 19 17 23 23 Si 1.86809 * 119.99719 * 195.24625 * 21 19 17 24 24 H 1.48501 * 109.46789 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46782 * 119.99815 * 23 21 19 26 26 H 1.48501 * 109.46806 * 240.00081 * 23 21 19 27 27 C 1.39407 * 119.80621 * 0.27391 * 5 4 3 28 28 N 1.32103 * 119.90499 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47105 * 90.00062 * 1 2 3 30 30 H 1.09006 * 109.47093 * 210.00476 * 1 2 3 31 31 H 1.09005 * 109.46903 * 329.99656 * 1 2 3 32 32 H 1.07996 * 119.93639 * 359.97438 * 3 2 1 33 33 H 0.96993 * 120.00058 * 0.02562 * 8 6 5 34 34 H 1.09004 * 109.46756 * 60.00053 * 9 8 6 35 35 H 1.08996 * 109.47328 * 300.00382 * 9 8 6 36 36 H 1.08002 * 119.99859 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.99786 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.99521 * 180.25300 * 13 12 11 39 39 H 1.07999 * 120.00071 * 179.76014 * 14 13 12 40 40 H 1.08992 * 109.47813 * 298.01042 * 16 15 10 41 41 H 1.09004 * 109.46988 * 58.01012 * 16 15 10 42 42 H 1.09001 * 109.47357 * 93.48480 * 18 17 16 43 43 H 1.09003 * 109.46965 * 213.49055 * 18 17 16 44 44 H 1.08999 * 109.46812 * 333.48603 * 18 17 16 45 45 H 0.97009 * 119.99649 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.05751 * 179.69619 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.2031 0.0000 4 7 3.5166 1.2080 0.0005 5 6 4.1847 0.0576 0.0005 6 6 5.6662 0.0589 0.0017 7 8 6.2747 -0.9929 0.0012 8 7 6.3390 1.2267 0.0032 9 6 7.8040 1.2280 0.0049 10 6 8.3051 2.6492 0.0058 11 6 8.8214 3.2010 -1.1520 12 6 9.2805 4.5047 -1.1512 13 6 9.2195 5.2583 0.0063 14 6 8.7086 4.7049 1.1651 15 6 8.2490 3.4010 1.1643 16 6 7.6861 2.7996 2.4263 17 7 7.7805 3.7742 3.5159 18 6 9.0094 3.8713 4.3076 19 6 6.7201 4.5945 3.7946 20 1 5.7245 4.3149 3.4830 21 6 6.9247 5.7856 4.4775 22 7 8.1401 6.2766 4.5947 23 14 5.4747 6.6916 5.2302 24 1 4.2250 5.9362 4.9605 25 1 5.6734 6.8114 6.6969 26 1 5.3734 8.0470 4.6319 27 6 3.4867 -1.1491 -0.0058 28 7 2.1656 -1.1451 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6563 2.1368 -0.0004 33 1 5.8533 2.0663 0.0040 34 1 8.1687 0.7151 -0.8850 35 1 8.1668 0.7139 0.8949 36 1 8.8653 2.6136 -2.0572 37 1 9.6835 4.9358 -2.0557 38 1 9.5745 6.2783 0.0058 39 1 8.6646 5.2924 2.0703 40 1 6.6415 2.5326 2.2671 41 1 8.2536 1.9064 2.6876 42 1 9.6561 4.6387 3.8821 43 1 8.7597 4.1352 5.3352 44 1 9.5268 2.9120 4.2943 45 1 8.2831 7.1088 5.0723 46 1 4.0250 -2.0854 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280315155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:55 Heat of formation + Delta-G solvation = 45.889887 kcal Electronic energy + Delta-G solvation = -28953.103586 eV Core-core repulsion = 25035.899838 eV Total energy + Delta-G solvation = -3917.203748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.39023 -40.89532 -39.98645 -37.37605 -36.20201 -35.64358 -33.89111 -33.72636 -32.36212 -31.47992 -29.64562 -28.12282 -27.62568 -26.81167 -25.66482 -24.48319 -23.85050 -22.31519 -21.96901 -21.42266 -19.45216 -18.82049 -18.72637 -17.39906 -17.06310 -17.01878 -16.82706 -16.61759 -16.22176 -16.03733 -15.55916 -15.49788 -15.42702 -14.87354 -14.77716 -14.57716 -14.02506 -13.81286 -13.73531 -13.62254 -13.44044 -13.29009 -13.24458 -13.02053 -12.80424 -12.78019 -12.57443 -12.32028 -12.29095 -12.05908 -11.93783 -11.83846 -11.62187 -11.56831 -10.62440 -10.40521 -10.26082 -10.10240 -9.62157 -9.39026 -8.83193 -7.82306 -5.28555 -0.73672 -0.05972 0.40504 0.67477 1.44835 1.47611 1.56335 1.56353 2.01606 2.51251 2.64302 2.85508 3.00991 3.07019 3.30953 3.32326 3.64449 3.70418 3.79415 3.93341 4.06858 4.07574 4.20362 4.38317 4.41227 4.45137 4.58948 4.72316 4.75302 4.76768 4.80119 4.81906 4.83269 5.03309 5.03538 5.21961 5.24644 5.29327 5.34006 5.38455 5.61194 5.65009 5.68585 5.86398 5.97799 6.01622 6.27187 6.32410 6.34891 6.59662 6.97026 7.15640 7.85272 8.30470 9.21263 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008724 B = 0.003700 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.807301 B = 7565.843245 C = 9597.884871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.107 3.893 3 C 0.052 3.948 4 N -0.425 5.425 5 C 0.000 4.000 6 C 0.576 3.424 7 O -0.559 6.559 8 N -0.694 5.694 9 C 0.170 3.830 10 C -0.119 4.119 11 C -0.103 4.103 12 C -0.128 4.128 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.088 4.088 16 C 0.185 3.815 17 N -0.608 5.608 18 C 0.175 3.825 19 C -0.256 4.256 20 H 0.065 0.935 21 C -0.042 4.042 22 N -0.929 5.929 23 Si 0.958 3.042 24 H -0.270 1.270 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.111 3.889 28 N -0.460 5.460 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.210 0.790 33 H 0.413 0.587 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.009 0.991 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.247 0.753 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 -9.897 -14.217 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.035 4.035 3 C -0.112 4.112 4 N -0.142 5.142 5 C -0.139 4.139 6 C 0.361 3.639 7 O -0.438 6.438 8 N -0.344 5.344 9 C 0.048 3.952 10 C -0.120 4.120 11 C -0.122 4.122 12 C -0.146 4.146 13 C -0.146 4.146 14 C -0.135 4.135 15 C -0.092 4.092 16 C 0.059 3.941 17 N -0.330 5.330 18 C 0.031 3.969 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.238 4.238 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.047 4.047 28 N -0.175 5.175 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.127 0.873 32 H 0.226 0.774 33 H 0.250 0.750 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.489 -10.547 -14.098 20.001 hybrid contribution -0.419 1.408 0.932 1.739 sum -9.908 -9.139 -13.166 18.843 Atomic orbital electron populations 1.20938 0.84209 1.05626 1.05223 1.23364 1.00700 0.89011 0.90469 1.24346 0.89357 1.01158 0.96329 1.68328 1.10749 1.28552 1.06532 1.21961 0.95137 0.91758 1.05052 1.17808 0.85659 0.83945 0.76537 1.90766 1.69119 1.31882 1.52000 1.45934 1.07453 1.08797 1.72211 1.20179 0.78675 0.93081 1.03284 1.19661 1.03301 0.95312 0.93689 1.21232 0.98081 0.95510 0.97344 1.21327 1.00687 0.94475 0.98133 1.21392 0.99670 1.00221 0.93342 1.21484 0.97096 0.95834 0.99108 1.20974 0.97410 0.94523 0.96249 1.19920 0.98362 0.91042 0.84793 1.44057 1.14130 1.41031 1.33825 1.20572 0.87126 0.95129 0.94121 1.19391 0.87594 0.98860 1.32741 0.91770 1.25564 0.98390 0.97154 1.02690 1.70196 1.20863 1.20688 1.45828 0.85338 0.80016 0.78202 0.77691 1.19448 1.22039 1.21974 1.23880 0.90369 0.99161 0.91326 1.68556 1.07914 1.30091 1.10974 0.87688 0.89843 0.87310 0.77360 0.75004 0.88972 0.91066 0.83391 0.83482 0.86255 0.86567 0.92379 0.92382 0.97274 0.96164 0.95913 0.94322 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.19 71.24 0.73 -0.09 16 2 C 0.11 1.78 6.79 42.65 0.29 2.07 16 3 C 0.05 0.93 10.88 84.83 0.92 1.85 16 4 N -0.42 -10.39 9.71 -184.32 -1.79 -12.18 16 5 C 0.00 0.00 6.75 41.88 0.28 0.28 16 6 C 0.58 16.70 7.81 86.88 0.68 17.38 16 7 O -0.56 -18.32 16.35 -3.76 -0.06 -18.39 16 8 N -0.69 -19.28 5.01 -469.42 -2.35 -21.64 16 9 C 0.17 4.61 5.15 85.63 0.44 5.05 16 10 C -0.12 -3.56 5.25 -19.87 -0.10 -3.67 16 11 C -0.10 -2.67 9.67 22.27 0.22 -2.45 16 12 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 13 C -0.13 -4.39 10.05 22.27 0.22 -4.16 16 14 C -0.12 -4.90 9.14 22.27 0.20 -4.70 16 15 C -0.09 -3.35 5.88 -19.86 -0.12 -3.46 16 16 C 0.19 7.61 5.00 85.63 0.43 8.04 16 17 N -0.61 -30.08 1.73 -731.30 -1.27 -31.35 16 18 C 0.18 8.70 8.61 127.77 1.10 9.80 16 19 C -0.26 -13.76 9.18 84.04 0.77 -12.99 16 20 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 21 C -0.04 -2.31 5.04 84.86 0.43 -1.88 16 22 N -0.93 -53.15 10.78 21.65 0.23 -52.92 16 23 Si 0.96 44.47 29.58 68.60 2.03 46.50 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 C 0.11 2.63 10.77 84.93 0.91 3.55 16 28 N -0.46 -9.93 10.41 -182.21 -1.90 -11.83 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.11 0.38 8.09 -2.38 -0.02 0.36 16 32 H 0.21 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.41 11.75 7.81 -92.71 -0.72 11.03 16 34 H 0.09 2.18 7.95 -2.38 -0.02 2.16 16 35 H 0.07 2.07 7.22 -2.39 -0.02 2.05 16 36 H 0.15 2.83 8.00 -2.91 -0.02 2.81 16 37 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 38 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.12 6.01 5.75 -2.91 -0.02 5.99 16 40 H 0.06 2.38 7.51 -2.39 -0.02 2.37 16 41 H 0.06 2.25 7.30 -2.39 -0.02 2.23 16 42 H 0.01 0.48 6.81 -2.39 -0.02 0.47 16 43 H 0.02 1.06 7.21 -2.39 -0.02 1.04 16 44 H 0.02 0.98 7.89 -2.39 -0.02 0.96 16 45 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 46 H 0.19 4.02 7.65 -2.91 -0.02 4.00 16 Total: -1.00 -68.38 386.92 2.81 -65.57 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.29 Total: 24.86 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 7.63 Total: 11.36 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -7.08 Total: -129.90 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.06 Total: -18.39 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.38 2.81 -65.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280315155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.460 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds